MCL coexpression mm9:642
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr10:79755159..79755181,+ | p2@LOC100046223 p2@Rps15 |
| Mm9::chr15:5066589..5066629,+ | p2@Gm13826 p2@Rpl37 |
| Mm9::chr1:16094477..16094516,- | p1@Rpl7 |
| Mm9::chr1:39424661..39424693,+ | p2@Gm10191 p2@Gm13004 p2@Gm7689 p2@Gm8759 p2@LOC100505081 p2@LOC638399 p2@Rpl31 |
| Mm9::chr1:72757812..72757826,+ | p2@Gm14173 p2@Rpl37a |
| Mm9::chr2:26766267..26766289,+ | p2@Gm11362 p2@Rpl7a |
| Mm9::chr3:85946515..85946558,- | p1@Rps3a |
| Mm9::chr5:121654486..121654508,+ | p2@Gm6136 p2@Rpl6 |
| Mm9::chr7:25669587..25669626,+ | p1@Rps19-ps4 p1@Rps19-ps6 p1@Rps19 |
| Mm9::chr9:106331730..106331788,+ | p2@Gm10913 p2@Gm13141 p2@Gm13841 p2@Gm6344 p2@Gm6887 p2@Gm8210 p2@Rpl29 |
| Mm9::chrX:99384678..99384703,- | p2@Rps4x |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0005830 | cytosolic ribosome (sensu Eukaryota) | 9.557703969472e-07 |
| GO:0044445 | cytosolic part | 3.70361028817039e-06 |
| GO:0042254 | ribosome biogenesis and assembly | 5.71244485397111e-06 |
| GO:0003735 | structural constituent of ribosome | 7.83096239860434e-06 |
| GO:0005840 | ribosome | 7.83096239860434e-06 |
| GO:0022613 | ribonucleoprotein complex biogenesis and assembly | 1.01992129043795e-05 |
| GO:0005829 | cytosol | 4.99082788914681e-05 |
| GO:0006412 | translation | 8.83646829602944e-05 |
| GO:0030529 | ribonucleoprotein complex | 8.83646829602944e-05 |
| GO:0033279 | ribosomal subunit | 0.000190297560796954 |
| GO:0009059 | macromolecule biosynthetic process | 0.000218456752708339 |
| GO:0044249 | cellular biosynthetic process | 0.000454896551631285 |
| GO:0006996 | organelle organization and biogenesis | 0.000937821005258417 |
| GO:0009058 | biosynthetic process | 0.000966962585761618 |
| GO:0043232 | intracellular non-membrane-bound organelle | 0.0017987821946727 |
| GO:0043228 | non-membrane-bound organelle | 0.0017987821946727 |
| GO:0032991 | macromolecular complex | 0.00409170790312737 |
| GO:0016043 | cellular component organization and biogenesis | 0.00632335480551472 |
| GO:0005843 | cytosolic small ribosomal subunit (sensu Eukaryota) | 0.00677704069835615 |
| GO:0003723 | RNA binding | 0.00703688467131023 |
| GO:0044267 | cellular protein metabolic process | 0.00746877384961488 |
| GO:0044260 | cellular macromolecule metabolic process | 0.00746877384961488 |
| GO:0010467 | gene expression | 0.00746877384961488 |
| GO:0019538 | protein metabolic process | 0.00766292771031945 |
| GO:0019843 | rRNA binding | 0.00845744660960953 |
| GO:0044444 | cytoplasmic part | 0.0101197450132424 |
| GO:0015935 | small ribosomal subunit | 0.0102103889682027 |
| GO:0015934 | large ribosomal subunit | 0.0105009629883662 |
| GO:0005737 | cytoplasm | 0.0463808671729333 |
| GO:0043170 | macromolecule metabolic process | 0.0463808671729333 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br><br>
| Ontology term | p-value | n |
|---|---|---|
| animal cell | 3.25e-08 | 115 |
| eukaryotic cell | 3.25e-08 | 115 |
| stem cell | 4.16e-08 | 97 |
| somatic cell | 4.72e-08 | 118 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.261277 |
| MA0004.1 | 0.330313 |
| MA0006.1 | 0.186435 |
| MA0007.1 | 0.850001 |
| MA0009.1 | 0.743257 |
| MA0014.1 | 0.144697 |
| MA0017.1 | 0.598706 |
| MA0019.1 | 1.39291 |
| MA0024.1 | 0.70077 |
| MA0025.1 | 0.971686 |
| MA0027.1 | 2.37948 |
| MA0028.1 | 4.03288 |
| MA0029.1 | 0.679737 |
| MA0030.1 | 0.686088 |
| MA0031.1 | 0.651724 |
| MA0038.1 | 0.462726 |
| MA0040.1 | 0.755433 |
| MA0041.1 | 0.263922 |
| MA0042.1 | 0.252679 |
| MA0043.1 | 0.837621 |
| MA0046.1 | 0.778239 |
| MA0048.1 | 0.199479 |
| MA0050.1 | 0.365212 |
| MA0051.1 | 1.18756 |
| MA0052.1 | 0.76328 |
| MA0055.1 | 0.0098576 |
| MA0056.1 | 0 |
| MA0057.1 | 0.181039 |
| MA0058.1 | 0.246908 |
| MA0059.1 | 0.257372 |
| MA0060.1 | 0.12537 |
| MA0061.1 | 0.884293 |
| MA0063.1 | 0 |
| MA0066.1 | 0.452472 |
| MA0067.1 | 1.08124 |
| MA0068.1 | 1.12865 |
| MA0069.1 | 0.76361 |
| MA0070.1 | 0.75417 |
| MA0071.1 | 0.364454 |
| MA0072.1 | 0.745922 |
| MA0073.1 | 0.00168399 |
| MA0074.1 | 0.419185 |
| MA0076.1 | 3.43847 |
| MA0077.1 | 0.724865 |
| MA0078.1 | 0.502121 |
| MA0081.1 | 0.760108 |
| MA0083.1 | 0.836845 |
| MA0084.1 | 1.4063 |
| MA0087.1 | 0.794721 |
| MA0088.1 | 0.534411 |
| MA0089.1 | 0 |
| MA0090.1 | 0.299987 |
| MA0091.1 | 0.342071 |
| MA0092.1 | 0.300264 |
| MA0093.1 | 0.20148 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.408523 |
| MA0101.1 | 2.07249 |
| MA0103.1 | 0.216742 |
| MA0105.1 | 0.26272 |
| MA0106.1 | 0.509454 |
| MA0107.1 | 1.79018 |
| MA0108.2 | 0.589413 |
| MA0109.1 | 0 |
| MA0111.1 | 1.51846 |
| MA0113.1 | 0.482899 |
| MA0114.1 | 0.876865 |
| MA0115.1 | 0.84036 |
| MA0116.1 | 0.546914 |
| MA0117.1 | 0.808813 |
| MA0119.1 | 0.265536 |
| MA0122.1 | 0.828211 |
| MA0124.1 | 1.02871 |
| MA0125.1 | 0.955734 |
| MA0130.1 | 0 |
| MA0131.1 | 0.563262 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 0.873285 |
| MA0136.1 | 1.11539 |
| MA0139.1 | 1.14144 |
| MA0140.1 | 0.408417 |
| MA0141.1 | 0.233109 |
| MA0142.1 | 0.63775 |
| MA0143.1 | 0.49828 |
| MA0144.1 | 0.147954 |
| MA0145.1 | 0.133285 |
| MA0146.1 | 0.775515 |
| MA0147.1 | 0.157258 |
| MA0148.1 | 0.344843 |
| MA0149.1 | 0.269772 |
| MA0062.2 | 4.72866 |
| MA0035.2 | 0.412747 |
| MA0039.2 | 1.36945 |
| MA0138.2 | 0.555696 |
| MA0002.2 | 0.343346 |
| MA0137.2 | 0.230686 |
| MA0104.2 | 0.11535 |
| MA0047.2 | 0.46201 |
| MA0112.2 | 0.0329566 |
| MA0065.2 | 0.314773 |
| MA0150.1 | 0.316876 |
| MA0151.1 | 0 |
| MA0152.1 | 0.46211 |
| MA0153.1 | 0.889592 |
| MA0154.1 | 0.195907 |
| MA0155.1 | 0.154271 |
| MA0156.1 | 0.634231 |
| MA0157.1 | 0.606944 |
| MA0158.1 | 0 |
| MA0159.1 | 0.495113 |
| MA0160.1 | 0.347545 |
| MA0161.1 | 0 |
| MA0162.1 | 0.103104 |
| MA0163.1 | 0.563751 |
| MA0164.1 | 0.437937 |
| MA0080.2 | 0.609443 |
| MA0018.2 | 0.446948 |
| MA0099.2 | 0.549696 |
| MA0079.2 | 0.00532751 |
| MA0102.2 | 1.45844 |
| MA0258.1 | 0.135621 |
| MA0259.1 | 0.455671 |
| MA0442.1 | 0 |
