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CL:0002322

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Name:embryonic stem cell
Namespace:FANTOM
Definition:"A stem cell of embryonic origin." [GOC:dsd, GOC:tfm, ISBN:068340007X, PMID:18179856]
Xrefs:
links:

BTO:0001086

FMA:82841
Synonyms: "ESC" EXACT []
Comments:This is an in vitro cell type and may be removed in future releases. These cells are reportedly SSEA-4-positive, CD73-negative, and CD324-positive.
Created by:tmeehan
Creation date:2010-09-15T03:44:35Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data

Parents

is_a:CL:0000034(stem cell),CL:0002321(embryonic cell)



Children


derives from:FF:0101581 (embryonic stem cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 12626-134E7 (H9 Embryonic Stem cells, biol_rep1 (H9ES-1))
  • 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
  • 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
  • 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
  • 12630-134F2 (H9 Embryoid body cells, melanocytic induction)
  • 12631-134F3 (H9 Embryoid body cells, melanocytic induction)
  • 12632-134F4 (H9 Embryoid body cells, melanocytic induction)
  • 12633-134F5 (H9 Embryoid body cells, melanocytic induction)
  • 12634-134F6 (H9 Embryoid body cells, melanocytic induction)
  • 12635-134F7 (H9 Embryoid body cells, melanocytic induction)

... further results Mouse (Mus musculus)

  • 12626-134E7 (H9 Embryonic Stem cells, biol_rep1 (H9ES-1))
  • 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
  • 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
  • 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
  • 12630-134F2 (H9 Embryoid body cells, melanocytic induction)
  • 12631-134F3 (H9 Embryoid body cells, melanocytic induction)
  • 12632-134F4 (H9 Embryoid body cells, melanocytic induction)
  • 12633-134F5 (H9 Embryoid body cells, melanocytic induction)
  • 12634-134F6 (H9 Embryoid body cells, melanocytic induction)
  • 12635-134F7 (H9 Embryoid body cells, melanocytic induction)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002322 (embryonic stem cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
2.45e-195FFCP PHASE1:Hg19::chr3:112145303..112145318,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp@chr3:112145303..112145318, -
2.45e-195FFCP PHASE2:Hg19::chr14:21175008..21175030,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp3@ENST00000554286
2.45e-195FFCP PHASE2:Hg19::chr1:53905039..53905072,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp2@ENST00000443844
2.45e-195FFCP PHASE1:Hg19::chr1:53905039..53905072,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp2@ENST00000443844
2.45e-195FFCP PHASE2:Hg19::chr3:112145303..112145318,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp@chr3:112145303..112145318, -
2.45e-195FFCP PHASE1:Hg19::chr14:21175008..21175030,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp3@ENST00000554286
2.34e-163FFCP PHASE2:Hg19::chr14:21175070..21175084,-#_532a34e9366f7a80d7a8a972db2073c7p2@ENST00000554286
2.34e-163FFCP PHASE2:Hg19::chr13:53314077..53314084,-#_532a34e9366f7a80d7a8a972db2073c7p5@LECT1
2.34e-163FFCP PHASE2:Hg19::chr14:21175090..21175105,-#_532a34e9366f7a80d7a8a972db2073c7p1@ENST00000554286
2.34e-163FFCP PHASE1:Hg19::chr14:21175070..21175084,-#_532a34e9366f7a80d7a8a972db2073c7p2@ENST00000554286
2.34e-163FFCP PHASE1:Hg19::chr13:53314077..53314084,-#_532a34e9366f7a80d7a8a972db2073c7p5@LECT1
2.34e-163FFCP PHASE1:Hg19::chr14:21175090..21175105,-#_532a34e9366f7a80d7a8a972db2073c7p1@ENST00000554286
3.28e-163FFCP PHASE2:Hg19::chr2:946449..946463,-#_bc6224dbecb194fbf23e2f45099002a5p3@ENST00000456949
3.28e-163FFCP PHASE1:Hg19::chr2:946449..946463,-#_bc6224dbecb194fbf23e2f45099002a5p3@ENST00000456949
1.5e-156FFCP PHASE2:Hg19::chr2:233286046..233286057,-#_f65e86b642cf4b66f9ed652f07e753f3p@chr2:233286046..233286057, -
1.5e-156FFCP PHASE1:Hg19::chr2:233286046..233286057,-#_f65e86b642cf4b66f9ed652f07e753f3p@chr2:233286046..233286057, -
1.5e-156FFCP PHASE2:Hg19::chr19:19748353..19748362,-#_f65e86b642cf4b66f9ed652f07e753f3p@chr19:19748353..19748362, -
1.5e-156FFCP PHASE1:Hg19::chr19:19748353..19748362,-#_f65e86b642cf4b66f9ed652f07e753f3p@chr19:19748353..19748362, -
1.65e-140FFCP PHASE1:Hg19::chr14:47573982..47573999,+#_a45b946a47f5314f13cf7f0a240ed8b7p@chr14:47573982..47573999, +
1.65e-140FFCP PHASE2:Hg19::chr14:47573982..47573999,+#_a45b946a47f5314f13cf7f0a240ed8b7p@chr14:47573982..47573999, +
1.65e-140FFCP PHASE2:Hg19::chr1:53905204..53905220,-#_a45b946a47f5314f13cf7f0a240ed8b7p1@ENST00000443844
1.65e-140FFCP PHASE1:Hg19::chr1:53905204..53905220,-#_a45b946a47f5314f13cf7f0a240ed8b7p1@ENST00000443844
2.94e-140FFCP PHASE2:Hg19::chr14:96459422..96459424,-#_c0d056a0c3a503358540ca7827c7c461p@chr14:96459422..96459424, -
2.94e-140FFCP PHASE1:Hg19::chr14:96459422..96459424,-#_c0d056a0c3a503358540ca7827c7c461p@chr14:96459422..96459424, -
5.23e-140FFCP PHASE2:Hg19::chr3:109049145..109049147,-#_1e3913d3660e8a3d9e583e8d391b33fcp5@DPPA4
5.23e-140FFCP PHASE1:Hg19::chr3:109049145..109049147,-#_1e3913d3660e8a3d9e583e8d391b33fcp5@DPPA4
9.29e-140FFCP PHASE2:Hg19::chr7:125564060..125564062,+#_f052a7e10a9a9b53d5424387fbf168f5p@chr7:125564060..125564062, +
9.29e-140FFCP PHASE1:Hg19::chr7:125564060..125564062,+#_f052a7e10a9a9b53d5424387fbf168f5p@chr7:125564060..125564062, +
1.71e-125FFCP PHASE2:Hg19::chrX:16595231..16595235,+#_7ad7dfd33919d49c288daba7e24953d8p@chrX:16595231..16595235, +
1.71e-125FFCP PHASE1:Hg19::chrX:16595231..16595235,+#_7ad7dfd33919d49c288daba7e24953d8p@chrX:16595231..16595235, +
6.25e-123FFCP PHASE1:Hg19::chr19:55603889..55603900,-#_54284521a001e2f3177db5a32b972936p@chr19:55603889..55603900, -
6.25e-123FFCP PHASE2:Hg19::chr19:55603889..55603900,-#_54284521a001e2f3177db5a32b972936p@chr19:55603889..55603900, -
1.03e-122FFCP PHASE1:Hg19::chr3:109045929..109045945,-#_0d7a632c7cef98dd06b48f70a7b11aaep@chr3:109045929..109045945, -
1.03e-122FFCP PHASE2:Hg19::chr3:109045929..109045945,-#_0d7a632c7cef98dd06b48f70a7b11aaep@chr3:109045929..109045945, -
2.83e-122FFCP PHASE1:Hg19::chr3:185797682..185797689,-#_4307a1d068cd16c28d889290e8775527p16@ETV5
2.83e-122FFCP PHASE2:Hg19::chr3:185797682..185797689,-#_4307a1d068cd16c28d889290e8775527p16@ETV5
3.64e-122FFCP PHASE1:Hg19::chr5:12625067..12625085,+#_85e13dd6e8643397844539d1e20c92a8p@chr5:12625067..12625085, +
3.64e-122FFCP PHASE2:Hg19::chr5:12625067..12625085,+#_85e13dd6e8643397844539d1e20c92a8p@chr5:12625067..12625085, +
4.68e-122FFCP PHASE2:Hg19::chr2:210073840..210073851,-#_e2379b7219546f9cf41432c145ccfc98p@chr2:210073840..210073851, -
4.68e-122FFCP PHASE1:Hg19::chr2:210073840..210073851,-#_e2379b7219546f9cf41432c145ccfc98p@chr2:210073840..210073851, -
7.72e-122FFCP PHASE2:Hg19::chr17:46608354..46608385,-#_aee9bdfba03ea50736bff098f9d6c4fdp1@HOXB1
7.72e-122FFCP PHASE1:Hg19::chr17:46608354..46608385,-#_aee9bdfba03ea50736bff098f9d6c4fdp1@HOXB1
7.76e-118FFCP PHASE1:Hg19::chr14:21175067..21175069,-#_97319ad1301df4b73cc441da1fc2ff1fp4@ENST00000554286
7.76e-118FFCP PHASE2:Hg19::chr14:21175067..21175069,-#_97319ad1301df4b73cc441da1fc2ff1fp4@ENST00000554286
1.21e-109FFCP PHASE2:Hg19::chr2:233285967..233285976,-#_d934384405965aa1d2135354f768ea26p@chr2:233285967..233285976, -
1.21e-109FFCP PHASE1:Hg19::chr2:233285967..233285976,-#_d934384405965aa1d2135354f768ea26p@chr2:233285967..233285976, -
1.21e-109FFCP PHASE1:Hg19::chr10:58982431..58982442,-#_d934384405965aa1d2135354f768ea26p@chr10:58982431..58982442, -
1.21e-109FFCP PHASE2:Hg19::chr2:233285930..233285938,-#_d934384405965aa1d2135354f768ea26p@chr2:233285930..233285938, -
1.21e-109FFCP PHASE1:Hg19::chr2:233285930..233285938,-#_d934384405965aa1d2135354f768ea26-, p@chr2:233285930..233285938
1.21e-109FFCP PHASE2:Hg19::chr10:58982431..58982442,-#_d934384405965aa1d2135354f768ea26-, p@chr10:58982431..58982442
1.51e-109FFCP PHASE1:Hg19::chr10:135042855..135042873,+#_fbe3066dab819a3264a845dec939dd95p@chr10:135042855..135042873, +
1.51e-109FFCP PHASE2:Hg19::chr2:233285898..233285907,-#_fbe3066dab819a3264a845dec939dd95p@chr2:233285898..233285907, -
1.51e-109FFCP PHASE2:Hg19::chr10:135042855..135042873,+#_fbe3066dab819a3264a845dec939dd95p@chr10:135042855..135042873, +
1.51e-109FFCP PHASE1:Hg19::chr2:233285898..233285907,-#_fbe3066dab819a3264a845dec939dd95p@chr2:233285898..233285907, -
1.51e-109FFCP PHASE1:Hg19::chrX:16594524..16594529,+#_fbe3066dab819a3264a845dec939dd95p@chrX:16594524..16594529, +
1.51e-109FFCP PHASE2:Hg19::chrX:16594524..16594529,+#_fbe3066dab819a3264a845dec939dd95p@chrX:16594524..16594529, +
2.37e-109FFCP PHASE2:Hg19::chr19:36164312..36164325,+#_a701f83b97e865e207ae5ab0162c6328p@chr19:36164312..36164325, +
2.37e-109FFCP PHASE2:Hg19::chr12:95942538..95942549,-#_a701f83b97e865e207ae5ab0162c6328p7@USP44
2.37e-109FFCP PHASE2:Hg19::chr13:56156997..56157026,-#_a701f83b97e865e207ae5ab0162c6328p@chr13:56156997..56157026, -
2.37e-109FFCP PHASE1:Hg19::chr13:56156997..56157026,-#_a701f83b97e865e207ae5ab0162c6328-, p@chr13:56156997..56157026
2.37e-109FFCP PHASE1:Hg19::chr19:36164312..36164325,+#_a701f83b97e865e207ae5ab0162c6328p@chr19:36164312..36164325, +
2.37e-109FFCP PHASE1:Hg19::chr12:95942538..95942549,-#_a701f83b97e865e207ae5ab0162c6328p7@USP44
7.24e-109FFCP PHASE1:Hg19::chrX:33101294..33101324,-#_79f4e4759080f0c6d0b48fbf675e325dp@chrX:33101294..33101324, -
7.24e-109FFCP PHASE1:Hg19::chr2:8016767..8016785,+#_79f4e4759080f0c6d0b48fbf675e325dp@chr2:8016767..8016785, +
7.24e-109FFCP PHASE2:Hg19::chr2:8016767..8016785,+#_79f4e4759080f0c6d0b48fbf675e325dp@chr2:8016767..8016785, +
7.24e-109FFCP PHASE2:Hg19::chrX:33101294..33101324,-#_79f4e4759080f0c6d0b48fbf675e325dp@chrX:33101294..33101324, -
9.05e-109FFCP PHASE1:Hg19::chr2:233285959..233285964,-#_f092786b1faf3e21745fe18762d6473fp@chr2:233285959..233285964, -
9.05e-109FFCP PHASE1:Hg19::chr10:135051422..135051430,+#_f092786b1faf3e21745fe18762d6473fp2@VENTX
9.05e-109FFCP PHASE2:Hg19::chr10:135051422..135051430,+#_f092786b1faf3e21745fe18762d6473fp2@VENTX
9.05e-109FFCP PHASE2:Hg19::chr2:233285959..233285964,-#_f092786b1faf3e21745fe18762d6473fp@chr2:233285959..233285964, -
1.13e-108FFCP PHASE1:Hg19::chr12:59721532..59721540,-#_c91cf787c9e7ccc81c2602f6efd3151bp@chr12:59721532..59721540, -
1.13e-108FFCP PHASE1:Hg19::chr12:59721677..59721683,-#_c91cf787c9e7ccc81c2602f6efd3151bp@chr12:59721677..59721683, -
1.13e-108FFCP PHASE2:Hg19::chr12:59721532..59721540,-#_c91cf787c9e7ccc81c2602f6efd3151bp@chr12:59721532..59721540, -
1.13e-108FFCP PHASE2:Hg19::chr12:59721677..59721683,-#_c91cf787c9e7ccc81c2602f6efd3151bp@chr12:59721677..59721683, -
1.13e-108FFCP PHASE2:Hg19::chr20:12735430..12735434,+#_c91cf787c9e7ccc81c2602f6efd3151bp@chr20:12735430..12735434, +
1.13e-108FFCP PHASE1:Hg19::chr20:12735430..12735434,+#_c91cf787c9e7ccc81c2602f6efd3151bp@chr20:12735430..12735434, +
1.77e-108FFCP PHASE2:Hg19::chr12:97858979..97858990,+#_6c2e7eaa7bcb6da878f2c9b69a626296p@chr12:97858979..97858990, +
1.77e-108FFCP PHASE1:Hg19::chr12:97858979..97858990,+#_6c2e7eaa7bcb6da878f2c9b69a626296p@chr12:97858979..97858990, +
2.76e-108FFCP PHASE2:Hg19::chr4:187168395..187168407,-#_e47a4da52936b93e0822b4d8a20d8305-, p@chr4:187168395..187168407
2.76e-108FFCP PHASE1:Hg19::chr4:187168395..187168407,-#_e47a4da52936b93e0822b4d8a20d8305p@chr4:187168395..187168407, -
4.31e-108FFCP PHASE1:Hg19::chr4:187163408..187163430,+#_ca8a45a44d46ad4558b361dd39f36360p@chr4:187163408..187163430, +
4.31e-108FFCP PHASE2:Hg19::chr4:187163408..187163430,+#_ca8a45a44d46ad4558b361dd39f36360+, p@chr4:187163408..187163430
3.96e-105FFCP PHASE1:Hg19::chr19:56163789..56163799,+#_cdb861d8aa7030ea0ec69ac470680c2fp@chr19:56163789..56163799, +
3.96e-105FFCP PHASE2:Hg19::chr19:56163789..56163799,+#_cdb861d8aa7030ea0ec69ac470680c2fp@chr19:56163789..56163799, +
5.18e-105FFCP PHASE1:Hg19::chrX:16186799..16186803,-#_390dcbef3ab31b34961c8f6a1aba1862p@chrX:16186799..16186803, -
5.18e-105FFCP PHASE2:Hg19::chrX:16186799..16186803,-#_390dcbef3ab31b34961c8f6a1aba1862-, p@chrX:16186799..16186803
8.85e-105FFCP PHASE1:Hg19::chr12:49372099..49372110,+#_d22fdfe93b6878ab3b217faf1705c63ap4@WNT1
8.85e-105FFCP PHASE2:Hg19::chr12:49372099..49372110,+#_d22fdfe93b6878ab3b217faf1705c63ap4@WNT1
2.58e-104FFCP PHASE1:Hg19::chr2:63271943..63271947,+#_3ead4f8028ae0363ec230ce703e28874p22@EHBP1
2.58e-104FFCP PHASE2:Hg19::chr2:63271943..63271947,+#_3ead4f8028ae0363ec230ce703e28874p22@EHBP1
2.3e-99FFCP PHASE1:Hg19::chr8:132320836..132320868,+#_5b32168fe4af474e2c7a4c45958b76b9p1@ENST00000519695, p1@ENST00000524275
2.3e-99FFCP PHASE2:Hg19::chr8:132320836..132320868,+#_5b32168fe4af474e2c7a4c45958b76b9p1@ENST00000519695, p1@ENST00000524275
4.22e-99FFCP PHASE2:Hg19::chr13:53314109..53314157,-#_e759737ead8090bc2645da3561ab261cp4@LECT1
4.22e-99FFCP PHASE1:Hg19::chr13:53314109..53314157,-#_e759737ead8090bc2645da3561ab261cp4@LECT1
6.32e-99FFCP PHASE2:Hg19::chr3:32858527..32858538,+#_832a043cc177566762435a80008377a5p@chr3:32858527..32858538, +
6.32e-99FFCP PHASE2:Hg19::chr18:29399308..29399314,+#_832a043cc177566762435a80008377a5p@chr18:29399308..29399314, +
6.32e-99FFCP PHASE1:Hg19::chr18:29399308..29399314,+#_832a043cc177566762435a80008377a5p@chr18:29399308..29399314, +
6.32e-99FFCP PHASE1:Hg19::chr3:32858527..32858538,+#_832a043cc177566762435a80008377a5p@chr3:32858527..32858538, +
9.46e-99FFCP PHASE2:Hg19::chr6:131624969..131624980,+#_15eda5a0a3fcb3d2bf3a1543730345a9+, p@chr6:131624969..131624980
9.46e-99FFCP PHASE1:Hg19::chr6:131624969..131624980,+#_15eda5a0a3fcb3d2bf3a1543730345a9p@chr6:131624969..131624980, +

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