Personal tools

UBERON:0001281

From FANTOM5_SSTAR

Jump to: navigation, search

Name:hepatic sinusoid
Namespace:FANTOM
Definition:"Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
Xrefs:
links:

EHDAA2:0000999
EHDAA:2199
EHDAA:3997
EHDAA:4003
EHDAA:6992
EHDAA:8084
EMAPA:17365
FMA:17543
MA:0000367
ncithesaurus:Hepatic_Sinusoid
SCTID:67435004
TAO:0005091
VHOG:0000708

ZFA:0005091
Synonyms: "hepatic sinusoids" RELATED []
"liver sinusoid" EXACT []
"liver sinusoidal blood vessel" EXACT [OBOL:automatic]
"sinusoid of liver" EXACT [OBOL:automatic]
"sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
"vas capillare sinusoideum" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003275
UBERON:FMA_17543-MA_0000367-ZFA_0005091
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0003909(sinusoid),UBERON:0005911(endo-epithelium),UBERON:0015796(liver blood vessel)
part_of:UBERON:0002107(liver),UBERON:0004647(liver lobule),UBERON:0006877(vasculature of liver)



Children

is a:FF:13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1),FF:13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2),FF:13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3),FF:13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1),FF:13599-146E8 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep2),FF:13600-146E9 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep3),FF:13601-146F1 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep1),FF:13602-146F2 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep2),FF:13603-146F3 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep3),FF:13604-146F4 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep1),FF:13605-146F5 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep2),FF:13606-146F6 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep3),FF:13607-146F7 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep1),FF:13608-146F8 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep2),FF:13609-146F9 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep3)
derives from:FF:0000076 (hepatic sinusoidal endothelial cell sample)
part of:FF:0000076 (hepatic sinusoidal endothelial cell sample),CL:1000398 (endothelial cell of hepatic sinusoid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001281 (hepatic sinusoid), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_6fce5d17c2d4fcdd0dfb645df56d5240-, p@chr15:32178407..32178408
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_6fce5d17c2d4fcdd0dfb645df56d5240p4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93942324..93942342, -
3.07e-86FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_6fce5d17c2d4fcdd0dfb645df56d5240+, p@chr11:115280630..115280662
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_6fce5d17c2d4fcdd0dfb645df56d5240p8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:28911901..28911906, -
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:21389022..21389032, +
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:30944451..30944485, +
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE2:Mm9::chr3:121593688..121593695,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:75375903..75375931, +
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:21389022..21389032, +
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_6fce5d17c2d4fcdd0dfb645df56d5240+, p@chr5:75375903..75375931
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_6fce5d17c2d4fcdd0dfb645df56d5240+, p@chr15:82207617..82207621
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114123814..114123821, -
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE2:Mm9::chr18:44793802..44793835,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_6fce5d17c2d4fcdd0dfb645df56d5240+, p@chr10:93819538..93819549
3.07e-86FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_6fce5d17c2d4fcdd0dfb645df56d5240p6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_6fce5d17c2d4fcdd0dfb645df56d5240+, p@chr4:57687477..57687488
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82209805..82209851, +
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:8928284..8928331, +

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0001281&oldid=3277225"