FANTOM6 Data Files
Data files produced in the FANTOM6 project
FANTOM6 Experiment Index
An interface to select experiments and produced data in the FANTOM6 project.
FANTOM6 Supplemental Data
Ramilowski et al. 2020
Initial Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping
FANTOM5 Data Summary
Selected data files for FANTOM5 and instructions for bulk download.
A system for extracting subsets of data from selected FANTOM5 data files including phase 1 and 2 expression tables.
A BioMart instance to download user defined subsets of the FANTOM5 promoters.
Transcribed Enhancer Atlas
A database describing enhancer regions defined by CAGE tags in the FANTOM5 project, with samples over the whole human body.
An atlas of human long non-coding RNAs with accurate 5’ ends
FANTOM5 Supplemental Data
Kanamori-Katayama et al. 2011
An automated workflow to sequence CAGE libraries.
Motakis et al. 2013
Redefinition of the human mast cell transcriptome by deep sequencing
Kawaji et al. 2013
Comparison of CAGE and RNA-seq transcriptome profiling using a clonally amplified and single molecule next generation sequencing
Verardo et al. 2014
Heterogeneity of mesenchymal stem cells and signatures in ovarian cancer
Ohmiya et al. 2014
RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation
Lizio et al. 2015
Cell type-specific regulatory networks in TC-YIK cervical cancer cell line
Ramilowski el al. 2015
A draft network of ligand-receptor mediated multicellular signaling in human
Dieterich et al. 2015
Role of human MAFB in lymphatic endothelium
An atlas of miRNAs
Klein et al. 2015
Lymphatic endothelial response to VEGF-C is regulated by HOXD10 transcription factor
An atlas of lncRNAs with accurate 5' ends
Abugessaisa et al. 2016
The FANTOM5 SSTAR sample database
Lizio et al 2017
Systematic analysis of TSSs in avian development