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CL:0002540

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Name:mesenchymal stem cell of the bone marrow
Namespace:FANTOM
Definition:"A mesenchymal stem cell that is part of the bone marrow." [GOC:tfm]
Created by:tmeehan
Creation date:2011-02-28T01:47:47Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data

Parents

is_a:CL:0000134(mesenchymal cell),CL:0002092(bone marrow cell)
part_of:UBERON:0002371(bone marrow)



Children


is a:FF:0000019 (canine mesenchymal stem cell),FF:0000035 (chicken mesenchymal stem cell),FF:0000149 (rat mesenchymal bone cell)
derives from:FF:0000097 (human mesenchymal stem cell of bone marrow sample),FF:0000112 (mouse mesenchymal stem cell of bone marrow sample),FF:0000269 (human mesenchymal precursor cell of bone marrow sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
  • 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
  • 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
  • 11370-118A2 (Canine Mesenchymal stem cells - bone marrow derived, donor2)
  • 11373-118A5 (Rat Mesenchymal stem cells - bone marrow derived, donor2)
  • 11442-118I2 (Canine Mesenchymal stem cells - bone marrow derived, donor3)
  • 11445-118I5 (Rat Mesenchymal stem cells - bone marrow derived, donor3)
  • 11464-119B6 (Mesenchymal Stem Cells - bone marrow, donor4)
  • 11536-120A6 (Mesenchymal Stem Cells - bone marrow, donor1)
  • 11616-122A5 (Mesenchymal Stem Cells - bone marrow, donor2)

... further results Mouse (Mus musculus)

  • 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
  • 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
  • 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
  • 11370-118A2 (Canine Mesenchymal stem cells - bone marrow derived, donor2)
  • 11373-118A5 (Rat Mesenchymal stem cells - bone marrow derived, donor2)
  • 11442-118I2 (Canine Mesenchymal stem cells - bone marrow derived, donor3)
  • 11445-118I5 (Rat Mesenchymal stem cells - bone marrow derived, donor3)
  • 11464-119B6 (Mesenchymal Stem Cells - bone marrow, donor4)
  • 11536-120A6 (Mesenchymal Stem Cells - bone marrow, donor1)
  • 11616-122A5 (Mesenchymal Stem Cells - bone marrow, donor2)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002540 (mesenchymal stem cell of the bone marrow), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.33e-65FFCP PHASE1:Mm9::chr6:48992901..48992908,-#_59d287555f7a2dadecba117a2236ffa7-, p@chr6:48992901..48992908
1.33e-65FFCP PHASE2:Mm9::chr6:48992901..48992908,-#_59d287555f7a2dadecba117a2236ffa7p@chr6:48992901..48992908, -
6.04e-65FFCP PHASE1:Mm9::chr7:53967438..53967455,+#_4dbae73084f0f66069e0f383e4021f32p@chr7:53967438..53967455, +
6.04e-65FFCP PHASE2:Mm9::chr7:53967438..53967455,+#_4dbae73084f0f66069e0f383e4021f32p@chr7:53967438..53967455, +
4.9e-53FFCP PHASE2:Mm9::chr6:49001848..49001855,+#_f6fd074c6e09ffa1c5264664fced008dp@chr6:49001848..49001855, +
4.9e-53FFCP PHASE1:Mm9::chr6:49001848..49001855,+#_f6fd074c6e09ffa1c5264664fced008dp@chr6:49001848..49001855, +
2.47e-52FFCP PHASE2:Mm9::chr8:125950637..125950639,-#_470fbfa0e8ad08247629c3c65737b959p@chr8:125950637..125950639, -
2.47e-52FFCP PHASE1:Mm9::chr8:125950637..125950639,-#_470fbfa0e8ad08247629c3c65737b959p@chr8:125950637..125950639, -
3.69e-52FFCP PHASE1:Mm9::chr11:8475592..8475595,-#_fbdd4d52216c5575419ce87ea3960bcbp@chr11:8475592..8475595, -
3.69e-52FFCP PHASE2:Mm9::chr11:8475592..8475595,-#_fbdd4d52216c5575419ce87ea3960bcbp@chr11:8475592..8475595, -
5.51e-52FFCP PHASE2:Mm9::chr8:125956453..125956462,-#_62b61edd8ae2a2db4709a2219f95dd70p@chr8:125956453..125956462, -
5.51e-52FFCP PHASE2:Mm9::chr1:122401450..122401455,-#_62b61edd8ae2a2db4709a2219f95dd70p3@Marco
5.51e-52FFCP PHASE1:Mm9::chr8:125956453..125956462,-#_62b61edd8ae2a2db4709a2219f95dd70p@chr8:125956453..125956462, -
5.51e-52FFCP PHASE1:Mm9::chr1:122401450..122401455,-#_62b61edd8ae2a2db4709a2219f95dd70p3@Marco
9.76e-45FFCP PHASE1:Hg19::chr7:7222449..7222458,+#_0ab45a4e79614fe3b83177c85f600013p10@C1GALT1
9.76e-45FFCP PHASE2:Hg19::chr7:7222449..7222458,+#_0ab45a4e79614fe3b83177c85f600013p10@C1GALT1
1.18e-44FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_336dd5ebda4d38c009d180d352d256c9-, p@chr4:136452258..136452269
1.18e-44FFCP PHASE2:Mm9::chr6:48995364..48995370,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48995364..48995370, +
1.18e-44FFCP PHASE2:Mm9::chr6:48997291..48997298,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48997291..48997298, +
1.18e-44FFCP PHASE1:Mm9::chr6:48997291..48997298,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48997291..48997298, +
1.18e-44FFCP PHASE2:Mm9::chr6:48997996..48998006,-#_336dd5ebda4d38c009d180d352d256c9p@chr6:48997996..48998006, -
1.18e-44FFCP PHASE1:Mm9::chr6:48995347..48995356,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48995347..48995356, +
1.18e-44FFCP PHASE1:Mm9::chr6:48997996..48998006,-#_336dd5ebda4d38c009d180d352d256c9p@chr6:48997996..48998006, -
1.18e-44FFCP PHASE1:Mm9::chr6:48995364..48995370,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48995364..48995370, +
1.18e-44FFCP PHASE2:Mm9::chr6:48995347..48995356,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48995347..48995356, +
1.18e-44FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_336dd5ebda4d38c009d180d352d256c9p@chr4:136452258..136452269, -
1.66e-44FFCP PHASE2:Mm9::chr6:48997804..48997812,+#_18c36de9fe319a19a7d0d46b75bd60c4p@chr6:48997804..48997812, +
1.66e-44FFCP PHASE1:Mm9::chr6:48997804..48997812,+#_18c36de9fe319a19a7d0d46b75bd60c4p@chr6:48997804..48997812, +
3.27e-44FFCP PHASE1:Mm9::chr6:48995448..48995454,+#_3352ebbc005d0baadc725b1128f71a51p@chr6:48995448..48995454, +
3.27e-44FFCP PHASE2:Mm9::chr6:48995448..48995454,+#_3352ebbc005d0baadc725b1128f71a51p@chr6:48995448..48995454, +
6.41e-44FFCP PHASE1:Mm9::chr8:125951622..125951629,-#_17a25216cfeb433ebba28fd302be4ee2p@chr8:125951622..125951629, -
6.41e-44FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_17a25216cfeb433ebba28fd302be4ee2p@chr11:69479320..69479327, -
6.41e-44FFCP PHASE1:Mm9::chr8:125956513..125956519,-#_17a25216cfeb433ebba28fd302be4ee2p@chr8:125956513..125956519, -
6.41e-44FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_17a25216cfeb433ebba28fd302be4ee2p@chr11:69479320..69479327, -
6.41e-44FFCP PHASE2:Mm9::chr8:125951622..125951629,-#_17a25216cfeb433ebba28fd302be4ee2-, p@chr8:125951622..125951629
6.41e-44FFCP PHASE2:Mm9::chr8:125956513..125956519,-#_17a25216cfeb433ebba28fd302be4ee2p@chr8:125956513..125956519, -
8.97e-44FFCP PHASE2:Mm9::chr2:157944705..157944714,-#_1e2bd49fb0cedd284859225a531c11d5p@chr2:157944705..157944714, -
8.97e-44FFCP PHASE2:Mm9::chr8:125952972..125952981,-#_1e2bd49fb0cedd284859225a531c11d5p@chr8:125952972..125952981, -
8.97e-44FFCP PHASE1:Mm9::chr1:173159866..173159877,-#_1e2bd49fb0cedd284859225a531c11d5p@chr1:173159866..173159877, -
8.97e-44FFCP PHASE1:Mm9::chr2:157944705..157944714,-#_1e2bd49fb0cedd284859225a531c11d5p@chr2:157944705..157944714, -
8.97e-44FFCP PHASE1:Mm9::chr8:125956179..125956189,-#_1e2bd49fb0cedd284859225a531c11d5p@chr8:125956179..125956189, -
8.97e-44FFCP PHASE1:Mm9::chr8:125952972..125952981,-#_1e2bd49fb0cedd284859225a531c11d5p@chr8:125952972..125952981, -
8.97e-44FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_1e2bd49fb0cedd284859225a531c11d5p@chr10:116715054..116715061, -
8.97e-44FFCP PHASE2:Mm9::chr8:125956179..125956189,-#_1e2bd49fb0cedd284859225a531c11d5p@chr8:125956179..125956189, -
8.97e-44FFCP PHASE2:Mm9::chr1:173159866..173159877,-#_1e2bd49fb0cedd284859225a531c11d5p@chr1:173159866..173159877, -
8.97e-44FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_1e2bd49fb0cedd284859225a531c11d5p@chr10:116715054..116715061, -
1.25e-43FFCP PHASE2:Mm9::chr8:125953346..125953349,-#_a58ab18369f5c5e9fecfb3a3c0ae4521p@chr8:125953346..125953349, -
1.25e-43FFCP PHASE2:Mm9::chr17:57501115..57501124,+#_a58ab18369f5c5e9fecfb3a3c0ae4521p@chr17:57501115..57501124, +
1.25e-43FFCP PHASE1:Mm9::chr8:125953346..125953349,-#_a58ab18369f5c5e9fecfb3a3c0ae4521p@chr8:125953346..125953349, -
1.25e-43FFCP PHASE1:Mm9::chr17:57501115..57501124,+#_a58ab18369f5c5e9fecfb3a3c0ae4521p@chr17:57501115..57501124, +
1.75e-43FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_692606ee02f707981a5fd033301a3381p@chr6:122805870..122805874, -
1.75e-43FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_692606ee02f707981a5fd033301a3381p@chr6:122805870..122805874, -
1.7e-39FFCP PHASE1:Mm9::chr8:124830874..124830875,+#_017b0e3ad086f7b475c264e711707a4fp@chr8:124830874..124830875, +
1.7e-39FFCP PHASE2:Mm9::chr8:124830874..124830875,+#_017b0e3ad086f7b475c264e711707a4fp@chr8:124830874..124830875, +
4.15e-39FFCP PHASE2:Mm9::chr10:93014574..93014575,+#_ec138a7d43bd5c75b0c92ef6d1a41f35p@chr10:93014574..93014575, +
4.15e-39FFCP PHASE1:Mm9::chr10:93014574..93014575,+#_ec138a7d43bd5c75b0c92ef6d1a41f35p@chr10:93014574..93014575, +
1.17e-38FFCP PHASE1:Mm9::chr6:48992765..48992800,+#_a30c777c2f3de9649a4f1fa1c410fa2ep@chr6:48992765..48992800, +
1.17e-38FFCP PHASE2:Mm9::chr6:48992765..48992800,+#_a30c777c2f3de9649a4f1fa1c410fa2ep@chr6:48992765..48992800, +
1.17e-38FFCP PHASE1:Mm9::chr6:48992877..48992890,-#_a30c777c2f3de9649a4f1fa1c410fa2e-, p@chr6:48992877..48992890
1.17e-38FFCP PHASE2:Mm9::chr6:48992877..48992890,-#_a30c777c2f3de9649a4f1fa1c410fa2ep@chr6:48992877..48992890, -
2.79e-38FFCP PHASE2:Mm9::chr8:125952310..125952320,+#_d6e84274fbc596046f820a3ca32921b5p@chr8:125952310..125952320, +
2.79e-38FFCP PHASE1:Mm9::chr8:125952310..125952320,+#_d6e84274fbc596046f820a3ca32921b5p@chr8:125952310..125952320, +
3.73e-38FFCP PHASE1:Mm9::chr19:3941548..3941557,+#_93fb6597e40ef81de1fa66652fe72908p@chr19:3941548..3941557, +
3.73e-38FFCP PHASE2:Mm9::chr19:3941548..3941557,+#_93fb6597e40ef81de1fa66652fe72908p@chr19:3941548..3941557, +
3.73e-38FFCP PHASE2:Mm9::chr8:125952002..125952012,-#_93fb6597e40ef81de1fa66652fe72908p@chr8:125952002..125952012, -
3.73e-38FFCP PHASE1:Mm9::chr8:125952002..125952012,-#_93fb6597e40ef81de1fa66652fe72908p@chr8:125952002..125952012, -
3.73e-38FFCP PHASE2:Mm9::chr8:125951545..125951559,-#_93fb6597e40ef81de1fa66652fe72908p@chr8:125951545..125951559, -
3.73e-38FFCP PHASE1:Mm9::chr8:125951545..125951559,-#_93fb6597e40ef81de1fa66652fe72908p@chr8:125951545..125951559, -
6.64e-38FFCP PHASE2:Mm9::chr8:125956332..125956339,-#_716dcb4d47e687853dccadc63bf7879fp@chr8:125956332..125956339, -
6.64e-38FFCP PHASE2:Mm9::chr6:82983194..82983205,-#_716dcb4d47e687853dccadc63bf7879fp@chr6:82983194..82983205, -
6.64e-38FFCP PHASE2:Mm9::chr8:125951458..125951466,-#_716dcb4d47e687853dccadc63bf7879fp@chr8:125951458..125951466, -
6.64e-38FFCP PHASE1:Mm9::chr8:125956332..125956339,-#_716dcb4d47e687853dccadc63bf7879fp@chr8:125956332..125956339, -
6.64e-38FFCP PHASE1:Mm9::chr8:125951458..125951466,-#_716dcb4d47e687853dccadc63bf7879fp@chr8:125951458..125951466, -
6.64e-38FFCP PHASE1:Mm9::chr6:82983194..82983205,-#_716dcb4d47e687853dccadc63bf7879fp@chr6:82983194..82983205, -
8.86e-38FFCP PHASE2:Mm9::chr17:45733632..45733648,-#_852d2c6f0668bebb1b22c402187392e0p@chr17:45733632..45733648, -
8.86e-38FFCP PHASE1:Mm9::chr17:45733632..45733648,-#_852d2c6f0668bebb1b22c402187392e0p@chr17:45733632..45733648, -
3.67e-34FFCP PHASE1:Mm9::chr6:49006588..49006597,+#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:49006588..49006597, +
3.67e-34FFCP PHASE1:Mm9::chrX:20505898..20505909,-#_1d9a8d44fbab1a21820075b47284aa4dp@chrX:20505898..20505909, -
3.67e-34FFCP PHASE2:Mm9::chr3:87067576..87067584,-#_1d9a8d44fbab1a21820075b47284aa4dp3@Fcrls
3.67e-34FFCP PHASE2:Mm9::chr6:49006588..49006597,+#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:49006588..49006597, +
3.67e-34FFCP PHASE1:Mm9::chr3:87067576..87067584,-#_1d9a8d44fbab1a21820075b47284aa4dp3@Fcrls
3.67e-34FFCP PHASE1:Mm9::chr6:48992884..48992893,+#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:48992884..48992893, +
3.67e-34FFCP PHASE2:Mm9::chr3:87067625..87067636,-#_1d9a8d44fbab1a21820075b47284aa4dp2@Fcrls
3.67e-34FFCP PHASE2:Mm9::chr6:48992884..48992893,+#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:48992884..48992893, +
3.67e-34FFCP PHASE1:Mm9::chr4:136436677..136436688,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr4:136436677..136436688, -
3.67e-34FFCP PHASE1:Mm9::chr3:87067625..87067636,-#_1d9a8d44fbab1a21820075b47284aa4dp2@Fcrls
3.67e-34FFCP PHASE1:Mm9::chr4:136452194..136452198,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr4:136452194..136452198, -
3.67e-34FFCP PHASE2:Mm9::chr4:136436677..136436688,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr4:136436677..136436688, -
3.67e-34FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:48997958..48997979, -
3.67e-34FFCP PHASE2:Mm9::chr4:136452194..136452198,-#_1d9a8d44fbab1a21820075b47284aa4d-, p@chr4:136452194..136452198
3.67e-34FFCP PHASE2:Mm9::chrX:20505898..20505909,-#_1d9a8d44fbab1a21820075b47284aa4dp@chrX:20505898..20505909, -
3.67e-34FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:48997958..48997979, -
4.27e-34FFCP PHASE1:Hg19::chr20:49963208..49963211,-#_a142fd5347312a18c29af0043a6921e6p@chr20:49963208..49963211, -
4.27e-34FFCP PHASE2:Hg19::chr20:49963208..49963211,-#_a142fd5347312a18c29af0043a6921e6p@chr20:49963208..49963211, -
5.98e-34FFCP PHASE1:Hg19::chrX:11455926..11455931,+#_4bdcca92325bbde39db293e1c540fc8cp@chrX:11455926..11455931, +
5.98e-34FFCP PHASE2:Hg19::chrX:11455926..11455931,+#_4bdcca92325bbde39db293e1c540fc8cp@chrX:11455926..11455931, +
6.12e-34FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91p@chr11:69478859..69478867, -
6.12e-34FFCP PHASE2:Mm9::chr5:24046758..24046768,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91p3@Asb10
6.12e-34FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91p@chr11:69478859..69478867, -
6.12e-34FFCP PHASE1:Mm9::chr5:24046758..24046768,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91p3@Asb10

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