Personal tools

CL:0000827

From FANTOM5_SSTAR

Jump to: navigation, search
Name:pro-T cell
Namespace:FANTOM
Definition:"A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149]
Synonyms: "DN1 cell" NARROW []
"DN1 thymocyte" NARROW []
"pro-T lymphocyte" EXACT []
"progenitor T cell" EXACT []
"TN1 cell" NARROW []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000838(lymphoid lineage restricted progenitor cell)
develops_from:CL:0000051(common lymphoid progenitor)



Children


is a:CL:0000894 (DN1 thymic pro-T cell),CL:0002425 (early T lineage precursor)
develops from:CL:0000084 (T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000827 (pro-T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data