UBERON:0002371
From FANTOM5_SSTAR
Name: | bone marrow | |
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Namespace: | FANTOM | |
Definition: | "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]." [Wikipedia:Bone_marrow] | |
Xrefs: |
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Synonyms: |
"anterior kidney" RELATED [] "head kidney" BROAD [] "kidney marrow" RELATED [] "medulla of bone" RELATED [BTO:0000141] "medulla ossea" EXACT [] "medulla ossium" RELATED LATIN [Wikipedia:Bone_marrow] "medulla ossium" RELATED [BTO:0000141] | |
Comments: | TODO - create superclass for bone marrow / head kidney. both are portions of tissue in the hematopoetic system. also consider adding as subclass of zone of bone organ for consistency with FMA. See also: Leydig and epigonal organs | |
Alt_id: | UBERON:FMA_9608-MA_0000134-MIAA_0000084-XAO_0000123-ZFA_0000669 | |
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0012429(hemopoietic tissue) |
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part_of: | UBERON:0001474(bone element),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system) |
Children
derives from: | FF:0010192 (human bone marrow - adult sample),FF:0200020 (osteoclast, bone marrow-derived sample),FF:0200029 (hematopoietic stem cell, bone marrow derived sample) |
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part of: | CL:0000556 (megakaryocyte),CL:0000557 (granulocyte monocyte progenitor cell),CL:0002092 (bone marrow cell),CL:0002476 (bone marrow macrophage),CL:0002540 (mesenchymal stem cell of the bone marrow),UBERON:0007195 (stroma of bone marrow),CL:1001610 (bone marrow hematopoietic cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10192-103E3 (bone marrow, adult)
- 10474-106I6 (myeloma cell line:PCM6)
- 10574-108B7
- 10686-109F2 (bone marrow stromal cell line:StromaNKtert)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10731-110B2
- 10745-110C7
- 10761-110E5
- 10773-110F8
... further results Mouse (Mus musculus)
- 10192-103E3 (bone marrow, adult)
- 10474-106I6 (myeloma cell line:PCM6)
- 10574-108B7
- 10686-109F2 (bone marrow stromal cell line:StromaNKtert)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10731-110B2
- 10745-110C7
- 10761-110E5
- 10773-110F8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002371 (bone marrow), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data