UBERON:0005399: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005399 | |||
|is_a=UBERON:0003937 ;;UBERON:0014403 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=male reproductive gland | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000079 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=organ_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0000080;;MA:0000399 | |||
}} | }} | ||
Latest revision as of 17:53, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003937(sex gland),UBERON:0014403(male anatomical structure) |
|---|---|
| part_of: | UBERON:0000079(male reproductive system) |
Children
| is a: | UBERON:0006868 (seminal fluid secreting gland),UBERON:0010147 (male accessory sex gland) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10022-101D4 (prostate, adult, pool1)
- 10092-102C2
- 10201-103F3 (seminal vesicle, adult)
- 10439-106E7 (prostate cancer cell line:PC-3)
- 10490-107B4 (prostate cancer cell line:DU145)
- 10491-107B5
- 11253-116F2 (Prostate Epithelial Cells (polarized), donor1)
- 11254-116F3 (Prostate Stromal Cells, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11331-117E8 (Prostate Epithelial Cells, donor2)
... further results Mouse (Mus musculus)
- 10022-101D4 (prostate, adult, pool1)
- 10092-102C2
- 10201-103F3 (seminal vesicle, adult)
- 10439-106E7 (prostate cancer cell line:PC-3)
- 10490-107B4 (prostate cancer cell line:DU145)
- 10491-107B5
- 11253-116F2 (Prostate Epithelial Cells (polarized), donor1)
- 11254-116F3 (Prostate Stromal Cells, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11331-117E8 (Prostate Epithelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005399 (male reproductive gland), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42536199..42536211,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536199..42536211, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:146346226..146346230,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr3:146346226..146346230, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:186196122..186196127,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:186196122..186196127, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28941749..28941753,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28941749..28941753, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:164114952..164114963,+#_9f918517178583dbd25b2f87577d7bd0 | p3@Svs3a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28942683..28942696,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942683..28942696, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28900367..28900381,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28900367..28900381, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:155925362..155925372,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:155925362..155925372, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:58602232..58602239,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr12:58602232..58602239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:48938762..48938772,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:48938762..48938772, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42547547..42547558,-#_9f918517178583dbd25b2f87577d7bd0 | p5@Fam115e |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:95769561..95769572,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr10:95769561..95769572, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:122965681..122965692,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122965681..122965692, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:122965681..122965692,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122965681..122965692, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42547547..42547558,-#_9f918517178583dbd25b2f87577d7bd0 | p5@Fam115e |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9755844..9755850,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:9755844..9755850, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:80141117..80141124,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:80141117..80141124, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28924741..28924765,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28924741..28924765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:108669963..108669966,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:108669963..108669966, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28924808..28924822,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28924808..28924822, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:72989318..72989328,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:72989318..72989328, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28925188..28925198,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28925188..28925198, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:33251670..33251672,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr19:33251670..33251672, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28932184..28932193,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28932184..28932193, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:110122546..110122556,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr12:110122546..110122556, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28938434..28938445,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28938434..28938445, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:17361677..17361698,+#_9f918517178583dbd25b2f87577d7bd0 | p1@Mir3066 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28941731..28941748,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28941731..28941748, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:33250291..33250313,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr5:33250291..33250313, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:122954155..122954170,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122954155..122954170, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:41338776..41338779,-#_9f918517178583dbd25b2f87577d7bd0 | p9@Tm9sf3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:122954155..122954170,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122954155..122954170, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42543275..42543292,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42543275..42543292, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:53713615..53713626,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr10:53713615..53713626, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28922117..28922126,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28922117..28922126, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28922144..28922151,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28922144..28922151, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:164063067..164063075,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:164063067..164063075, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:96038677..96038680,+#_9f918517178583dbd25b2f87577d7bd0 | p1@ENSMUST00000145517 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:80142501..80142512,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:80142501..80142512, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:96038677..96038680,+#_9f918517178583dbd25b2f87577d7bd0 | p1@ENSMUST00000145517 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42535803..42535831,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42535803..42535831, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:128083441..128083479,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:128083441..128083479, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:120000741..120000746,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr11:120000741..120000746, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28929217..28929228,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28929217..28929228, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28937935..28937949,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28937935..28937949, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:94930111..94930121,+#_9f918517178583dbd25b2f87577d7bd0 | p5@Tmod4 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:56499081..56499082,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr19:56499081..56499082, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:90816764..90816767,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr16:90816764..90816767, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:36341313..36341355,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:36341313..36341355, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:57794383..57794394,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:57794383..57794394, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42536921..42536936,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536921..42536936, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:80141117..80141124,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:80141117..80141124, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:27934517..27934519,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr17:27934517..27934519, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28944445..28944450,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28944445..28944450, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:122976527..122976537,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122976527..122976537, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:110122546..110122556,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr12:110122546..110122556, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:56552214..56552221,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr19:56552214..56552221, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:122976527..122976537,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122976527..122976537, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28927465..28927475,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28927465..28927475, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:79852528..79852563,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:79852528..79852563, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:72989318..72989328,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:72989318..72989328, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:41338776..41338779,-#_9f918517178583dbd25b2f87577d7bd0 | p9@Tm9sf3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:75083305..75083315,-#_9f918517178583dbd25b2f87577d7bd0 | p@chrX:75083305..75083315, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:120000750..120000762,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr11:120000750..120000762, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42536403..42536406,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536403..42536406, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:103891512..103891525,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr12:103891512..103891525, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42536268..42536279,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536268..42536279, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:164101819..164101829,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:164101819..164101829, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28942590..28942600,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942590..28942600, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28914121..28914125,+#_9f918517178583dbd25b2f87577d7bd0 | p5@9530053A07Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28914339..28914347,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28914339..28914347, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:122970856..122970866,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122970856..122970866, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:122970856..122970866,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122970856..122970866, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:88222379..88222385,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:88222379..88222385, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42547711..42547719,-#_9f918517178583dbd25b2f87577d7bd0 | p6@Fam115e |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:32075675..32075688,+#_9f918517178583dbd25b2f87577d7bd0 | p3@Slc26a3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28925188..28925198,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28925188..28925198, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:73951931..73951939,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:73951931..73951939, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:120075948..120075975,+#_9f918517178583dbd25b2f87577d7bd0 | p1@ENSMUST00000156235 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28927266..28927277,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28927266..28927277, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:155925362..155925372,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:155925362..155925372, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:36341385..36341396,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:36341385..36341396, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42535859..42535880,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42535859..42535880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:63673922..63673930,+#_9f918517178583dbd25b2f87577d7bd0 | p6@Defb42 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28939739..28939749,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28939739..28939749, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28942590..28942600,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942590..28942600, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:122960541..122960563,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122960541..122960563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:122960541..122960563,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122960541..122960563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:80158173..80158181,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:80158173..80158181, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28922452..28922463,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28922452..28922463, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:54955399..54955415,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:54955399..54955415, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28924741..28924765,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28924741..28924765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28924835..28924855,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28924835..28924855, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:11354136..11354149,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr19:11354136..11354149, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28929217..28929228,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28929217..28929228, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:73951931..73951939,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:73951931..73951939, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:54955334..54955338,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:54955334..54955338, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28932441..28932449,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28932441..28932449, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28939712..28939733,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28939712..28939733, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:56552214..56552221,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr19:56552214..56552221, + |
