CL:0000034
From FANTOM5_SSTAR
| Name: | stem cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A.11.872] | ||
| Xrefs: |
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Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000003(native cell) |
|---|
Children
| is a: | CL:0000723 (somatic stem cell),CL:0002322 (embryonic stem cell) |
|---|---|
| derives from: | FF:0000255 (mouse inner hair stem cell sample),FF:0000626 (trophoblast cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10447-106F6
- 10568-108B1 (mesenchymal stem cell line:Hu5/E18)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11217-116B2 (Mesenchymal stem cells - adipose, donor0)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
... further results Mouse (Mus musculus)
- 10447-106F6
- 10568-108B1 (mesenchymal stem cell line:Hu5/E18)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11217-116B2 (Mesenchymal stem cells - adipose, donor0)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000034 (stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.28e-50 | FFCP PHASE1:Hg19::chr19:48828606..48828637,+#_99d45f4a828f979912c140ca0bcd9bc5 | p2@EMP3 |
| 6.28e-50 | FFCP PHASE2:Hg19::chr19:48828606..48828637,+#_99d45f4a828f979912c140ca0bcd9bc5 | p2@EMP3 |
| 2.07e-48 | FFCP PHASE1:Hg19::chr2:182322231..182322262,+#_83bd3c8a0d3fd5458356a7b759dd4b96 | p2@ITGA4 |
| 2.07e-48 | FFCP PHASE2:Hg19::chr2:182322231..182322262,+#_83bd3c8a0d3fd5458356a7b759dd4b96 | p2@ITGA4 |
| 4.04e-48 | FFCP PHASE2:Hg19::chr1:145096480..145096513,+#_aff3f9a791c485dcb088f74515f95103 | p2@SEC22B |
| 4.04e-48 | FFCP PHASE1:Hg19::chr1:145096480..145096513,+#_aff3f9a791c485dcb088f74515f95103 | p2@SEC22B |
| 2.81e-45 | FFCP PHASE1:Hg19::chr2:74781828..74781898,+#_6ae0d0c9c77feabece35dbfa159776da | p1@DOK1 |
| 2.81e-45 | FFCP PHASE2:Hg19::chr2:74781828..74781898,+#_6ae0d0c9c77feabece35dbfa159776da | p1@DOK1 |
| 1.99e-44 | FFCP PHASE2:Mm9::chr19:18807230..18807233,+#_4d36984376e8b64e1f20ae2fdaee8043 | p1@ENSMUST00000083007 |
| 1.99e-44 | FFCP PHASE1:Mm9::chr19:18807230..18807233,+#_4d36984376e8b64e1f20ae2fdaee8043 | p1@ENSMUST00000083007 |
| 9.15e-44 | FFCP PHASE1:Mm9::chr1:146456236..146456244,-#_603ab3441b0263c50d67d64b5255e8ba | p1@ENSMUST00000157471 |
| 9.15e-44 | FFCP PHASE2:Mm9::chr1:146456236..146456244,-#_603ab3441b0263c50d67d64b5255e8ba | p1@ENSMUST00000157471 |
| 8.75e-43 | FFCP PHASE1:Mm9::chr3:32910877..32910881,+#_9b2de709507ae253c98e92903f1c861f | p1@ENSMUST00000122716 |
| 8.75e-43 | FFCP PHASE2:Mm9::chr3:32910877..32910881,+#_9b2de709507ae253c98e92903f1c861f | p1@ENSMUST00000122716 |
| 1.09e-41 | FFCP PHASE1:Hg19::chr19:48828647..48828658,+#_cf76accab7f6199d1aa05f4006815365 | p3@EMP3 |
| 1.09e-41 | FFCP PHASE2:Hg19::chr19:48828647..48828658,+#_cf76accab7f6199d1aa05f4006815365 | p3@EMP3 |
| 1.54e-41 | FFCP PHASE2:Hg19::chr6:31704075..31704106,-#_376aca33178474988f79edaa43f6c686 | p2@CLIC1 |
| 1.54e-41 | FFCP PHASE1:Hg19::chr6:31704075..31704106,-#_376aca33178474988f79edaa43f6c686 | p2@CLIC1 |
| 9.24e-41 | FFCP PHASE2:Hg19::chr5:78281092..78281154,-#_910e99e0a6f89e2fb78fa58437c22e2c | p1@ARSB |
| 9.24e-41 | FFCP PHASE1:Hg19::chr5:78281092..78281154,-#_910e99e0a6f89e2fb78fa58437c22e2c | p1@ARSB |
| 1.2e-40 | FFCP PHASE1:Hg19::chr2:114647617..114647739,+#_748580aec65a035479109e93d72fd539 | p1@ACTR3 |
| 1.2e-40 | FFCP PHASE2:Hg19::chr2:114647617..114647739,+#_748580aec65a035479109e93d72fd539 | p1@ACTR3 |
| 1.37e-39 | FFCP PHASE1:Mm9::chr4:32085713..32085717,-#_ecedd6ac519aa9ec82f6449f6f561ba9 | p1@ENSMUST00000122491 |
| 1.37e-39 | FFCP PHASE2:Mm9::chr4:32085713..32085717,-#_ecedd6ac519aa9ec82f6449f6f561ba9 | p1@ENSMUST00000122491 |
| 2.57e-39 | FFCP PHASE1:Hg19::chr11:504446..504486,-#_0894102fe20d1dac7732f952c698af7f | p4@RNH1 |
| 2.57e-39 | FFCP PHASE2:Hg19::chr11:504446..504486,-#_0894102fe20d1dac7732f952c698af7f | p4@RNH1 |
| 3.91e-39 | FFCP PHASE1:Mm9::chr4:131826124..131826129,-#_8260206470f42ae13651b98b33b9f12e | p1@ENSMUST00000104135 |
| 3.91e-39 | FFCP PHASE2:Mm9::chr4:131826124..131826129,-#_8260206470f42ae13651b98b33b9f12e | p1@ENSMUST00000104135 |
| 6.79e-39 | FFCP PHASE1:Mm9::chr3:19460250..19460260,+#_4c12f24af5bcfde18d7b8bc22de7a5ea | p1@ENSMUST00000083241 |
| 6.79e-39 | FFCP PHASE2:Mm9::chr3:19460250..19460260,+#_4c12f24af5bcfde18d7b8bc22de7a5ea | p1@ENSMUST00000083241 |
| 1.41e-38 | FFCP PHASE2:Hg19::chr16:50300440..50300485,+#_7625e9afd5ecd0e6a5a28e39c82c64f4 | p1@ADCY7 |
| 1.41e-38 | FFCP PHASE1:Hg19::chr16:50300440..50300485,+#_7625e9afd5ecd0e6a5a28e39c82c64f4 | p1@ADCY7 |
| 4.4e-38 | FFCP PHASE2:Hg19::chr18:18691563..18691610,-#_a38f4d2c8df216a834e719e5451e728f | p4@ROCK1 |
| 4.4e-38 | FFCP PHASE1:Hg19::chr18:18691563..18691610,-#_a38f4d2c8df216a834e719e5451e728f | p4@ROCK1 |
| 8.07e-38 | FFCP PHASE2:Mm9::chr19:26334980..26334985,-#_9fbcd4f9fe0facabc4db60123a8c8619 | p1@ENSMUST00000122640 |
| 8.07e-38 | FFCP PHASE1:Mm9::chr19:26334980..26334985,-#_9fbcd4f9fe0facabc4db60123a8c8619 | p1@ENSMUST00000122640 |
| 1.19e-37 | FFCP PHASE2:Mm9::chr11:48596086..48596090,+#_49ea31cc17f6c8f59637bb9f129c0c62 | p@chr11:48596086..48596090, + |
| 1.19e-37 | FFCP PHASE1:Mm9::chr11:48596086..48596090,+#_49ea31cc17f6c8f59637bb9f129c0c62 | p@chr11:48596086..48596090, + |
| 1.72e-37 | FFCP PHASE2:Hg19::chr2:182322070..182322155,+#_3f806aca252bd2b374b8fee242969812 | p1@ITGA4 |
| 1.72e-37 | FFCP PHASE1:Hg19::chr2:182322070..182322155,+#_3f806aca252bd2b374b8fee242969812 | p1@ITGA4 |
| 7.4e-37 | FFCP PHASE1:Hg19::chr20:61584026..61584096,+#_e60010f6ecbe88de32e739803f124e03 | p1@SLC17A9 |
| 7.4e-37 | FFCP PHASE2:Hg19::chr20:61584026..61584096,+#_e60010f6ecbe88de32e739803f124e03 | p1@SLC17A9 |
| 1.7e-36 | FFCP PHASE2:Hg19::chr15:73076030..73076121,-#_02e60d9d86d32ee37a721b4ee3d34661 | p1@ADPGK |
| 1.7e-36 | FFCP PHASE1:Hg19::chr15:73076030..73076121,-#_02e60d9d86d32ee37a721b4ee3d34661 | p1@ADPGK |
| 1.96e-36 | FFCP PHASE1:Mm9::chr5:115939465..115939467,+#_13a3afab843d1ececc688627a2efa561 | p1@ENSMUST00000102044 |
| 1.96e-36 | FFCP PHASE2:Mm9::chr5:115939465..115939467,+#_13a3afab843d1ececc688627a2efa561 | p1@ENSMUST00000102044 |
| 2.38e-36 | FFCP PHASE2:Mm9::chr10:104477319..104477348,+#_34f5a173a748ca3ed3570427c1e7ede3 | p1@ENSMUST00000082498 |
| 2.38e-36 | FFCP PHASE1:Mm9::chr10:104477319..104477348,+#_34f5a173a748ca3ed3570427c1e7ede3 | p1@ENSMUST00000082498 |
| 4.2e-36 | FFCP PHASE2:Hg19::chr1:183604794..183604908,-#_381c869114de3544ec111d66fd55f5ff | p1@ARPC5 |
| 4.2e-36 | FFCP PHASE1:Hg19::chr1:183604794..183604908,-#_381c869114de3544ec111d66fd55f5ff | p1@ARPC5 |
| 4.29e-36 | FFCP PHASE1:Mm9::chr16:72264646..72264650,-#_3bbec27e120b10446af211a779e08e73 | p@chr16:72264646..72264650, - |
| 4.29e-36 | FFCP PHASE2:Mm9::chr16:72264646..72264650,-#_3bbec27e120b10446af211a779e08e73 | p@chr16:72264646..72264650, - |
| 5.67e-36 | FFCP PHASE2:Mm9::chr3:72925786..72925790,+#_f5cf21a12ffc6e2c67165a418925ec73 | p@chr3:72925786..72925790, + |
| 5.67e-36 | FFCP PHASE1:Mm9::chr3:72925786..72925790,+#_f5cf21a12ffc6e2c67165a418925ec73 | p@chr3:72925786..72925790, + |
| 7.73e-36 | FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_0b5c87d34593483553062ecdb919b857 | p3@ANPEP |
| 7.73e-36 | FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_0b5c87d34593483553062ecdb919b857 | p3@ANPEP |
| 9.41e-36 | FFCP PHASE2:Hg19::chr12:110888103..110888172,-#_c9c57f552251551c9756cebb195708d9 | p1@ARPC3 |
| 9.41e-36 | FFCP PHASE1:Hg19::chr12:110888103..110888172,-#_c9c57f552251551c9756cebb195708d9 | p1@ARPC3 |
| 1.48e-35 | FFCP PHASE2:Mm9::chr14:106660467..106660471,-#_436043f9b28c98037198da0d338edbae | p1@ENSMUST00000083259 |
| 1.48e-35 | FFCP PHASE1:Mm9::chr14:106660467..106660471,-#_436043f9b28c98037198da0d338edbae | p1@ENSMUST00000083259 |
| 1.52e-35 | FFCP PHASE2:Hg19::chr1:145096514..145096528,+#_ace4e7c3468aabd652e61484163377a5 | p3@SEC22B |
| 1.52e-35 | FFCP PHASE1:Hg19::chr1:145096514..145096528,+#_ace4e7c3468aabd652e61484163377a5 | p3@SEC22B |
| 3.22e-35 | FFCP PHASE1:Mm9::chr11:68886926..68886931,+#_c81128b8bb366be4b3c1388b769d56ae | p1@ENSMUST00000082965 |
| 3.22e-35 | FFCP PHASE2:Mm9::chr11:68886926..68886931,+#_c81128b8bb366be4b3c1388b769d56ae | p1@ENSMUST00000082965 |
| 3.55e-35 | FFCP PHASE1:Hg19::chr12:75874580..75874611,+#_2c540ab74538a1768c1d1686842f1c89 | p2@GLIPR1 |
| 3.55e-35 | FFCP PHASE2:Hg19::chr12:75874580..75874611,+#_2c540ab74538a1768c1d1686842f1c89 | p2@GLIPR1 |
| 4.93e-35 | FFCP PHASE1:Hg19::chr2:102091566..102091581,-#_b67e290c205c9ae325724f95d3323886 | p1@RFX8 |
| 4.93e-35 | FFCP PHASE2:Hg19::chr2:102091566..102091581,-#_b67e290c205c9ae325724f95d3323886 | p1@RFX8 |
| 1.03e-34 | FFCP PHASE2:Hg19::chr1:46016703..46016755,+#_c57cd2fbef9bb47cc5ff61677f1e6b17 | p2@AKR1A1 |
| 1.03e-34 | FFCP PHASE1:Hg19::chr1:46016703..46016755,+#_c57cd2fbef9bb47cc5ff61677f1e6b17 | p2@AKR1A1 |
| 2.43e-34 | FFCP PHASE2:Hg19::chr11:504867..504925,-#_be2f43d5bafe9e0c1832dd9fc9be5e41 | p3@RNH1 |
| 2.43e-34 | FFCP PHASE1:Hg19::chr11:504867..504925,-#_be2f43d5bafe9e0c1832dd9fc9be5e41 | p3@RNH1 |
| 2.47e-34 | FFCP PHASE1:Hg19::chr9:35112376..35112395,-#_9dc4c2b2c5f7641f21dc8d866c3bb855 | p@chr9:35112376..35112395, - |
| 2.47e-34 | FFCP PHASE2:Hg19::chr9:35112376..35112395,-#_9dc4c2b2c5f7641f21dc8d866c3bb855 | p@chr9:35112376..35112395, - |
| 4.52e-34 | FFCP PHASE2:Hg19::chr9:101984577..101984616,+#_052f043ea02ac9f2188619e2ef98e4fb | p2@SEC61B |
| 4.52e-34 | FFCP PHASE1:Hg19::chr9:101984577..101984616,+#_052f043ea02ac9f2188619e2ef98e4fb | p2@SEC61B |
| 4.61e-34 | FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_e38d50b6e8eee72da7a469a44f3c1ccc | p1@ANPEP |
| 4.61e-34 | FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_e38d50b6e8eee72da7a469a44f3c1ccc | p1@ANPEP |
| 5.21e-34 | FFCP PHASE2:Hg19::chrX:48432892..48432916,+#_441a7918b12f2b6e9e45290864386a87 | p1@RBM3 |
| 5.21e-34 | FFCP PHASE1:Hg19::chrX:48432892..48432916,+#_441a7918b12f2b6e9e45290864386a87 | p1@RBM3 |
| 1.84e-33 | FFCP PHASE2:Hg19::chr11:504942..504959,-#_876ea0a91bf74c4ce9958dec0de397a8 | p5@RNH1 |
| 1.84e-33 | FFCP PHASE1:Hg19::chr11:504942..504959,-#_876ea0a91bf74c4ce9958dec0de397a8 | p5@RNH1 |
| 2.03e-33 | FFCP PHASE2:Hg19::chr21:26934434..26934452,+#_ebe6e31522490dfd3a631400f6472548 | p1@MIR155HG |
| 2.03e-33 | FFCP PHASE1:Hg19::chr21:26934434..26934452,+#_ebe6e31522490dfd3a631400f6472548 | p1@MIR155HG |
| 2.43e-33 | FFCP PHASE2:Hg19::chr10:17271909..17272033,-#_8148d92ce5cfbc18dd4f8dc9e7db7be4 | p1@uc001iot.1 |
| 2.43e-33 | FFCP PHASE1:Hg19::chr10:17271909..17272033,-#_8148d92ce5cfbc18dd4f8dc9e7db7be4 | p1@uc001iot.1 |
| 2.52e-33 | FFCP PHASE1:Hg19::chr2:192542577..192542595,-#_a71122ef6b5eb4206cab4eff11a79ca3 | p@chr2:192542577..192542595, - |
| 2.52e-33 | FFCP PHASE2:Hg19::chr2:192542577..192542595,-#_a71122ef6b5eb4206cab4eff11a79ca3 | p@chr2:192542577..192542595, - |
| 5.08e-33 | FFCP PHASE2:Mm9::chr4:33051742..33051793,+#_bb81484b456e28595ac794c8fa7cad03 | p1@ENSMUST00000077575 |
| 5.08e-33 | FFCP PHASE1:Mm9::chr4:33051742..33051793,+#_bb81484b456e28595ac794c8fa7cad03 | p1@ENSMUST00000077575 |
| 5.11e-33 | FFCP PHASE1:Hg19::chr11:58345226..58345262,+#_277b9c9b7ad481ab67a178611bacffed | p@chr11:58345226..58345262, + |
| 5.11e-33 | FFCP PHASE2:Hg19::chr11:58345226..58345262,+#_277b9c9b7ad481ab67a178611bacffed | p@chr11:58345226..58345262, + |
| 7.22e-33 | FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_83a35513c9c40fa732f5d59e7524c3c2 | p2@DDOST |
| 7.22e-33 | FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_83a35513c9c40fa732f5d59e7524c3c2 | p2@DDOST |
| 8.55e-33 | FFCP PHASE1:Hg19::chr3:50378235..50378286,-#_8fe161314e880908df1706a2b5c7906d | p2@RASSF1 |
| 8.55e-33 | FFCP PHASE2:Hg19::chr3:50378235..50378286,-#_8fe161314e880908df1706a2b5c7906d | p2@RASSF1 |
| 1.14e-32 | FFCP PHASE2:Hg19::chr4:103747996..103748022,-#_0c4592d8cb8da334bb74468b2f9b75d7 | p4@UBE2D3 |
| 1.14e-32 | FFCP PHASE1:Hg19::chr4:103747996..103748022,-#_0c4592d8cb8da334bb74468b2f9b75d7 | p4@UBE2D3 |
| 1.35e-32 | FFCP PHASE2:Mm9::chr11:68834407..68834410,+#_2b723abca78ecac6585175ee4faafc93 | p@chr11:68834407..68834410, + |
| 1.35e-32 | FFCP PHASE1:Mm9::chr11:68834407..68834410,+#_2b723abca78ecac6585175ee4faafc93 | p@chr11:68834407..68834410, + |
