Personal tools

UBERON:0000489

From FANTOM5_SSTAR

Jump to: navigation, search

Name:cavitated compound organ
Namespace:FANTOM
Definition:"Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH]
Xrefs:
links:

AAO:0010016
AEO:0000072
BILA:0000072
CARO:0000072
EHDAA2:0003072
HAO:0000072
TAO:0001490
TGMA:0001857
XAO:0003165

ZFA:0001490
Alt_id: UBERON:CARO_0000072-ZFA_0001490
Subset: organ_slim
upper_level

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0003103(compound organ)



Children

is a:UBERON:0001255 (urinary bladder),UBERON:0002113 (kidney),UBERON:0002240 (spinal cord)


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000489 (cavitated compound organ), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
2.65e-72FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_deb6f0cdb25a51e4f6c816a919b7ebe9p4@PAX2
2.65e-72FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_deb6f0cdb25a51e4f6c816a919b7ebe9p4@PAX2
8.44e-61FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_1f7a4622ff07f48edcf2895344aea486p3@PAX2
8.44e-61FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_1f7a4622ff07f48edcf2895344aea486p3@PAX2
1.18e-58FFCP PHASE1:Hg19::chr2:693380..693398,+#_07b2ed43ad3f0be60cab7189b14ab044p@chr2:693380..693398, +
1.18e-58FFCP PHASE2:Hg19::chr2:693380..693398,+#_07b2ed43ad3f0be60cab7189b14ab044p@chr2:693380..693398, +
2.07e-58FFCP PHASE2:Mm9::chr6:52175944..52175955,-#_f359117c62b3f30f71ce0d2a7ff2f243p@chr6:52175944..52175955, -
2.07e-58FFCP PHASE1:Mm9::chr6:52175944..52175955,-#_f359117c62b3f30f71ce0d2a7ff2f243p@chr6:52175944..52175955, -
1.02e-55FFCP PHASE2:Hg19::chr10:102505327..102505344,+#_f3f0635e80ac49b276644966ae999f87p1@PAX2
1.02e-55FFCP PHASE1:Hg19::chr10:102505327..102505344,+#_f3f0635e80ac49b276644966ae999f87p1@PAX2
7.13e-55FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_ca25a023378a280a37453635a68ef989p7@HOXA10
7.13e-55FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_ca25a023378a280a37453635a68ef989p7@HOXA10
2.46e-53FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_2d4f1f8ea76cd74aa1b4ad6cb392dbb0p2@PAX2
2.46e-53FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_2d4f1f8ea76cd74aa1b4ad6cb392dbb0p2@PAX2
2.56e-53FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_7a408da7c5f5c140c007a6e798e99178p6@Hoxd8
2.56e-53FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_7a408da7c5f5c140c007a6e798e99178p6@Hoxd8
6.92e-53FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_d56b99a476ed036f1a9eee65f744b6a4p4@AIF1L
6.92e-53FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_d56b99a476ed036f1a9eee65f744b6a4p4@AIF1L
2.32e-52FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_1fb25f136569d9e8c81b8e74ac23f659p1@ENST00000418041, p1@ENST00000443104
2.32e-52FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_1fb25f136569d9e8c81b8e74ac23f659p1@ENST00000418041, p1@ENST00000443104
3.45e-51FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_3a9a80c6d0dbaf617e3a669ee5a7ba52p4@MEGF11
3.45e-51FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_3a9a80c6d0dbaf617e3a669ee5a7ba52p4@MEGF11
2.97e-49FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_f043614321bc2588d3f7719a2042612cp8@Hoxd8
2.97e-49FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_f043614321bc2588d3f7719a2042612cp8@Hoxd8
1.81e-48FFCP PHASE2:Mm9::chr11:96132523..96132538,+#_52abcbef38144afc678a52b57999f279p3@Hoxb9
1.81e-48FFCP PHASE1:Mm9::chr11:96132523..96132538,+#_52abcbef38144afc678a52b57999f279p3@Hoxb9
2.05e-48FFCP PHASE1:Mm9::chr19:44831390..44831414,+#_88f86ee6f576ae6840fac355f7f86d06p1@Pax2
2.05e-48FFCP PHASE2:Mm9::chr19:44831390..44831414,+#_88f86ee6f576ae6840fac355f7f86d06p1@Pax2
2.74e-46FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_6915e889449bd78ebe4664fce9dcd959p@chr9:119741711..119741743, -
2.74e-46FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_6915e889449bd78ebe4664fce9dcd959p@chr9:119741711..119741743, -
3.84e-46FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_aff59a4cb35650473b04b97f37d9e169p@chr18:3456189..3456200, +
3.84e-46FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_aff59a4cb35650473b04b97f37d9e169p@chr18:3456189..3456200, +
3.3e-45FFCP PHASE2:Mm9::chr19:44821192..44821202,+#_917cefaf6c33e311413add5ef86516a0p@chr19:44821192..44821202, +
3.3e-45FFCP PHASE1:Mm9::chr19:44821192..44821202,+#_917cefaf6c33e311413add5ef86516a0p@chr19:44821192..44821202, +
3.3e-45FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_917cefaf6c33e311413add5ef86516a0p@chr19:44824107..44824111, -
3.3e-45FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_917cefaf6c33e311413add5ef86516a0p@chr19:44824107..44824111, -
1.62e-43FFCP PHASE2:Mm9::chr2:24331116..24331125,-#_b93f19c51d6ca0070df09e3c326632f3p2@Pax8
1.62e-43FFCP PHASE1:Mm9::chr2:24331116..24331125,-#_b93f19c51d6ca0070df09e3c326632f3p2@Pax8
1.8e-42FFCP PHASE2:Mm9::chr11:96144050..96144065,+#_c79b5ced2b64ebbee7dbefb877dbde22p5@Hoxb8
1.8e-42FFCP PHASE1:Mm9::chr11:96144050..96144065,+#_c79b5ced2b64ebbee7dbefb877dbde22p5@Hoxb8
1.93e-42FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_042efa1882e0172a146b3510e425ee8ap@chr7:7606139..7606151, -
1.93e-42FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_042efa1882e0172a146b3510e425ee8ap@chr7:7606139..7606151, -
1.61e-41FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_a3e5ed35eef59444dd349c49101a378fp@chr10:3291561..3291580, +
1.61e-41FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_a3e5ed35eef59444dd349c49101a378fp@chr10:3291561..3291580, +
3.51e-41FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_cc1c6e9acb693dafa03b2993dbde5123p@chr19:44899724..44899728, +
3.51e-41FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_cc1c6e9acb693dafa03b2993dbde5123p@chr19:44899724..44899728, +
3.51e-41FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_cc1c6e9acb693dafa03b2993dbde5123p@chr19:44821149..44821161, +
3.51e-41FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_cc1c6e9acb693dafa03b2993dbde5123p@chr19:44821149..44821161, +
4.24e-41FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_5bd73a03f412e8c0db51eb1ff399dd2cp1@HOXD4
4.24e-41FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_5bd73a03f412e8c0db51eb1ff399dd2cp1@HOXD4
2.03e-40FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_514090f6a09884624ec6a633f72b5eeep5@PAX2
2.03e-40FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_514090f6a09884624ec6a633f72b5eeep5@PAX2
7.09e-40FFCP PHASE2:Mm9::chr11:96133231..96133247,+#_0f502b4f3f0ff449f6a8e08ec8695831p@chr11:96133231..96133247, +
7.09e-40FFCP PHASE1:Mm9::chr11:96133231..96133247,+#_0f502b4f3f0ff449f6a8e08ec8695831p@chr11:96133231..96133247, +
2.09e-39FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_a0aa528590af62762c6d6a7ee2f29eb8p@chr8:107148422..107148433, +
2.09e-39FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_a0aa528590af62762c6d6a7ee2f29eb8p@chr8:107148422..107148433, +
3.57e-39FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_7012fbe89c42fbe9d0bdc33412218663p2@C14orf105
3.57e-39FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_7012fbe89c42fbe9d0bdc33412218663p2@C14orf105
4.69e-39FFCP PHASE1:Mm9::chr2:74535796..74535808,+#_33f78349c1606afd43f151b9e44cbc64p3@Hoxd9
4.69e-39FFCP PHASE2:Mm9::chr2:74535796..74535808,+#_33f78349c1606afd43f151b9e44cbc64p3@Hoxd9
4.89e-39FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_de5b5fa49ad7c9185fc9b8702408583fp8@PAX2
4.89e-39FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_de5b5fa49ad7c9185fc9b8702408583fp8@PAX2
8.14e-39FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_8a3e7fafc39c3664e1c4f0493168ed6ap@chr1:1100457..1100470, +
8.14e-39FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_8a3e7fafc39c3664e1c4f0493168ed6ap@chr1:1100457..1100470, +
8.57e-39FFCP PHASE2:Mm9::chr16:88563264..88563271,-#_498b3dae34a45ac1de9198aafd9e00e7p@chr16:88563264..88563271, -
8.57e-39FFCP PHASE1:Mm9::chr16:88563264..88563271,-#_498b3dae34a45ac1de9198aafd9e00e7-, p@chr16:88563264..88563271
1.08e-38FFCP PHASE1:Mm9::chr11:96146086..96146100,+#_d0a7c855a0581b69933e6c6c2399a684p@chr11:96146086..96146100, +
1.08e-38FFCP PHASE2:Mm9::chr11:96146086..96146100,+#_d0a7c855a0581b69933e6c6c2399a684p@chr11:96146086..96146100, +
2.14e-38FFCP PHASE2:Mm9::chr19:44821081..44821112,+#_8e471b2b14b04aa07267ef4c4c7c7683p@chr19:44821081..44821112, +
2.14e-38FFCP PHASE1:Mm9::chr19:44821081..44821112,+#_8e471b2b14b04aa07267ef4c4c7c7683p@chr19:44821081..44821112, +
2.33e-38FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_9d99bf8f4cfbbe9d4ee329f583bf21fap@chr10:50689167..50689171, +
2.33e-38FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_9d99bf8f4cfbbe9d4ee329f583bf21fap@chr10:50689167..50689171, +
2.75e-38FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_ae25893f84400c12b5451f5b50868285p@chr5:24755801..24755819, +
2.75e-38FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_ae25893f84400c12b5451f5b50868285p@chr5:24755801..24755819, +
3.25e-38FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_7a67da7304bc5af0f1efcad1594a13e4p@chr19:59532611..59532623, +
3.25e-38FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_7a67da7304bc5af0f1efcad1594a13e4p@chr19:59532611..59532623, +
3.83e-38FFCP PHASE2:Hg19::chr17:46692603..46692621,-#_41ab18e17234d30e606bcaf458603568p6@HOXB8
3.83e-38FFCP PHASE1:Hg19::chr17:46692603..46692621,-#_41ab18e17234d30e606bcaf458603568p6@HOXB8
9.63e-38FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_545f5641efb758cec2e182ca5c9921b4p5@Cldn8
9.63e-38FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_545f5641efb758cec2e182ca5c9921b4p5@Cldn8
1.84e-37FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_32af7a50421600cde0e9be3ce6b8afbbp1@ENSMUST00000154177
1.84e-37FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_32af7a50421600cde0e9be3ce6b8afbbp1@ENSMUST00000154177
2.14e-37FFCP PHASE2:Mm9::chr2:74517725..74517738,+#_6277aee94fd5fbf6ec5182327e192c85p5@Hoxd11
2.14e-37FFCP PHASE1:Mm9::chr2:74517725..74517738,+#_6277aee94fd5fbf6ec5182327e192c85p5@Hoxd11
3.16e-37FFCP PHASE2:Mm9::chr2:74560109..74560131,+#_4c43bafb04deaeea883b082707dd6bc3p1@Hoxd4
3.16e-37FFCP PHASE1:Mm9::chr2:74560109..74560131,+#_4c43bafb04deaeea883b082707dd6bc3p1@Hoxd4
3.58e-37FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_7ea0b1fb235147dbfab1ea0f1a3abc86+, p@chr19:17554168..17554181
3.58e-37FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr2:74971765..74971779, -
3.58e-37FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
3.58e-37FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr10:79277411..79277429, +
3.58e-37FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p7@Steap2
3.58e-37FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p3@uc009jll.1
3.58e-37FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p4@Ros1
3.58e-37FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr10:50622895..50622905, +
3.58e-37FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr8:118959620..118959632, -
3.58e-37FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr7:47891824..47891827, -
3.58e-37FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p3@uc009jll.1
3.58e-37FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr10:39251651..39251690, +
3.58e-37FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr8:118959620..118959632, -
3.58e-37FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p4@Ros1

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0000489&oldid=3277131"