FF:13574-146C1

Name:	COBL-a rinderpest(-C) infection
Species:	Human (Homo sapiens)
Library ID:	CNhs14441
Sample type:	time courses
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information strain UNDEFINED_STRAIN tissue UNDEFINED_TISSUE_TYPE dev stage UNDEFINED_DEV_STAGE sex UNDEFINED_SEX_TYPE age NA cell type UNDEFINED_CELL_TYPE cell line COBL-a company NA collaboration UNDEFINED_COLLABORATION External link for information [{{{sample_info_link}}} {{{sample_info_link}}}] RNA information lot number NA catalog number NA sample type total RNA extraction protocol (Details) NA

CAGE Accession numbers
Method Sample accession id CAGE  SAMD00022190 Library accession numbers Library id Method Exp. accession id Run accession id CNhs14441 CAGE DRX023438 DRR025833 Accession ID Hg19 Library id BAM CTSS CNhs14441 DRZ004258 DRZ005085 Accession ID Hg38 Library id BAM CTSS CNhs14441 DRZ008999 DRZ009826

Download raw sequence, BAM & CTSS
Hg19 Fasta BAM CTSS download download donwload Hg38 BAM CTSS download donwload

RNA-Seq Accession numbers
Method Sample accession id sRNA-Seq  SAMD00022190 Library accession numbers Library id Method Exp. accession id Run accession id SRhi10066.CGTACG sRNA-Seq DRX037333 DRR041699 Accession ID Hg19 Library id BAM CTSS SRhi10066.CGTACG DRZ007341 Accession ID Hg38 Library id BAM CTSS SRhi10066.CGTACG

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
dataNo results for this sample

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

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JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data
library id: CNhs14441This sample isn't target for the analysis

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data
library id: CNhs14441This sample isn't target for the analysis

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs14441

FANTOM5 (FF) ontology

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Direct parent terms

is_a relathionship
FF:0000210 human sample
FF:0000373 24 hr sample
FF:0200009 COBL-a rinderpest infection sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

DOID: Disease
4 (disease)
0050117 (disease by infectious agent)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000373 (24 hr sample)
0200010 (rinderpest infection sample)
0200009 (COBL-a rinderpest infection sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data
NA