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UBERON:0002240

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Name:spinal cord
Namespace:FANTOM
Definition:"Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord]
Xrefs:
links:

AAO:0010151
BM:SpC
BTO:0001279
EFO:0000110
EHDAA2:0001255
EHDAA:2863
EMAPA:17577
EMAPA:17700
EV:0100316
FMA:7647
GAID:695
[1]
MA:0000216
MAT:0000183
MESH:A.08.186.854
MIAA:0000183
ncithesaurus:Spinal_Cord
NIF_GrossAnatomy:birnlex_1709
OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA
SCTID:180959008
TAO:0000075
VHOG:0000601
XAO:0000020

ZFA:0000075
Synonyms: "medulla spinalis" RELATED [BTO:0001279]
"medulla spinalis" RELATED LATIN [Wikipedia:Spinal_cord]
"spinal cord structure" RELATED [ZFA:0000075]
"spinal medulla" RELATED [BTO:0001279]
Comments:TODO: add superclass to unify with VNC?
Alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000489(cavitated compound organ),UBERON:0004121(ectoderm-derived structure),UBERON:0005174(dorsal region element),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003076(posterior neural tube)
part_of:UBERON:0001017(central nervous system),UBERON:0001137(dorsum)



Children

is a:FF:10359-105E8 (spinal cord, newborn, donor10223)
derives from:FF:0010056 (human spinal cord - fetal sample),FF:0010159 (human spinal cord - adult sample),FF:0011305 (mouse spinal cord- adult sample)
part of:FF:0000198 (astrocyte of spinal cord),UBERON:0001948 (regional part of spinal cord),UBERON:0002315 (gray matter of spinal cord),CL:0002606 (astrocyte of the spinal cord),UBERON:0016550 (spinal cord column)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002240 (spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr8:131864839..131864841,+#_fee0980fbd105249b61718654dd003e5p@chr8:131864839..131864841, +
8.98e-131FFCP PHASE1:Hg19::chr8:131864839..131864841,+#_fee0980fbd105249b61718654dd003e5p@chr8:131864839..131864841, +
3.04e-85FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_2aed28010ad63de6ac48aa0001df549dp@chr17:42993851..42993858, -
3.04e-85FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_2aed28010ad63de6ac48aa0001df549dp@chr17:42993851..42993858, -
4.06e-85FFCP PHASE1:Hg19::chr17:42993904..42993912,-#_efcb82e50f11e4fda3228569936a17a9p@chr17:42993904..42993912, -
4.06e-85FFCP PHASE2:Hg19::chr17:42993904..42993912,-#_efcb82e50f11e4fda3228569936a17a9p@chr17:42993904..42993912, -
4.03e-84FFCP PHASE2:Hg19::chr13:109248336..109248343,+#_99a964903b7746b7b69c851548f36f3fp7@MYO16
4.03e-84FFCP PHASE1:Hg19::chr13:109248336..109248343,+#_99a964903b7746b7b69c851548f36f3fp7@MYO16
4.55e-74FFCP PHASE1:Hg19::chr1:161274636..161274641,-#_03037c75549184efc19579a32fd362f1p@chr1:161274636..161274641, -
4.55e-74FFCP PHASE2:Hg19::chr1:161274636..161274641,-#_03037c75549184efc19579a32fd362f1p@chr1:161274636..161274641, -
2.48e-72FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_258fb0a3c4115d016ff3071a1d4f0603p3@Prrxl1
2.48e-72FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_258fb0a3c4115d016ff3071a1d4f0603p3@Prrxl1
2.48e-72FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_258fb0a3c4115d016ff3071a1d4f0603p@chr2:70053872..70053879, +
2.48e-72FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_258fb0a3c4115d016ff3071a1d4f0603p@chr11:96608388..96608420, +
2.48e-72FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_258fb0a3c4115d016ff3071a1d4f0603p@chr18:84268738..84268777, -
2.48e-72FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_258fb0a3c4115d016ff3071a1d4f0603p@chr18:84268738..84268777, -
2.48e-72FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_258fb0a3c4115d016ff3071a1d4f0603p@chr2:70053872..70053879, +
2.48e-72FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_258fb0a3c4115d016ff3071a1d4f0603p@chr11:96608388..96608420, +
9.82e-67FFCP PHASE1:Hg19::chr16:19800150..19800179,+#_c880192fd7768accdb6ca7fa4d24eb87p@chr16:19800150..19800179, +
9.82e-67FFCP PHASE2:Hg19::chrX:100489588..100489605,+#_c880192fd7768accdb6ca7fa4d24eb87p@chrX:100489588..100489605, +
9.82e-67FFCP PHASE1:Hg19::chrX:100489588..100489605,+#_c880192fd7768accdb6ca7fa4d24eb87p@chrX:100489588..100489605, +
9.82e-67FFCP PHASE2:Hg19::chr16:19800150..19800179,+#_c880192fd7768accdb6ca7fa4d24eb87p@chr16:19800150..19800179, +
1.54e-66FFCP PHASE2:Hg19::chr11:58390160..58390175,+#_343f38d6138209fa0b4120e31b57dc7ap2@CNTF
1.54e-66FFCP PHASE1:Hg19::chr11:58390160..58390175,+#_343f38d6138209fa0b4120e31b57dc7ap2@CNTF
1.71e-66FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_78b46b7b6870ce15b254749bad0dc1ecp@chr1:161275096..161275109, -
1.71e-66FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_78b46b7b6870ce15b254749bad0dc1ecp@chr1:161275096..161275109, -
1.71e-66FFCP PHASE2:Hg19::chr15:46702462..46702465,+#_78b46b7b6870ce15b254749bad0dc1ecp@chr15:46702462..46702465, +
1.71e-66FFCP PHASE1:Hg19::chr15:46702462..46702465,+#_78b46b7b6870ce15b254749bad0dc1ecp@chr15:46702462..46702465, +
2.4e-66FFCP PHASE1:Hg19::chr1:60460743..60460750,+#_6b3324de06f1b234c9c863aab3517a2dp@chr1:60460743..60460750, +
2.4e-66FFCP PHASE2:Hg19::chr1:60460743..60460750,+#_6b3324de06f1b234c9c863aab3517a2dp@chr1:60460743..60460750, +
2.4e-66FFCP PHASE1:Hg19::chr17:42984119..42984130,-#_6b3324de06f1b234c9c863aab3517a2dp43@GFAP
2.4e-66FFCP PHASE2:Hg19::chr17:42984119..42984130,-#_6b3324de06f1b234c9c863aab3517a2dp43@GFAP
3.35e-66FFCP PHASE1:Hg19::chr17:42983263..42983264,-#_38f070c55b31ed62d49420b8ac246832p@chr17:42983263..42983264, -
3.35e-66FFCP PHASE2:Hg19::chr17:42983263..42983264,-#_38f070c55b31ed62d49420b8ac246832p@chr17:42983263..42983264, -
1.35e-65FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_975a2a6a6d82cf1fbb1287c666d1954ap4@Hoxb9
1.35e-65FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_975a2a6a6d82cf1fbb1287c666d1954ap4@Hoxb9
1.71e-64FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_c99df7a95440a70cef022499fe7e075dp6@Slc6a5
1.71e-64FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_c99df7a95440a70cef022499fe7e075dp6@Slc6a5
2.34e-60FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_ade1a99995b8894ff129615462b0cf0bp6@Hoxb8
2.34e-60FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_ade1a99995b8894ff129615462b0cf0bp6@Hoxb8
9.99e-60FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_3305807e2df5447d02f3dbfef8a4f94ep@chr18:77014816..77014819, -
9.99e-60FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_3305807e2df5447d02f3dbfef8a4f94ep@chr18:77014816..77014819, -
4.07e-59FFCP PHASE1:Hg19::chr16:74808506..74808519,-#_4dce5c293c53249d04060b7bb67666fep4@FA2H
4.07e-59FFCP PHASE2:Hg19::chr16:74808506..74808519,-#_4dce5c293c53249d04060b7bb67666fep4@FA2H
6.9e-59FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_fc10ec4e21d02e70f04363598e2374b8p3@Tlx3
6.9e-59FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_fc10ec4e21d02e70f04363598e2374b8p3@Tlx3
1.09e-58FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_f74f4429b884ae6349be6339595fd7b9p1@Uts2
1.09e-58FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_f74f4429b884ae6349be6339595fd7b9p1@Uts2
1.36e-58FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_7888da431a41af1f9f008767f8cc6bf5p@chr11:96146541..96146544, +
1.36e-58FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_7888da431a41af1f9f008767f8cc6bf5p@chr11:96146541..96146544, +
3.91e-58FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_dc6eca90cf960f0418b796dc4a612037p@chr11:96148092..96148105, +
3.91e-58FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_dc6eca90cf960f0418b796dc4a612037p13@Grm5
3.91e-58FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_dc6eca90cf960f0418b796dc4a612037p@chr11:96148092..96148105, +
3.91e-58FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_dc6eca90cf960f0418b796dc4a612037p13@Grm5
2.88e-55FFCP PHASE1:Hg19::chr6:133424178..133424190,-#_5c46cfe3937370d2e6567dcc1d513bb3p@chr6:133424178..133424190, -
2.88e-55FFCP PHASE2:Hg19::chr6:133424178..133424190,-#_5c46cfe3937370d2e6567dcc1d513bb3p@chr6:133424178..133424190, -
4.17e-55FFCP PHASE2:Hg19::chrX:100489564..100489583,+#_e8939c2878b527b16ed489cf27e33b3ap@chrX:100489564..100489583, +
4.17e-55FFCP PHASE1:Hg19::chrX:100489564..100489583,+#_e8939c2878b527b16ed489cf27e33b3ap@chrX:100489564..100489583, +
4.17e-55FFCP PHASE1:Hg19::chr1:161275189..161275203,-#_e8939c2878b527b16ed489cf27e33b3ap@chr1:161275189..161275203, -
4.17e-55FFCP PHASE2:Hg19::chr1:161275189..161275203,-#_e8939c2878b527b16ed489cf27e33b3ap@chr1:161275189..161275203, -
7.24e-55FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_928adb4f3f447dac1186cbef9ba547f9p@chr17:42983316..42983326, -
7.24e-55FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_928adb4f3f447dac1186cbef9ba547f9p@chr17:42983316..42983326, -
1.81e-54FFCP PHASE1:Hg19::chr2:27073036..27073042,-#_5befbe9cfe92e32b8e53544bea9f79b9p@chr2:27073036..27073042, -
1.81e-54FFCP PHASE2:Hg19::chr2:27073036..27073042,-#_5befbe9cfe92e32b8e53544bea9f79b9p@chr2:27073036..27073042, -
1.81e-54FFCP PHASE1:Hg19::chr1:161275111..161275127,-#_5befbe9cfe92e32b8e53544bea9f79b9p@chr1:161275111..161275127, -
1.81e-54FFCP PHASE2:Hg19::chr1:161275111..161275127,-#_5befbe9cfe92e32b8e53544bea9f79b9p@chr1:161275111..161275127, -
2.19e-53FFCP PHASE2:Hg19::chr14:36367955..36367964,+#_0bbea964c3257fb2785f33416d5f997bp@chr14:36367955..36367964, +
2.19e-53FFCP PHASE1:Hg19::chr14:36367955..36367964,+#_0bbea964c3257fb2785f33416d5f997bp@chr14:36367955..36367964, +
2.97e-53FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_801a2e9f3520fe98891f932fb26a9189p1@Gbx1
2.97e-53FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_801a2e9f3520fe98891f932fb26a9189p1@Gbx1
3.75e-53FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_3c9891b01380d7035e0b2102d5dad6c8p@chr11:114146042..114146050, -
3.75e-53FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_3c9891b01380d7035e0b2102d5dad6c8p@chr11:114146042..114146050, -
4.89e-53FFCP PHASE1:Hg19::chr16:7137754..7137799,+#_653991d48ac73311dfd88ef30fbdce1ep@chr16:7137754..7137799, +
4.89e-53FFCP PHASE2:Hg19::chr16:7137754..7137799,+#_653991d48ac73311dfd88ef30fbdce1ep@chr16:7137754..7137799, +
4.89e-53FFCP PHASE1:Hg19::chr1:167905363..167905364,-#_653991d48ac73311dfd88ef30fbdce1ep12@BRP44
4.89e-53FFCP PHASE2:Hg19::chr1:167905363..167905364,-#_653991d48ac73311dfd88ef30fbdce1ep12@BRP44
6.39e-53FFCP PHASE1:Hg19::chr11:119999153..119999163,-#_8d502061023059c9fc0733defc3012cbp24@TRIM29
6.39e-53FFCP PHASE2:Hg19::chr6:151054827..151054836,+#_8d502061023059c9fc0733defc3012cbp23@PLEKHG1
6.39e-53FFCP PHASE1:Hg19::chr6:151054827..151054836,+#_8d502061023059c9fc0733defc3012cbp23@PLEKHG1
6.39e-53FFCP PHASE2:Hg19::chr11:119999153..119999163,-#_8d502061023059c9fc0733defc3012cbp24@TRIM29
1.99e-52FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_7998c739fe4522ca28050ac4ea1adfe9p@chr2:74530108..74530131, +
1.99e-52FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_7998c739fe4522ca28050ac4ea1adfe9p8@Hoxb6
1.99e-52FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_7998c739fe4522ca28050ac4ea1adfe9p8@Hoxb6
1.99e-52FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_7998c739fe4522ca28050ac4ea1adfe9p@chr2:74530108..74530131, +
2.3e-52FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_395b66210d31a638575d4c319a01d95ap3@Slc6a5
2.3e-52FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_395b66210d31a638575d4c319a01d95ap3@Slc6a5
4.11e-52FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_73d7bb4ed97092da66f38eb36a671899p5@Hoxd10
4.11e-52FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_73d7bb4ed97092da66f38eb36a671899p5@Hoxd10
8.11e-51FFCP PHASE1:Hg19::chr17:42989173..42989181,-#_51564c4c13bd8ea04095547d44ad74cbp40@GFAP
8.11e-51FFCP PHASE2:Hg19::chr17:42989173..42989181,-#_51564c4c13bd8ea04095547d44ad74cbp40@GFAP
1.89e-50FFCP PHASE1:Hg19::chr17:42983296..42983307,-#_c5ec8b4397a79d4aa007406b8a8a254ap@chr17:42983296..42983307, -
1.89e-50FFCP PHASE2:Hg19::chr17:42983296..42983307,-#_c5ec8b4397a79d4aa007406b8a8a254ap@chr17:42983296..42983307, -
2.23e-50FFCP PHASE2:Hg19::chrX:103046616..103046621,+#_2aef7ed5593a558fdf072a918be99bc3p@chrX:103046616..103046621, +
2.23e-50FFCP PHASE1:Hg19::chrX:103046616..103046621,+#_2aef7ed5593a558fdf072a918be99bc3p@chrX:103046616..103046621, +
2.23e-50FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_2aef7ed5593a558fdf072a918be99bc3p@chrX:106692569..106692585, +
2.23e-50FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_2aef7ed5593a558fdf072a918be99bc3p@chrX:106692569..106692585, +
1.47e-48FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_c703993c570c40942473b8340ce8b977p1@Npff
1.47e-48FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_c703993c570c40942473b8340ce8b977p1@Npff
2.57e-48FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_d478f467c81168abbf8820c9d97f27c5p12@6330527O06Rik
2.57e-48FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_d478f467c81168abbf8820c9d97f27c5p12@6330527O06Rik










Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.