UBERON:0000923
From FANTOM5_SSTAR
Name: | germ layer | ||
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Namespace: | FANTOM | ||
Definition: | "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [Wikipedia:Germ_layer] | ||
Xrefs: |
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Synonyms: |
"embryonic germ layer" RELATED [] "embryonic germ layers" RELATED [] "embryonic tissue" BROAD [FMA:69069] "germinal layer" EXACT [ncithesaurus:Germinal_Layer] "primary germ layer" NARROW [GO:0001704, ZFA:0001122] | ||
Comments: | Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary | ||
Alt_id: |
UBERON:FBbt_00000110-FMA_69069 UBERON:XAO_0003011-ZFA_0001122 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0010316(germ layer / neural crest) |
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develops_from: | UBERON:0002532(epiblast (generic)) |
part_of: | UBERON:0000922(embryo) |
Children
is a: | UBERON:0000924 (ectoderm),UBERON:0000925 (endoderm),UBERON:0000926 (mesoderm),UBERON:0002346 (neurectoderm) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
- 11947-126B3 (Mesoderm, embryo E8.5)
Mouse (Mus musculus)
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
- 11947-126B3 (Mesoderm, embryo E8.5)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000923 (germ layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
7.5e-31 | FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_d6fc19a7935890aa127aa8226f2a77b1 | p1@CST3 |
7.5e-31 | FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_d6fc19a7935890aa127aa8226f2a77b1 | p1@CST3 |
6.91e-29 | FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_a9ebc310222e830145786a1c53f94285 | p1@KCTD12 |
6.91e-29 | FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_a9ebc310222e830145786a1c53f94285 | p1@KCTD12 |
1.31e-28 | FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_d8d653de90b864f52d9351b3f9c2af1d | p1@TSC22D1 |
1.31e-28 | FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_d8d653de90b864f52d9351b3f9c2af1d | p1@TSC22D1 |
6.82e-28 | FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_e6ffb7204cafbc0d6a26a432cd3ca7f6 | p1@PID1 |
6.82e-28 | FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_e6ffb7204cafbc0d6a26a432cd3ca7f6 | p1@PID1 |
1.74e-26 | FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_a1955bf30b0a6ebc77e5d9ecdab72a40 | p1@DOCK4 |
1.74e-26 | FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_a1955bf30b0a6ebc77e5d9ecdab72a40 | p1@DOCK4 |
4.12e-26 | FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_ebb0d9346463e698d10761cfc8125479 | p1@TOLLIP |
4.12e-26 | FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_ebb0d9346463e698d10761cfc8125479 | p1@TOLLIP |
6.68e-25 | FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_e283cbc56498575bfafff9d7a0e78ff8 | p1@ALDH2 |
6.68e-25 | FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_e283cbc56498575bfafff9d7a0e78ff8 | p1@ALDH2 |
6.83e-25 | FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_3f7cd83d0e6cb39f7bfb2d4459584baa | p3@KCTD12 |
6.83e-25 | FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_3f7cd83d0e6cb39f7bfb2d4459584baa | p3@KCTD12 |
1.27e-24 | FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_bd4de7d31d7b762dabddc72b76c5fadc | p1@WDFY3 |
1.27e-24 | FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_bd4de7d31d7b762dabddc72b76c5fadc | p1@WDFY3 |
6.07e-24 | FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_04c126eafca524c0df0f522b2a4d97fc | p1@ROGDI |
6.07e-24 | FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_04c126eafca524c0df0f522b2a4d97fc | p1@ROGDI |
1.62e-23 | FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_2aab48f21caba8399f7ef1f6e8282ef3 | p1@RGL1 |
1.62e-23 | FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_2aab48f21caba8399f7ef1f6e8282ef3 | p1@RGL1 |
2.33e-23 | FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_81d39089bd998172657a1e0c6d9403fd | p1@PPP2CB |
2.33e-23 | FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_81d39089bd998172657a1e0c6d9403fd | p1@PPP2CB |
2.57e-23 | FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_908f379a9abcc36010bb74ff9d98acc7 | p2@KCTD12 |
2.57e-23 | FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_908f379a9abcc36010bb74ff9d98acc7 | p2@KCTD12 |
4.06e-23 | FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_88a913c4cd8ac89a6837a75014fdd8ab | p2@FAM198B |
4.06e-23 | FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_88a913c4cd8ac89a6837a75014fdd8ab | p2@FAM198B |
6.15e-23 | FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_bda1b97e988205eb09e8ccea398e6fc8 | p1@C15orf38 |
6.15e-23 | FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_bda1b97e988205eb09e8ccea398e6fc8 | p1@C15orf38 |
7.82e-23 | FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_879021b9cbe0c087dae3166a65155a81 | p1@PLD3 |
7.82e-23 | FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_879021b9cbe0c087dae3166a65155a81 | p1@PLD3 |
1.53e-22 | FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_77a6f41d8665242d0bf5c33d022607b9 | p2@ATP6V0C |
1.53e-22 | FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_77a6f41d8665242d0bf5c33d022607b9 | p2@ATP6V0C |
2.37e-22 | FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_8ae59601ad95cc68d3c66e56709cbc6a | p2@SRC |
2.37e-22 | FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_8ae59601ad95cc68d3c66e56709cbc6a | p2@SRC |
5.65e-22 | FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_3eac2ff2c5b47a61ffee050e917983b5 | p1@CDC42EP2 |
5.65e-22 | FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_3eac2ff2c5b47a61ffee050e917983b5 | p1@CDC42EP2 |
5.66e-22 | FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_9433b375a565b8a947cd7fc21bd3630f | p1@PITPNA |
5.66e-22 | FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_9433b375a565b8a947cd7fc21bd3630f | p1@PITPNA |
5.93e-22 | FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_9ad84dd29bbde729eac0230f1333b07f | p1@C3 |
5.93e-22 | FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_9ad84dd29bbde729eac0230f1333b07f | p1@C3 |
6.18e-22 | FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_7292137bb57bc45a6efea5c433f93f08 | p2@TTYH3 |
6.18e-22 | FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_7292137bb57bc45a6efea5c433f93f08 | p2@TTYH3 |
1.1e-21 | FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_5104a88350d2ec3a7ad8638b0faf84ab | p2@BIN1 |
1.1e-21 | FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_5104a88350d2ec3a7ad8638b0faf84ab | p2@BIN1 |
2.41e-21 | FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_4ec43c68e7c8ec63509d62ac512c6b7e | p1@WBP2 |
2.41e-21 | FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_4ec43c68e7c8ec63509d62ac512c6b7e | p1@WBP2 |
3.59e-21 | FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_37f263711065b8140c1c346f21d88471 | p1@TCN2 |
3.59e-21 | FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_37f263711065b8140c1c346f21d88471 | p1@TCN2 |
3.69e-21 | FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_0cbe13bcc973d943af8b833eec481fd2 | p1@NFIB |
3.69e-21 | FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_0cbe13bcc973d943af8b833eec481fd2 | p1@NFIB |
4.02e-21 | FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_78a901a6d350e6ff0ffcdf550a5b35ce | p2@NFIB |
4.02e-21 | FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_78a901a6d350e6ff0ffcdf550a5b35ce | p2@NFIB |
4.54e-21 | FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_0d82654cd3e27d6ddffb2208f68f6ea4 | p1@IRGQ |
4.54e-21 | FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_0d82654cd3e27d6ddffb2208f68f6ea4 | p1@IRGQ |
5.7e-21 | FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_9747b694071a2a740c8d3f5732aaee0e | p1@CCDC149 |
5.7e-21 | FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_9747b694071a2a740c8d3f5732aaee0e | p1@CCDC149 |
6.27e-21 | FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_c9272e8d859e8d60ed1fd5ff1dbc401f | p1@BIN1 |
6.27e-21 | FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_c9272e8d859e8d60ed1fd5ff1dbc401f | p1@BIN1 |
1.02e-20 | FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_29cbdb6ff17f8c11fcfa5474c49daba4 | p1@PRKACA |
1.02e-20 | FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_29cbdb6ff17f8c11fcfa5474c49daba4 | p1@PRKACA |
1.29e-20 | FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_32a44ca7ff296e85dbb977626201e6b8 | p1@C16orf7 |
1.29e-20 | FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_32a44ca7ff296e85dbb977626201e6b8 | p1@C16orf7 |
1.45e-20 | FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_d3cab075e34a1b348d370a8781187ba7 | p1@KIF1B |
1.45e-20 | FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_d3cab075e34a1b348d370a8781187ba7 | p1@KIF1B |
2.63e-20 | FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_3c1b83d380a086de20aeae4da87bb46e | p@chr18:59561635..59561651, - |
2.63e-20 | FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_3c1b83d380a086de20aeae4da87bb46e | p@chr18:59561635..59561651, - |
3.08e-20 | FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_9cd7d920dc88a2f104e087ac6fa05758 | p1@ACVR1B |
3.08e-20 | FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_9cd7d920dc88a2f104e087ac6fa05758 | p1@ACVR1B |
3.96e-20 | FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_d945d05c7665df876afa9b2693f58890 | p@chr20:23614485..23614564, - |
3.96e-20 | FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_d945d05c7665df876afa9b2693f58890 | p@chr20:23614485..23614564, - |
5.35e-20 | FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_4ae723b24b216d1d0b51519df4e53a65 | p1@WLS |
5.35e-20 | FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_4ae723b24b216d1d0b51519df4e53a65 | p1@WLS |
6.51e-20 | FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_5bc82df75fae44bbbe6fa901620014fb | p3@SVIL |
6.51e-20 | FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_5bc82df75fae44bbbe6fa901620014fb | p3@SVIL |
6.99e-20 | FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_6addeff24c7edbadb54ffc2089d92f52 | p1@OAZ2 |
6.99e-20 | FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_6addeff24c7edbadb54ffc2089d92f52 | p1@OAZ2 |
8.06e-20 | FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_7505cc211ab864f8714b4a3533168941 | p1@DNAJB5 |
8.06e-20 | FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_7505cc211ab864f8714b4a3533168941 | p1@DNAJB5 |
9.9e-20 | FFCP PHASE1:Hg19::chrX:100333858..100333876,+#_43d225730c8ebfb91eb54c9993e317f9 | p1@TMEM35 |
9.9e-20 | FFCP PHASE2:Hg19::chrX:100333858..100333876,+#_43d225730c8ebfb91eb54c9993e317f9 | p1@TMEM35 |
1.09e-19 | FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_fdda434a236b1d2c234bf528bbbf7c0c | p1@ATP6V0C |
1.09e-19 | FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_fdda434a236b1d2c234bf528bbbf7c0c | p1@ATP6V0C |
1.11e-19 | FFCP PHASE1:Hg19::chr17:68165657..68165688,+#_cdda5b2c98f92ba10ef9599dde506823 | p1@KCNJ2 |
1.11e-19 | FFCP PHASE2:Hg19::chr17:68165657..68165688,+#_cdda5b2c98f92ba10ef9599dde506823 | p1@KCNJ2 |
1.12e-19 | FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_65e6728cabde2eb76c6197b88eba41e4 | p2@SOX15 |
1.12e-19 | FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_65e6728cabde2eb76c6197b88eba41e4 | p2@SOX15 |
1.16e-19 | FFCP PHASE2:Hg19::chr19:11466086..11466159,+#_8ee9ae46731709a8c547815fd40dd235 | p1@LPPR2 |
1.16e-19 | FFCP PHASE1:Hg19::chr19:11466086..11466159,+#_8ee9ae46731709a8c547815fd40dd235 | p1@LPPR2 |
1.32e-19 | FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_6e9e1dabe916c3754e8a3943f5d54caf | p@chr18:59561658..59561685, - |
1.32e-19 | FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_6e9e1dabe916c3754e8a3943f5d54caf | p@chr18:59561658..59561685, - |
1.38e-19 | FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_e1280981aa8926b063a2333b79dbb56e | p1@ATP2A2 |
1.38e-19 | FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_e1280981aa8926b063a2333b79dbb56e | p1@ATP2A2 |
1.45e-19 | FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_d26c4c52689e8513bc08f09264875664 | p1@SMPDL3A |
1.45e-19 | FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_d26c4c52689e8513bc08f09264875664 | p1@SMPDL3A |
1.86e-19 | FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_e76b7a83cfb20f13d8d599fc875fd563 | p2@KIAA1598 |
1.86e-19 | FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_e76b7a83cfb20f13d8d599fc875fd563 | p2@KIAA1598 |
3.3e-19 | FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_97ae24432c2583828d0547c10f23016b | p1@FMNL2 |
3.3e-19 | FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_97ae24432c2583828d0547c10f23016b | p1@FMNL2 |