Personal tools

UBERON:0002018

From FANTOM5_SSTAR

Jump to: navigation, search

Name:synovial membrane of synovial joint
Namespace:FANTOM
Definition:"Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
Xrefs:
links:

AEO:0000181
BTO:0001823
EFO:0001393
EHDAA2_RETIRED:0003181
EV:0100143
FMA:9865
GAID:264
galen:SynovialMembrane
[ Joint.png Joint.png]
[ 200px-Synovium.png 200px-Synovium.png]
MA:0000114
MESH:A.02.835.583.443.800
ncithesaurus:Synovial_Membrane
SCTID:361828005

VHOG:0001282
Synonyms: "membrana synovialis capsulae articularis" EXACT LATIN [Wikipedia:Synovial_membrane]
"stratum synoviale" EXACT [FMA:66762, FMA:TA]
"synovial layer" BROAD [FMA:66762]
"synovial membrane" BROAD [AEO:0000181]
"synovium" BROAD [BTO:0001823, VHOG:0001282]
Alt_id: UBERON:FMA_66762-MA_0000114
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0006915(stratified squamous epithelium),UBERON:0007616(layer of synovial tissue),UBERON:0012275(meso-epithelium)
part_of:UBERON:0002217(synovial joint)



Children

part of:CL:0000214 (synovial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002018 (synovial membrane of synovial joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
6.24e-88FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_9fcaafc86a67cf8b25d1f563ce3d490cp31@SEMA3C
6.24e-88FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_9fcaafc86a67cf8b25d1f563ce3d490cp31@SEMA3C
1.71e-66FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_bfd10031937b3b95c73eb3e70c8a442bp@chr18:22150956..22150983, +
1.71e-66FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_bfd10031937b3b95c73eb3e70c8a442bp@chr18:22150956..22150983, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_854820212437d60715e63d21532b30dbp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_854820212437d60715e63d21532b30dbp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_854820212437d60715e63d21532b30dbp@chr1:172134736..172134739, +
2.39e-66FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_854820212437d60715e63d21532b30dbp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_854820212437d60715e63d21532b30dbp1@ENST00000517363
2.39e-66FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_854820212437d60715e63d21532b30dbp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_854820212437d60715e63d21532b30dbp@chr1:172134755..172134764, +
2.39e-66FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_854820212437d60715e63d21532b30dbp9@SKOR1
2.39e-66FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_854820212437d60715e63d21532b30dbp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_854820212437d60715e63d21532b30dbp@chr1:172134736..172134739, +
2.39e-66FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_854820212437d60715e63d21532b30dbp1@ENST00000517363
2.39e-66FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_854820212437d60715e63d21532b30dbp9@SKOR1
2.39e-66FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_854820212437d60715e63d21532b30dbp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_854820212437d60715e63d21532b30dbp@chr1:172134755..172134764, +
1.68e-53FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_3f1192e3cf6ca1e62d0c40361bc1aedcp5@CDCA2
1.68e-53FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_3f1192e3cf6ca1e62d0c40361bc1aedcp5@CDCA2
2.19e-53FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_cb018250cb67b70db100f96aee3a6006p@chr2:242009429..242009432, +
2.19e-53FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_cb018250cb67b70db100f96aee3a6006p@chr2:242009429..242009432, +
2.87e-53FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_65ce77fe30ed06a587ccb327c334563dp@chr12:131476821..131476831, -
2.87e-53FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_65ce77fe30ed06a587ccb327c334563dp@chr12:131476821..131476831, -
1.22e-44FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_a577ba9d21fc0e36122b21c871cf31bcp@chrY:58884631..58884640, +
1.22e-44FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_a577ba9d21fc0e36122b21c871cf31bcp@chrY:58884631..58884640, +
1.8e-38FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_128b0382adb360e644d79f24dfd1c72dp@chr1:142537706..142537723, -
1.8e-38FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_128b0382adb360e644d79f24dfd1c72dp@chr1:142537706..142537723, -
1.85e-36FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_45765bce37c8f09b749a881694c86176p@chr10:131634104..131634108, -
1.85e-36FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_45765bce37c8f09b749a881694c86176p@chr10:131634104..131634108, -
3.33e-34FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_58b854a9c6e5d48df5b37bffb96be472p@chr17:9066265..9066271, +
3.33e-34FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_58b854a9c6e5d48df5b37bffb96be472p@chr17:9066265..9066271, +
4.27e-34FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_ef1637f46a0b5984a7b2f12b56517a83p15@HOXC10
4.27e-34FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr10:135140510..135140524, -
4.27e-34FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr15:68118244..68118272, +
4.27e-34FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_ef1637f46a0b5984a7b2f12b56517a83p5@FZD10
4.27e-34FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr8:78774585..78774589, -
4.27e-34FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr5:1043105..1043109, +
4.27e-34FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr15:68118244..68118272, +
4.27e-34FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr8:78774585..78774589, -
4.27e-34FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr15:68124311..68124318, +
4.27e-34FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_ef1637f46a0b5984a7b2f12b56517a83p1@ENST00000519738
4.27e-34FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_ef1637f46a0b5984a7b2f12b56517a83p1@LOC641364
4.27e-34FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr5:1043105..1043109, +
4.27e-34FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_ef1637f46a0b5984a7b2f12b56517a83p15@HOXC10
4.27e-34FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr12:91435143..91435151, -
4.27e-34FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr10:135140510..135140524, -
4.27e-34FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr12:91435143..91435151, -
4.27e-34FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_ef1637f46a0b5984a7b2f12b56517a83p1@ENST00000519738
4.27e-34FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr15:68124311..68124318, +
4.27e-34FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_ef1637f46a0b5984a7b2f12b56517a83p1@LOC641364
4.27e-34FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_ef1637f46a0b5984a7b2f12b56517a83p5@FZD10
5.51e-34FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_b8b466ef90e4f310a36066c169eddb97p6@ACAN
5.51e-34FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_b8b466ef90e4f310a36066c169eddb97p6@ACAN
5.96e-34FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_9bf8cb7769deb787bf7f7a28123b365ap3@SKOR1
5.96e-34FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_9bf8cb7769deb787bf7f7a28123b365ap11@C6orf132
5.96e-34FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_9bf8cb7769deb787bf7f7a28123b365ap12@HOXC11
5.96e-34FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_9bf8cb7769deb787bf7f7a28123b365ap@chr17:63705566..63705573, -
5.96e-34FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_9bf8cb7769deb787bf7f7a28123b365ap@chr1:172145683..172145699, +
5.96e-34FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_9bf8cb7769deb787bf7f7a28123b365ap11@C6orf132
5.96e-34FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_9bf8cb7769deb787bf7f7a28123b365ap@chr13:73102090..73102097, -
5.96e-34FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_9bf8cb7769deb787bf7f7a28123b365ap@chr13:73102090..73102097, -
5.96e-34FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_9bf8cb7769deb787bf7f7a28123b365ap3@SKOR1
5.96e-34FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_9bf8cb7769deb787bf7f7a28123b365ap@chr17:63705566..63705573, -
5.96e-34FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_9bf8cb7769deb787bf7f7a28123b365ap12@HOXC11
5.96e-34FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_9bf8cb7769deb787bf7f7a28123b365ap@chr1:172145683..172145699, +
7.7e-34FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_f1203ad245862da4e42097dd70ac293dp@chrY:13450855..13450866, +
7.7e-34FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_f1203ad245862da4e42097dd70ac293dp@chrY:13450855..13450866, +
1.46e-31FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_42f2f1dbf574a4034440c5534ab07490p@chr19:18718172..18718197, +
1.46e-31FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_42f2f1dbf574a4034440c5534ab07490p@chr19:18718172..18718197, +
1.71e-30FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_3561435528cc6b720bdb38632ec20d3fp9@ERG
1.71e-30FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_3561435528cc6b720bdb38632ec20d3fp9@ERG
2.3e-30FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_c46d431ef1988f44aba682f1258a42c4p@chr1:186273262..186273282, +
2.3e-30FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_c46d431ef1988f44aba682f1258a42c4p8@ACAN
2.3e-30FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_c46d431ef1988f44aba682f1258a42c4p@chr1:186273262..186273282, +
2.3e-30FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_c46d431ef1988f44aba682f1258a42c4p8@ACAN
7.54e-30FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_11e1ae35198a338b0680e12c871f22bfp@chr1:186276427..186276448, +
7.54e-30FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_11e1ae35198a338b0680e12c871f22bfp@chr1:186276427..186276448, +
8.12e-28FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_922d3a4e6fb86c53b106fde43098f9f2p21@SEMA3C
8.12e-28FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_922d3a4e6fb86c53b106fde43098f9f2p21@SEMA3C
1.39e-27FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_8860cb3916210da69a2a2926b50c82ecp@chr20:48160907..48160918, -
1.39e-27FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_8860cb3916210da69a2a2926b50c82ecp@chr20:48160907..48160918, -
1.82e-27FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_32e1a135ea3e8cfd67d52be22fc9074ep7@WISP2
1.82e-27FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_32e1a135ea3e8cfd67d52be22fc9074ep35@CCNL1
1.82e-27FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_32e1a135ea3e8cfd67d52be22fc9074ep7@WISP2
1.82e-27FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_32e1a135ea3e8cfd67d52be22fc9074ep35@CCNL1
1.82e-27FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_32e1a135ea3e8cfd67d52be22fc9074ep@chr1:142537912..142537938, -
1.82e-27FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_32e1a135ea3e8cfd67d52be22fc9074ep@chr1:142537912..142537938, -
2.08e-27FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_958897092a8f74b93fb4931c8ccd9a70p@chr1:142539672..142539687, -
2.08e-27FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_958897092a8f74b93fb4931c8ccd9a70p@chr6:1609602..1609636, -
2.08e-27FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_958897092a8f74b93fb4931c8ccd9a70p@chr1:142539672..142539687, -
2.08e-27FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_958897092a8f74b93fb4931c8ccd9a70p@chr6:1609602..1609636, -
2.38e-27FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_a78b63540c3f395b3e4cc220262fd96cp2@ENST00000436845
2.38e-27FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_a78b63540c3f395b3e4cc220262fd96cp2@ENST00000436845
3.11e-27FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_fe0796154ecb5f5d902496d086029fd5p15@CFB
3.11e-27FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_fe0796154ecb5f5d902496d086029fd5p15@CFB
3.11e-27FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_fe0796154ecb5f5d902496d086029fd5p@chr16:15680784..15680797, +
3.11e-27FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_fe0796154ecb5f5d902496d086029fd5p@chr16:15680784..15680797, +
4.07e-27FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_541f897488730d7052fd917a6aafbd2dp21@SULF1
4.07e-27FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_541f897488730d7052fd917a6aafbd2dp21@SULF1