CL:0002322
From FANTOM5_SSTAR
Name: | embryonic stem cell | ||
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Namespace: | FANTOM | ||
Definition: | "A stem cell of embryonic origin." [GOC:dsd, GOC:tfm, ISBN:068340007X, PMID:18179856] | ||
Xrefs: |
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Synonyms: | "ESC" EXACT [] | ||
Comments: | This is an in vitro cell type and may be removed in future releases. These cells are reportedly SSEA-4-positive, CD73-negative, and CD324-positive. | ||
Created by: | tmeehan | ||
Creation date: | 2010-09-15T03:44:35Z |
Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.
link to ontology dataset
data
Parents
is_a: | CL:0000034(stem cell),CL:0002321(embryonic cell) |
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Children
derives from: | FF:0101581 (embryonic stem cell line sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12626-134E7 (H9 Embryonic Stem cells, biol_rep1 (H9ES-1))
- 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
- 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
- 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
- 12630-134F2 (H9 Embryoid body cells, melanocytic induction)
- 12631-134F3 (H9 Embryoid body cells, melanocytic induction)
- 12632-134F4 (H9 Embryoid body cells, melanocytic induction)
- 12633-134F5 (H9 Embryoid body cells, melanocytic induction)
- 12634-134F6 (H9 Embryoid body cells, melanocytic induction)
- 12635-134F7 (H9 Embryoid body cells, melanocytic induction)
... further results Mouse (Mus musculus)
- 12626-134E7 (H9 Embryonic Stem cells, biol_rep1 (H9ES-1))
- 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
- 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
- 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
- 12630-134F2 (H9 Embryoid body cells, melanocytic induction)
- 12631-134F3 (H9 Embryoid body cells, melanocytic induction)
- 12632-134F4 (H9 Embryoid body cells, melanocytic induction)
- 12633-134F5 (H9 Embryoid body cells, melanocytic induction)
- 12634-134F6 (H9 Embryoid body cells, melanocytic induction)
- 12635-134F7 (H9 Embryoid body cells, melanocytic induction)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002322 (embryonic stem cell), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
2.45e-195 | FFCP PHASE1:Hg19::chr3:112145303..112145318,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p@chr3:112145303..112145318, - |
2.45e-195 | FFCP PHASE2:Hg19::chr14:21175008..21175030,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p3@ENST00000554286 |
2.45e-195 | FFCP PHASE2:Hg19::chr1:53905039..53905072,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p2@ENST00000443844 |
2.45e-195 | FFCP PHASE1:Hg19::chr1:53905039..53905072,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p2@ENST00000443844 |
2.45e-195 | FFCP PHASE2:Hg19::chr3:112145303..112145318,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p@chr3:112145303..112145318, - |
2.45e-195 | FFCP PHASE1:Hg19::chr14:21175008..21175030,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p3@ENST00000554286 |
2.34e-163 | FFCP PHASE2:Hg19::chr14:21175070..21175084,-#_532a34e9366f7a80d7a8a972db2073c7 | p2@ENST00000554286 |
2.34e-163 | FFCP PHASE2:Hg19::chr13:53314077..53314084,-#_532a34e9366f7a80d7a8a972db2073c7 | p5@LECT1 |
2.34e-163 | FFCP PHASE2:Hg19::chr14:21175090..21175105,-#_532a34e9366f7a80d7a8a972db2073c7 | p1@ENST00000554286 |
2.34e-163 | FFCP PHASE1:Hg19::chr14:21175070..21175084,-#_532a34e9366f7a80d7a8a972db2073c7 | p2@ENST00000554286 |
2.34e-163 | FFCP PHASE1:Hg19::chr13:53314077..53314084,-#_532a34e9366f7a80d7a8a972db2073c7 | p5@LECT1 |
2.34e-163 | FFCP PHASE1:Hg19::chr14:21175090..21175105,-#_532a34e9366f7a80d7a8a972db2073c7 | p1@ENST00000554286 |
3.28e-163 | FFCP PHASE2:Hg19::chr2:946449..946463,-#_bc6224dbecb194fbf23e2f45099002a5 | p3@ENST00000456949 |
3.28e-163 | FFCP PHASE1:Hg19::chr2:946449..946463,-#_bc6224dbecb194fbf23e2f45099002a5 | p3@ENST00000456949 |
1.5e-156 | FFCP PHASE2:Hg19::chr2:233286046..233286057,-#_f65e86b642cf4b66f9ed652f07e753f3 | p@chr2:233286046..233286057, - |
1.5e-156 | FFCP PHASE1:Hg19::chr2:233286046..233286057,-#_f65e86b642cf4b66f9ed652f07e753f3 | p@chr2:233286046..233286057, - |
1.5e-156 | FFCP PHASE2:Hg19::chr19:19748353..19748362,-#_f65e86b642cf4b66f9ed652f07e753f3 | p@chr19:19748353..19748362, - |
1.5e-156 | FFCP PHASE1:Hg19::chr19:19748353..19748362,-#_f65e86b642cf4b66f9ed652f07e753f3 | p@chr19:19748353..19748362, - |
1.65e-140 | FFCP PHASE1:Hg19::chr14:47573982..47573999,+#_a45b946a47f5314f13cf7f0a240ed8b7 | p@chr14:47573982..47573999, + |
1.65e-140 | FFCP PHASE2:Hg19::chr14:47573982..47573999,+#_a45b946a47f5314f13cf7f0a240ed8b7 | p@chr14:47573982..47573999, + |
1.65e-140 | FFCP PHASE2:Hg19::chr1:53905204..53905220,-#_a45b946a47f5314f13cf7f0a240ed8b7 | p1@ENST00000443844 |
1.65e-140 | FFCP PHASE1:Hg19::chr1:53905204..53905220,-#_a45b946a47f5314f13cf7f0a240ed8b7 | p1@ENST00000443844 |
2.94e-140 | FFCP PHASE2:Hg19::chr14:96459422..96459424,-#_c0d056a0c3a503358540ca7827c7c461 | p@chr14:96459422..96459424, - |
2.94e-140 | FFCP PHASE1:Hg19::chr14:96459422..96459424,-#_c0d056a0c3a503358540ca7827c7c461 | p@chr14:96459422..96459424, - |
5.23e-140 | FFCP PHASE2:Hg19::chr3:109049145..109049147,-#_1e3913d3660e8a3d9e583e8d391b33fc | p5@DPPA4 |
5.23e-140 | FFCP PHASE1:Hg19::chr3:109049145..109049147,-#_1e3913d3660e8a3d9e583e8d391b33fc | p5@DPPA4 |
9.29e-140 | FFCP PHASE2:Hg19::chr7:125564060..125564062,+#_f052a7e10a9a9b53d5424387fbf168f5 | p@chr7:125564060..125564062, + |
9.29e-140 | FFCP PHASE1:Hg19::chr7:125564060..125564062,+#_f052a7e10a9a9b53d5424387fbf168f5 | p@chr7:125564060..125564062, + |
1.71e-125 | FFCP PHASE2:Hg19::chrX:16595231..16595235,+#_7ad7dfd33919d49c288daba7e24953d8 | p@chrX:16595231..16595235, + |
1.71e-125 | FFCP PHASE1:Hg19::chrX:16595231..16595235,+#_7ad7dfd33919d49c288daba7e24953d8 | p@chrX:16595231..16595235, + |
6.25e-123 | FFCP PHASE1:Hg19::chr19:55603889..55603900,-#_54284521a001e2f3177db5a32b972936 | p@chr19:55603889..55603900, - |
6.25e-123 | FFCP PHASE2:Hg19::chr19:55603889..55603900,-#_54284521a001e2f3177db5a32b972936 | p@chr19:55603889..55603900, - |
1.03e-122 | FFCP PHASE1:Hg19::chr3:109045929..109045945,-#_0d7a632c7cef98dd06b48f70a7b11aae | p@chr3:109045929..109045945, - |
1.03e-122 | FFCP PHASE2:Hg19::chr3:109045929..109045945,-#_0d7a632c7cef98dd06b48f70a7b11aae | p@chr3:109045929..109045945, - |
2.83e-122 | FFCP PHASE1:Hg19::chr3:185797682..185797689,-#_4307a1d068cd16c28d889290e8775527 | p16@ETV5 |
2.83e-122 | FFCP PHASE2:Hg19::chr3:185797682..185797689,-#_4307a1d068cd16c28d889290e8775527 | p16@ETV5 |
3.64e-122 | FFCP PHASE1:Hg19::chr5:12625067..12625085,+#_85e13dd6e8643397844539d1e20c92a8 | p@chr5:12625067..12625085, + |
3.64e-122 | FFCP PHASE2:Hg19::chr5:12625067..12625085,+#_85e13dd6e8643397844539d1e20c92a8 | p@chr5:12625067..12625085, + |
4.68e-122 | FFCP PHASE2:Hg19::chr2:210073840..210073851,-#_e2379b7219546f9cf41432c145ccfc98 | p@chr2:210073840..210073851, - |
4.68e-122 | FFCP PHASE1:Hg19::chr2:210073840..210073851,-#_e2379b7219546f9cf41432c145ccfc98 | p@chr2:210073840..210073851, - |
7.72e-122 | FFCP PHASE2:Hg19::chr17:46608354..46608385,-#_aee9bdfba03ea50736bff098f9d6c4fd | p1@HOXB1 |
7.72e-122 | FFCP PHASE1:Hg19::chr17:46608354..46608385,-#_aee9bdfba03ea50736bff098f9d6c4fd | p1@HOXB1 |
7.76e-118 | FFCP PHASE1:Hg19::chr14:21175067..21175069,-#_97319ad1301df4b73cc441da1fc2ff1f | p4@ENST00000554286 |
7.76e-118 | FFCP PHASE2:Hg19::chr14:21175067..21175069,-#_97319ad1301df4b73cc441da1fc2ff1f | p4@ENST00000554286 |
1.21e-109 | FFCP PHASE2:Hg19::chr2:233285967..233285976,-#_d934384405965aa1d2135354f768ea26 | p@chr2:233285967..233285976, - |
1.21e-109 | FFCP PHASE1:Hg19::chr2:233285967..233285976,-#_d934384405965aa1d2135354f768ea26 | p@chr2:233285967..233285976, - |
1.21e-109 | FFCP PHASE1:Hg19::chr10:58982431..58982442,-#_d934384405965aa1d2135354f768ea26 | p@chr10:58982431..58982442, - |
1.21e-109 | FFCP PHASE2:Hg19::chr2:233285930..233285938,-#_d934384405965aa1d2135354f768ea26 | p@chr2:233285930..233285938, - |
1.21e-109 | FFCP PHASE1:Hg19::chr2:233285930..233285938,-#_d934384405965aa1d2135354f768ea26 | -, p@chr2:233285930..233285938 |
1.21e-109 | FFCP PHASE2:Hg19::chr10:58982431..58982442,-#_d934384405965aa1d2135354f768ea26 | -, p@chr10:58982431..58982442 |
1.51e-109 | FFCP PHASE1:Hg19::chr10:135042855..135042873,+#_fbe3066dab819a3264a845dec939dd95 | p@chr10:135042855..135042873, + |
1.51e-109 | FFCP PHASE2:Hg19::chr2:233285898..233285907,-#_fbe3066dab819a3264a845dec939dd95 | p@chr2:233285898..233285907, - |
1.51e-109 | FFCP PHASE2:Hg19::chr10:135042855..135042873,+#_fbe3066dab819a3264a845dec939dd95 | p@chr10:135042855..135042873, + |
1.51e-109 | FFCP PHASE1:Hg19::chr2:233285898..233285907,-#_fbe3066dab819a3264a845dec939dd95 | p@chr2:233285898..233285907, - |
1.51e-109 | FFCP PHASE1:Hg19::chrX:16594524..16594529,+#_fbe3066dab819a3264a845dec939dd95 | p@chrX:16594524..16594529, + |
1.51e-109 | FFCP PHASE2:Hg19::chrX:16594524..16594529,+#_fbe3066dab819a3264a845dec939dd95 | p@chrX:16594524..16594529, + |
2.37e-109 | FFCP PHASE2:Hg19::chr19:36164312..36164325,+#_a701f83b97e865e207ae5ab0162c6328 | p@chr19:36164312..36164325, + |
2.37e-109 | FFCP PHASE2:Hg19::chr12:95942538..95942549,-#_a701f83b97e865e207ae5ab0162c6328 | p7@USP44 |
2.37e-109 | FFCP PHASE2:Hg19::chr13:56156997..56157026,-#_a701f83b97e865e207ae5ab0162c6328 | p@chr13:56156997..56157026, - |
2.37e-109 | FFCP PHASE1:Hg19::chr13:56156997..56157026,-#_a701f83b97e865e207ae5ab0162c6328 | -, p@chr13:56156997..56157026 |
2.37e-109 | FFCP PHASE1:Hg19::chr19:36164312..36164325,+#_a701f83b97e865e207ae5ab0162c6328 | p@chr19:36164312..36164325, + |
2.37e-109 | FFCP PHASE1:Hg19::chr12:95942538..95942549,-#_a701f83b97e865e207ae5ab0162c6328 | p7@USP44 |
7.24e-109 | FFCP PHASE1:Hg19::chrX:33101294..33101324,-#_79f4e4759080f0c6d0b48fbf675e325d | p@chrX:33101294..33101324, - |
7.24e-109 | FFCP PHASE1:Hg19::chr2:8016767..8016785,+#_79f4e4759080f0c6d0b48fbf675e325d | p@chr2:8016767..8016785, + |
7.24e-109 | FFCP PHASE2:Hg19::chr2:8016767..8016785,+#_79f4e4759080f0c6d0b48fbf675e325d | p@chr2:8016767..8016785, + |
7.24e-109 | FFCP PHASE2:Hg19::chrX:33101294..33101324,-#_79f4e4759080f0c6d0b48fbf675e325d | p@chrX:33101294..33101324, - |
9.05e-109 | FFCP PHASE1:Hg19::chr2:233285959..233285964,-#_f092786b1faf3e21745fe18762d6473f | p@chr2:233285959..233285964, - |
9.05e-109 | FFCP PHASE1:Hg19::chr10:135051422..135051430,+#_f092786b1faf3e21745fe18762d6473f | p2@VENTX |
9.05e-109 | FFCP PHASE2:Hg19::chr10:135051422..135051430,+#_f092786b1faf3e21745fe18762d6473f | p2@VENTX |
9.05e-109 | FFCP PHASE2:Hg19::chr2:233285959..233285964,-#_f092786b1faf3e21745fe18762d6473f | p@chr2:233285959..233285964, - |
1.13e-108 | FFCP PHASE1:Hg19::chr12:59721532..59721540,-#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr12:59721532..59721540, - |
1.13e-108 | FFCP PHASE1:Hg19::chr12:59721677..59721683,-#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr12:59721677..59721683, - |
1.13e-108 | FFCP PHASE2:Hg19::chr12:59721532..59721540,-#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr12:59721532..59721540, - |
1.13e-108 | FFCP PHASE2:Hg19::chr12:59721677..59721683,-#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr12:59721677..59721683, - |
1.13e-108 | FFCP PHASE2:Hg19::chr20:12735430..12735434,+#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr20:12735430..12735434, + |
1.13e-108 | FFCP PHASE1:Hg19::chr20:12735430..12735434,+#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr20:12735430..12735434, + |
1.77e-108 | FFCP PHASE2:Hg19::chr12:97858979..97858990,+#_6c2e7eaa7bcb6da878f2c9b69a626296 | p@chr12:97858979..97858990, + |
1.77e-108 | FFCP PHASE1:Hg19::chr12:97858979..97858990,+#_6c2e7eaa7bcb6da878f2c9b69a626296 | p@chr12:97858979..97858990, + |
2.76e-108 | FFCP PHASE2:Hg19::chr4:187168395..187168407,-#_e47a4da52936b93e0822b4d8a20d8305 | -, p@chr4:187168395..187168407 |
2.76e-108 | FFCP PHASE1:Hg19::chr4:187168395..187168407,-#_e47a4da52936b93e0822b4d8a20d8305 | p@chr4:187168395..187168407, - |
4.31e-108 | FFCP PHASE1:Hg19::chr4:187163408..187163430,+#_ca8a45a44d46ad4558b361dd39f36360 | p@chr4:187163408..187163430, + |
4.31e-108 | FFCP PHASE2:Hg19::chr4:187163408..187163430,+#_ca8a45a44d46ad4558b361dd39f36360 | +, p@chr4:187163408..187163430 |
3.96e-105 | FFCP PHASE1:Hg19::chr19:56163789..56163799,+#_cdb861d8aa7030ea0ec69ac470680c2f | p@chr19:56163789..56163799, + |
3.96e-105 | FFCP PHASE2:Hg19::chr19:56163789..56163799,+#_cdb861d8aa7030ea0ec69ac470680c2f | p@chr19:56163789..56163799, + |
5.18e-105 | FFCP PHASE1:Hg19::chrX:16186799..16186803,-#_390dcbef3ab31b34961c8f6a1aba1862 | p@chrX:16186799..16186803, - |
5.18e-105 | FFCP PHASE2:Hg19::chrX:16186799..16186803,-#_390dcbef3ab31b34961c8f6a1aba1862 | -, p@chrX:16186799..16186803 |
8.85e-105 | FFCP PHASE1:Hg19::chr12:49372099..49372110,+#_d22fdfe93b6878ab3b217faf1705c63a | p4@WNT1 |
8.85e-105 | FFCP PHASE2:Hg19::chr12:49372099..49372110,+#_d22fdfe93b6878ab3b217faf1705c63a | p4@WNT1 |
2.58e-104 | FFCP PHASE1:Hg19::chr2:63271943..63271947,+#_3ead4f8028ae0363ec230ce703e28874 | p22@EHBP1 |
2.58e-104 | FFCP PHASE2:Hg19::chr2:63271943..63271947,+#_3ead4f8028ae0363ec230ce703e28874 | p22@EHBP1 |
2.3e-99 | FFCP PHASE1:Hg19::chr8:132320836..132320868,+#_5b32168fe4af474e2c7a4c45958b76b9 | p1@ENST00000519695, p1@ENST00000524275 |
2.3e-99 | FFCP PHASE2:Hg19::chr8:132320836..132320868,+#_5b32168fe4af474e2c7a4c45958b76b9 | p1@ENST00000519695, p1@ENST00000524275 |
4.22e-99 | FFCP PHASE2:Hg19::chr13:53314109..53314157,-#_e759737ead8090bc2645da3561ab261c | p4@LECT1 |
4.22e-99 | FFCP PHASE1:Hg19::chr13:53314109..53314157,-#_e759737ead8090bc2645da3561ab261c | p4@LECT1 |
6.32e-99 | FFCP PHASE2:Hg19::chr3:32858527..32858538,+#_832a043cc177566762435a80008377a5 | p@chr3:32858527..32858538, + |
6.32e-99 | FFCP PHASE2:Hg19::chr18:29399308..29399314,+#_832a043cc177566762435a80008377a5 | p@chr18:29399308..29399314, + |
6.32e-99 | FFCP PHASE1:Hg19::chr18:29399308..29399314,+#_832a043cc177566762435a80008377a5 | p@chr18:29399308..29399314, + |
6.32e-99 | FFCP PHASE1:Hg19::chr3:32858527..32858538,+#_832a043cc177566762435a80008377a5 | p@chr3:32858527..32858538, + |
9.46e-99 | FFCP PHASE2:Hg19::chr6:131624969..131624980,+#_15eda5a0a3fcb3d2bf3a1543730345a9 | +, p@chr6:131624969..131624980 |
9.46e-99 | FFCP PHASE1:Hg19::chr6:131624969..131624980,+#_15eda5a0a3fcb3d2bf3a1543730345a9 | p@chr6:131624969..131624980, + |