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FANTOM5 Data Summary

Selected data files for FANTOM5 and instructions for bulk download.

FANTOM5 Data

CAGE peaks expression and annotation tables
Pathway enrichment and co-expression cluster analysis
Enhancers
Results of de-novo and Motif activity analyses
Sample ontology, GOstat and ontology term enrichment
CAGE peaks identified as true TSS by TSS classifier

Direct Links to Selected FANTOM5 Files

CAGE peak based annotation table of robust CAGE peaks for human samples
CAGE peak based expression table (read counts) of robust CAGE peaks for human samples with annotation
CAGE peak based expression table (RLE normalized) of robust CAGE peaks for human samples with annotation
CAGE peak based annotation table of robust CAGE peaks for mouse samples
CAGE peak based expression table (read counts) of robust CAGE peaks for mouse samples with annotation
CAGE peak based expression table (RLE normalized) of robust CAGE peaks for mouse samples with annotation

How to download FANTOM5 data

  • Use LFTP command: lftp https://fantom.gsc.riken.jp/5/datafiles/latest/
  • Use http download server: https://fantom.gsc.riken.jp/5/datafiles/latest/ (phase2.0, phase1.3)
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FANTOM5 data by RIKEN is licensed under a Creative Commons Attribution 4.0 International License.
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