CL:0002571: Difference between revisions
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|subset= | |subset= | ||
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|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
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Revision as of 17:27, 26 June 2012
| Name: | hepatic mesenchymal stem cell |
|---|---|
| Namespace: | cell |
| Definition: | "A mesenchymal stem cell of liver." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-01T09:58:51Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000134(mesenchymal cell),CL:0002195(hepatic stem cell) |
|---|
Children
| derives from: | FF:0000098 (human hepatic mesenchymal stem cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11538-120A8 (Mesenchymal Stem Cells - hepatic, donor1)
- 11618-122A7 (Mesenchymal Stem Cells - hepatic, donor2)
- 11699-123A7
Mouse (Mus musculus)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11538-120A8 (Mesenchymal Stem Cells - hepatic, donor1)
- 11618-122A7 (Mesenchymal Stem Cells - hepatic, donor2)
- 11699-123A7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002571 (hepatic mesenchymal stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr10:91939935..91939941,+#_238e02bf54d24bc206a3976b2bfaaf36 | p@chr10:91939935..91939941, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:148586717..148586723,+#_238e02bf54d24bc206a3976b2bfaaf36 | p@chr5:148586717..148586723, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr10:91939935..91939941,+#_238e02bf54d24bc206a3976b2bfaaf36 | p@chr10:91939935..91939941, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:148586717..148586723,+#_238e02bf54d24bc206a3976b2bfaaf36 | p@chr5:148586717..148586723, + |
| 4.61e-131 | FFCP PHASE1:Hg19::chr20:35695582..35695602,-#_926b16ea60d232836b2907ae007a8758 | p@chr20:35695582..35695602, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr5:148600871..148600881,-#_926b16ea60d232836b2907ae007a8758 | p@chr5:148600871..148600881, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr20:35695582..35695602,-#_926b16ea60d232836b2907ae007a8758 | p@chr20:35695582..35695602, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr5:148600871..148600881,-#_926b16ea60d232836b2907ae007a8758 | p@chr5:148600871..148600881, - |
| 1.75e-130 | FFCP PHASE2:Hg19::chr4:175131715..175131722,+#_dc46449212cb4333327956f508ccbb7f | p@chr4:175131715..175131722, + |
| 1.75e-130 | FFCP PHASE1:Hg19::chr4:175131715..175131722,+#_dc46449212cb4333327956f508ccbb7f | p@chr4:175131715..175131722, + |
| 2.56e-98 | FFCP PHASE2:Hg19::chr14:65105965..65105968,-#_2882e9ef0aa4e9ec4c8fa0dccb967f0a | p@chr14:65105965..65105968, - |
| 2.56e-98 | FFCP PHASE1:Hg19::chr9:94955376..94955381,+#_2882e9ef0aa4e9ec4c8fa0dccb967f0a | p@chr9:94955376..94955381, + |
| 2.56e-98 | FFCP PHASE1:Hg19::chr14:65105965..65105968,-#_2882e9ef0aa4e9ec4c8fa0dccb967f0a | p@chr14:65105965..65105968, - |
| 2.56e-98 | FFCP PHASE2:Hg19::chr9:94955376..94955381,+#_2882e9ef0aa4e9ec4c8fa0dccb967f0a | p@chr9:94955376..94955381, + |
| 3.96e-66 | FFCP PHASE2:Hg19::chr22:25091949..25091962,-#_789fc9f53012c69ebd616e7d604193a4 | p@chr22:25091949..25091962, - |
| 3.96e-66 | FFCP PHASE1:Hg19::chr22:25091949..25091962,-#_789fc9f53012c69ebd616e7d604193a4 | p@chr22:25091949..25091962, - |
| 1.08e-65 | FFCP PHASE1:Hg19::chr18:72618246..72618294,-#_c58c0bd62446463f7ae38d97c19be530 | p@chr18:72618246..72618294, - |
| 1.08e-65 | FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_c58c0bd62446463f7ae38d97c19be530 | p1@ENST00000435177 |
| 1.08e-65 | FFCP PHASE2:Hg19::chr18:72618246..72618294,-#_c58c0bd62446463f7ae38d97c19be530 | p@chr18:72618246..72618294, - |
| 1.08e-65 | FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_c58c0bd62446463f7ae38d97c19be530 | p1@ENST00000435177 |
| 2.02e-57 | FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_4ab0c037ebed375c658a5ce3922262c6 | p@chr10:92178805..92178827, + |
| 2.02e-57 | FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_4ab0c037ebed375c658a5ce3922262c6 | p@chr10:92178805..92178827, + |
| 1.13e-56 | FFCP PHASE2:Hg19::chr4:86683248..86683251,+#_14342ea78da5707c039b3bdee5ced4ec | p@chr4:86683248..86683251, + |
| 1.13e-56 | FFCP PHASE1:Hg19::chr4:86683248..86683251,+#_14342ea78da5707c039b3bdee5ced4ec | p@chr4:86683248..86683251, + |
| 1.5e-56 | FFCP PHASE1:Hg19::chr9:112889870..112889881,+#_fce2b552a15047b2327834336d457400 | p24@AKAP2, p26@PALM2-AKAP2 |
| 1.5e-56 | FFCP PHASE2:Hg19::chr9:112889870..112889881,+#_fce2b552a15047b2327834336d457400 | p24@AKAP2, p26@PALM2-AKAP2 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr9:12701369..12701379,+#_c4709f6b3d26b75a67c18c0ad9f0325d | p29@TYRP1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr9:12701369..12701379,+#_c4709f6b3d26b75a67c18c0ad9f0325d | p29@TYRP1 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:55831402..55831405,-#_59be82174d64ea56eb1a1b1e533a334b | p19@SMEK2 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:55831402..55831405,-#_59be82174d64ea56eb1a1b1e533a334b | p19@SMEK2 |
| 5.15e-50 | FFCP PHASE1:Hg19::chr4:175135724..175135735,-#_34f634a981ae51a69536ed1baa019bc0 | p@chr4:175135724..175135735, - |
| 5.15e-50 | FFCP PHASE2:Hg19::chr4:175135724..175135735,-#_34f634a981ae51a69536ed1baa019bc0 | p@chr4:175135724..175135735, - |
| 1.09e-49 | FFCP PHASE1:Hg19::chr18:77558264..77558310,+#_e20be8d5998a2521c467bce6ef1211f2 | p@chr18:77558264..77558310, + |
| 1.09e-49 | FFCP PHASE2:Hg19::chr2:216995311..216995323,+#_e20be8d5998a2521c467bce6ef1211f2 | p27@XRCC5 |
| 1.09e-49 | FFCP PHASE2:Hg19::chr18:77558264..77558310,+#_e20be8d5998a2521c467bce6ef1211f2 | p@chr18:77558264..77558310, + |
| 1.09e-49 | FFCP PHASE1:Hg19::chr2:216995311..216995323,+#_e20be8d5998a2521c467bce6ef1211f2 | p27@XRCC5 |
| 4.0e-45 | FFCP PHASE1:Hg19::chr15:56208964..56208977,-#_0af6adfc5749057cb18b36c16be7c3a2 | p11@NEDD4 |
| 4.0e-45 | FFCP PHASE2:Hg19::chr15:56208964..56208977,-#_0af6adfc5749057cb18b36c16be7c3a2 | p11@NEDD4 |
| 7.83e-45 | FFCP PHASE1:Hg19::chr1:235123146..235123150,-#_f262262ab5fdfdfe2e7f4dd2fe55d038 | p@chr1:235123146..235123150, - |
| 7.83e-45 | FFCP PHASE2:Hg19::chr1:235123146..235123150,-#_f262262ab5fdfdfe2e7f4dd2fe55d038 | p@chr1:235123146..235123150, - |
| 3.99e-41 | FFCP PHASE2:Hg19::chr20:35695476..35695506,-#_e5bf37a7783d3ee7207cbae18fb83163 | p@chr20:35695476..35695506, - |
| 3.99e-41 | FFCP PHASE1:Hg19::chr20:35695476..35695506,-#_e5bf37a7783d3ee7207cbae18fb83163 | p@chr20:35695476..35695506, - |
| 5.99e-41 | FFCP PHASE2:Hg19::chr4:175131785..175131801,+#_948bf61c6527f896d3f97fb2f660b61d | p@chr4:175131785..175131801, + |
| 5.99e-41 | FFCP PHASE1:Hg19::chr4:175131785..175131801,+#_948bf61c6527f896d3f97fb2f660b61d | p@chr4:175131785..175131801, + |
| 6.7e-40 | FFCP PHASE1:Hg19::chr11:9588526..9588534,+#_62c2a070d097acecb0c8e903193794ec | p@chr11:9588526..9588534, + |
| 6.7e-40 | FFCP PHASE2:Hg19::chr11:9588526..9588534,+#_62c2a070d097acecb0c8e903193794ec | p@chr11:9588526..9588534, + |
| 9.99e-40 | FFCP PHASE2:Hg19::chr4:174440289..174440300,-#_14926fd74679da20fe7c3b22499822f6 | p@chr4:174440289..174440300, - |
| 9.99e-40 | FFCP PHASE1:Hg19::chr4:174440289..174440300,-#_14926fd74679da20fe7c3b22499822f6 | p@chr4:174440289..174440300, - |
| 1.57e-37 | FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_2a683b3bf27b9b8889720dbee5f2e08d | p@chr7:136759435..136759447, + |
| 1.57e-37 | FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_2a683b3bf27b9b8889720dbee5f2e08d | p@chr7:136759435..136759447, + |
| 9.84e-37 | FFCP PHASE2:Hg19::chr9:12701351..12701368,+#_6f11d956714f11c1a3e6e171177557c1 | p21@TYRP1 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr9:12701351..12701368,+#_6f11d956714f11c1a3e6e171177557c1 | p21@TYRP1 |
| 1.18e-36 | FFCP PHASE2:Hg19::chr20:44410265..44410286,-#_47c144ebabe1df1f9eb1af46c1ccab1c | p@chr20:44410265..44410286, - |
| 1.18e-36 | FFCP PHASE1:Hg19::chr20:44410265..44410286,-#_47c144ebabe1df1f9eb1af46c1ccab1c | p@chr20:44410265..44410286, - |
| 2.45e-36 | FFCP PHASE2:Hg19::chr1:109935515..109935518,-#_051e3b983882824a7ea4274ab5138ba4 | p@chr1:109935515..109935518, - |
| 2.45e-36 | FFCP PHASE1:Hg19::chr1:109935515..109935518,-#_051e3b983882824a7ea4274ab5138ba4 | p@chr1:109935515..109935518, - |
| 1.11e-34 | FFCP PHASE2:Hg19::chr10:92173191..92173202,+#_87f4dbdec69ae53223af6bb6026019be | p@chr10:92173191..92173202, + |
| 1.11e-34 | FFCP PHASE1:Hg19::chr10:92173191..92173202,+#_87f4dbdec69ae53223af6bb6026019be | p@chr10:92173191..92173202, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr16:89686480..89686486,+#_a8004727e0d9a4b738472e064b38922b | p@chr16:89686480..89686486, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chrX:47509466..47509475,-#_a8004727e0d9a4b738472e064b38922b | p@chrX:47509466..47509475, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:37420608..37420609,-#_a8004727e0d9a4b738472e064b38922b | p@chr13:37420608..37420609, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr4:174460524..174460526,+#_a8004727e0d9a4b738472e064b38922b | p2@NBLA00301 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr16:89686480..89686486,+#_a8004727e0d9a4b738472e064b38922b | p@chr16:89686480..89686486, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:37420608..37420609,-#_a8004727e0d9a4b738472e064b38922b | p@chr13:37420608..37420609, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chrX:47509466..47509475,-#_a8004727e0d9a4b738472e064b38922b | p@chrX:47509466..47509475, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr4:174460524..174460526,+#_a8004727e0d9a4b738472e064b38922b | p2@NBLA00301 |
| 8.39e-34 | FFCP PHASE2:Hg19::chr2:38148042..38148060,+#_bc768dc3847dda896c1771088da675b6 | p@chr2:38148042..38148060, + |
| 8.39e-34 | FFCP PHASE1:Hg19::chr2:38148042..38148060,+#_bc768dc3847dda896c1771088da675b6 | p@chr2:38148042..38148060, + |
| 1.17e-33 | FFCP PHASE2:Hg19::chrX:107681458..107681465,-#_efe7f525dac10ae73f90f58a0f414c76 | p7@COL4A6 |
| 1.17e-33 | FFCP PHASE1:Hg19::chrX:107681458..107681465,-#_efe7f525dac10ae73f90f58a0f414c76 | p7@COL4A6 |
| 1.64e-33 | FFCP PHASE1:Hg19::chr12:105258734..105258750,+#_8ade20a76713b3a592b5fceb9fb94336 | p@chr12:105258734..105258750, + |
| 1.64e-33 | FFCP PHASE2:Hg19::chr12:105258734..105258750,+#_8ade20a76713b3a592b5fceb9fb94336 | p@chr12:105258734..105258750, + |
| 1.93e-33 | FFCP PHASE1:Hg19::chr9:12701203..12701216,+#_71ece31a484b22a8069101d9b60a82cf | p18@TYRP1 |
| 1.93e-33 | FFCP PHASE2:Hg19::chr9:12701203..12701216,+#_71ece31a484b22a8069101d9b60a82cf | p18@TYRP1 |
| 5.37e-32 | FFCP PHASE1:Hg19::chr2:188415649..188415664,-#_bcc772d1dd475dada70d2cd7e21ff3da | p@chr2:188415649..188415664, - |
| 5.37e-32 | FFCP PHASE2:Hg19::chr2:188415649..188415664,-#_bcc772d1dd475dada70d2cd7e21ff3da | p@chr2:188415649..188415664, - |
| 1.17e-31 | FFCP PHASE2:Hg19::chr2:102720962..102720971,+#_8f547d4bc80df1f24a67499de4dbe25d | p27@IL1R1 |
| 1.17e-31 | FFCP PHASE1:Hg19::chr2:102720962..102720971,+#_8f547d4bc80df1f24a67499de4dbe25d | p27@IL1R1 |
| 1.37e-31 | FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_3a510958cbd46683551edd6826125d89 | p@chr13:94958134..94958164, + |
| 1.37e-31 | FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_3a510958cbd46683551edd6826125d89 | p@chr13:94958134..94958164, + |
| 4.04e-31 | FFCP PHASE1:Hg19::chrX:119254455..119254468,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6 | p1@ENST00000555831, p1@ENST00000557073 |
| 4.04e-31 | FFCP PHASE2:Hg19::chr16:89687026..89687041,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6 | p7@DPEP1 |
| 4.04e-31 | FFCP PHASE2:Hg19::chrX:119254455..119254468,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6 | p1@ENST00000555831, p1@ENST00000557073 |
| 4.04e-31 | FFCP PHASE1:Hg19::chrX:47373179..47373190,-#_f6a0d96ecbb46e8ece0b9108c9cd12b6 | p2@NUS1P1 |
| 4.04e-31 | FFCP PHASE1:Hg19::chr16:89687026..89687041,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6 | p7@DPEP1 |
| 4.04e-31 | FFCP PHASE2:Hg19::chrX:47373179..47373190,-#_f6a0d96ecbb46e8ece0b9108c9cd12b6 | p2@NUS1P1 |
| 5.5e-31 | FFCP PHASE1:Hg19::chr14:52508902..52508921,-#_74ddcdd68d40305d2369d46437457330 | p5@NID2 |
| 5.5e-31 | FFCP PHASE2:Hg19::chr14:52508902..52508921,-#_74ddcdd68d40305d2369d46437457330 | p5@NID2 |
| 4.49e-30 | FFCP PHASE2:Hg19::chr17:6658878..6658889,+#_a688b302f5e39e3383b523719905c1e6 | p9@XAF1 |
| 4.49e-30 | FFCP PHASE1:Hg19::chr17:6658878..6658889,+#_a688b302f5e39e3383b523719905c1e6 | p9@XAF1 |
| 1.08e-29 | FFCP PHASE2:Hg19::chr5:121490583..121490596,-#_272a8c34a3e19c9934a76f0e24237957 | p1@ENST00000504829 |
| 1.08e-29 | FFCP PHASE1:Hg19::chr5:121490583..121490596,-#_272a8c34a3e19c9934a76f0e24237957 | p1@ENST00000504829 |
| 9.3e-29 | FFCP PHASE2:Hg19::chr2:121480592..121480601,+#_c80bd159da2fc1f08471233a78ac81b8 | p@chr2:121480592..121480601, + |
| 9.3e-29 | FFCP PHASE1:Hg19::chr2:121480592..121480601,+#_c80bd159da2fc1f08471233a78ac81b8 | p@chr2:121480592..121480601, + |
| 4.13e-28 | FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_b5aef320e17613174790ae4d883acbc4 | p5@NR1H4 |
| 4.13e-28 | FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_b5aef320e17613174790ae4d883acbc4 | p5@NR1H4 |
| 2.09e-27 | FFCP PHASE1:Hg19::chr10:102122643..102122654,+#_8d48cb7fecf05340414dbcc073b1a58a | p@chr10:102122643..102122654, + |
| 2.09e-27 | FFCP PHASE2:Hg19::chr10:102122643..102122654,+#_8d48cb7fecf05340414dbcc073b1a58a | p@chr10:102122643..102122654, + |
| 7.96e-27 | FFCP PHASE1:Hg19::chr12:10331605..10331616,+#_f28d92d0d150b2dd442a8b8c94bc4a7c | p5@C12orf59 |
| 7.96e-27 | FFCP PHASE2:Hg19::chr12:10331605..10331616,+#_f28d92d0d150b2dd442a8b8c94bc4a7c | p5@C12orf59 |
