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UBERON:0001281

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Name:hepatic sinusoid
Namespace:FANTOM
Definition:"Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
Xrefs:
links:

EHDAA2:0000999
EHDAA:2199
EHDAA:3997
EHDAA:4003
EHDAA:6992
EHDAA:8084
EMAPA:17365
FMA:17543
MA:0000367
ncithesaurus:Hepatic_Sinusoid
SCTID:67435004
TAO:0005091
VHOG:0000708

ZFA:0005091
Synonyms: "hepatic sinusoids" RELATED []
"liver sinusoid" EXACT []
"liver sinusoidal blood vessel" EXACT [OBOL:automatic]
"sinusoid of liver" EXACT [OBOL:automatic]
"sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
"vas capillare sinusoideum" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003275
UBERON:FMA_17543-MA_0000367-ZFA_0005091
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003909(sinusoid),UBERON:0005911(endo-epithelium),UBERON:0015796(liver blood vessel)
part_of:UBERON:0002107(liver),UBERON:0004647(liver lobule),UBERON:0006877(vasculature of liver)



Children

is a:FF:13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1),FF:13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2),FF:13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3),FF:13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1),FF:13599-146E8 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep2),FF:13600-146E9 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep3),FF:13601-146F1 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep1),FF:13602-146F2 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep2),FF:13603-146F3 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep3),FF:13604-146F4 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep1),FF:13605-146F5 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep2),FF:13606-146F6 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep3),FF:13607-146F7 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep1),FF:13608-146F8 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep2),FF:13609-146F9 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep3)
derives from:FF:0000076 (hepatic sinusoidal endothelial cell sample)
part of:FF:0000076 (hepatic sinusoidal endothelial cell sample),CL:1000398 (endothelial cell of hepatic sinusoid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001281 (hepatic sinusoid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:137570295..137570315, +
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_6fce5d17c2d4fcdd0dfb645df56d5240p8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:52781901..52781904, +
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_6fce5d17c2d4fcdd0dfb645df56d5240p4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chrX:166418658..166418683, +
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93499468..93499494, -
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:68437375..68437378, +

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