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MCL coexpression mm9:132

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:127929959..127929970,-p5@Myl6
Mm9::chr11:3429559..3429595,-p@chr11:3429559..3429595
-
Mm9::chr11:3429910..3429928,-p@chr11:3429910..3429928
-
Mm9::chr11:3430231..3430242,+p1@ENSMUST00000128806
Mm9::chr11:3430911..3430930,+p2@ENSMUST00000123459
Mm9::chr11:3430935..3430962,+p1@ENSMUST00000123459
Mm9::chr11:62389120..62389144,+p8@Trpv2
Mm9::chr12:109609195..109609235,+p6@Eml1
Mm9::chr12:53891970..53892007,+p@chr12:53891970..53892007
+
Mm9::chr13:47161761..47161770,+p8@Kdm1b
Mm9::chr15:83349375..83349379,-p@chr15:83349375..83349379
-
Mm9::chr16:14205593..14205622,+p@chr16:14205593..14205622
+
Mm9::chr16:14207739..14207746,+p@chr16:14207739..14207746
+
Mm9::chr16:14207779..14207821,+p@chr16:14207779..14207821
+
Mm9::chr16:14209676..14209712,+p@chr16:14209676..14209712
+
Mm9::chr16:14215838..14215863,+p@chr16:14215838..14215863
+
Mm9::chr16:14215953..14215973,+p@chr16:14215953..14215973
+
Mm9::chr16:14218999..14219020,+p@chr16:14218999..14219020
+
Mm9::chr16:14291448..14291464,-p1@Myh11
Mm9::chr16:24448168..24448239,+p3@Lpp
Mm9::chr16:24608381..24608412,-p@chr16:24608381..24608412
-
Mm9::chr16:31455191..31455203,+p@chr16:31455191..31455203
+
Mm9::chr16:31455206..31455220,+p@chr16:31455206..31455220
+
Mm9::chr16:31455226..31455246,+p@chr16:31455226..31455246
+
Mm9::chr16:34921604..34921680,+p2@Mylk
Mm9::chr16:34921700..34921722,+p6@Mylk
Mm9::chr16:34921924..34921933,+p9@Mylk
Mm9::chr16:34922180..34922189,+p@chr16:34922180..34922189
+
Mm9::chr16:34994933..34994955,+p3@Mylk
Mm9::chr16:34994964..34995030,+p1@Mylk
Mm9::chr16:34995031..34995045,+p4@Mylk
Mm9::chr16:34995089..34995104,+p7@Mylk
Mm9::chr16:35000600..35000626,+p@chr16:35000600..35000626
+
Mm9::chr16:35000658..35000665,+p@chr16:35000658..35000665
+
Mm9::chr16:35000672..35000681,-p@chr16:35000672..35000681
-
Mm9::chr16:35000722..35000742,+p@chr16:35000722..35000742
+
Mm9::chr16:35001003..35001026,+p@chr16:35001003..35001026
+
Mm9::chr16:35001539..35001551,+p@chr16:35001539..35001551
+
Mm9::chr17:36004948..36004959,+p@chr17:36004948..36004959
+
Mm9::chr18:32090959..32091002,+p2@Lims2
Mm9::chr18:61825055..61825070,-p2@ENSMUST00000154522
p2@uc008fcj.1
Mm9::chr19:34322534..34322538,-p@chr19:34322534..34322538
-
Mm9::chr19:34328691..34328750,-p@chr19:34328691..34328750
-
Mm9::chr1:135795729..135795750,-p@chr1:135795729..135795750
-
Mm9::chr1:135795765..135795791,-p@chr1:135795765..135795791
-
Mm9::chr1:135795792..135795827,-p@chr1:135795792..135795827
-
Mm9::chr1:136700000..136700011,-p1@uc007cso.2
Mm9::chr1:136700292..136700303,-p4@Ppp1r12b
Mm9::chr1:136700319..136700330,-p5@Ppp1r12b
Mm9::chr1:136700357..136700440,-p1@Ppp1r12b
Mm9::chr1:137221347..137221397,+p1@Lmod1
Mm9::chr1:137221399..137221433,+p2@Lmod1
Mm9::chr1:137625790..137625811,+p1@Csrp1
Mm9::chr1:172040446..172040463,-p6@Ddr2
Mm9::chr1:74073497..74073529,-p@chr1:74073497..74073529
-
Mm9::chr1:74073534..74073545,-p@chr1:74073534..74073545
-
Mm9::chr2:156601179..156601205,+p1@Myl9
Mm9::chr3:102538419..102538453,+p3@Tspan2
Mm9::chr4:122555640..122555671,-p@chr4:122555640..122555671
-
Mm9::chr4:21858830..21858875,+p4@6230409E13Rik
Mm9::chr5:93368946..93368957,+p@chr5:93368946..93368957
+
Mm9::chr6:34696016..34696046,-p@chr6:34696016..34696046
-
Mm9::chr6:34696138..34696159,-p@chr6:34696138..34696159
-
Mm9::chr6:34696219..34696246,-p@chr6:34696219..34696246
-
Mm9::chr6:34696460..34696574,-p@chr6:34696460..34696574
-
Mm9::chr6:83470749..83470762,-p@chr6:83470749..83470762
-
Mm9::chr6:83473160..83473180,+p@chr6:83473160..83473180
+
Mm9::chr6:83473185..83473234,+p@chr6:83473185..83473234
+
Mm9::chr6:83473213..83473234,-p@chr6:83473213..83473234
-
Mm9::chr6:83476873..83476892,-p3@Actg2
Mm9::chr6:83476909..83476927,-p6@Actg2
Mm9::chr6:83477339..83477352,-p5@Actg2
Mm9::chr6:83477360..83477367,-p11@Actg2
Mm9::chr6:83486209..83486224,-p1@Actg2
Mm9::chr6:83486393..83486428,-p7@Actg2
Mm9::chr7:19680063..19680088,+p@chr7:19680063..19680088
+
Mm9::chr8:46849311..46849324,+p30@Sorbs2
Mm9::chr9:21903715..21903731,+p1@Cnn1
Mm9::chr9:21904695..21904709,+p@chr9:21904695..21904709
+
Mm9::chr9:21904713..21904728,+p@chr9:21904713..21904728
+
Mm9::chr9:21905519..21905577,+p@chr9:21905519..21905577
+
Mm9::chr9:21905634..21905650,+p@chr9:21905634..21905650
+
Mm9::chr9:21905651..21905666,+p@chr9:21905651..21905666
+
Mm9::chr9:21912544..21912557,+p@chr9:21912544..21912557
+
Mm9::chr9:45738439..45738450,+p@chr9:45738439..45738450
+
Mm9::chr9:45743970..45743986,-p1@Tagln
Mm9::chr9:66895960..66895975,-p@chr9:66895960..66895975
-
Mm9::chrX:71495158..71495179,-p2@Flna


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


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