Personal tools

UBERON:0001709

From FANTOM5_SSTAR

Jump to: navigation, search

Name:upper jaw region
Namespace:FANTOM
Definition:"The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator]
Xrefs:
links:

AAO:0000620
EHDAA2:0002118
EHDAA:8025
EMAPA:17924
FMA:54397
[ 200px-Gray189.png 200px-Gray189.png]
MA:0001908
ncithesaurus:Upper_Jaw
VHOG:0000454

XAO:0003087
Synonyms: "dorsal mandibular arch" RELATED []
"dorsal pharyngeal arch 1" RELATED INCONSISTENT []
"dorsal visceral arch 1" EXACT [ZFA:0001272]
"palatoquadrate arch" EXACT []
"upper pharyngeal jaw" EXACT [ZFA:0001272]
"upper pharyngeal jaws" RELATED []
Comments:AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head
Alt_id: UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0011595(jaw region)
part_of:UBERON:0004089(midface)



Children

part of:UBERON:0003277 (skeleton of upper jaw),UBERON:0003323 (mesenchyme of upper jaw),UBERON:0011597 (bone of upper jaw)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001709 (upper jaw region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_56d24e048da30aad5aad3a2c6274b733p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_56d24e048da30aad5aad3a2c6274b733p14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b6d4c00d19a7545146a24575d207e591p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b6d4c00d19a7545146a24575d207e591p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b6d4c00d19a7545146a24575d207e591p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b6d4c00d19a7545146a24575d207e591p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b6d4c00d19a7545146a24575d207e591p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b6d4c00d19a7545146a24575d207e591p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b6d4c00d19a7545146a24575d207e591p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b6d4c00d19a7545146a24575d207e591p@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_79d9f1ae677b83dffcd45b7462faf504p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_79d9f1ae677b83dffcd45b7462faf504p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_79d9f1ae677b83dffcd45b7462faf504p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_79d9f1ae677b83dffcd45b7462faf504p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_c5b5d309b73692a89e78db814f006248p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_c5b5d309b73692a89e78db814f006248p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_8965bd240707b6b4144c952bf1d39915p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_8965bd240707b6b4144c952bf1d39915p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_8965bd240707b6b4144c952bf1d39915p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_8965bd240707b6b4144c952bf1d39915p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_8965bd240707b6b4144c952bf1d39915p17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_8965bd240707b6b4144c952bf1d39915p9@C17orf67
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_f5c5a2f466aaf191b14eabe74b7df46ep@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_f5c5a2f466aaf191b14eabe74b7df46ep@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_43bbf23473c2c44452ed46aa5d06f924p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_43bbf23473c2c44452ed46aa5d06f924p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_43bbf23473c2c44452ed46aa5d06f924p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_43bbf23473c2c44452ed46aa5d06f924p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_43bbf23473c2c44452ed46aa5d06f924p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_43bbf23473c2c44452ed46aa5d06f924p1@AK123925
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_757e5c48832031fd1af1de02517f68a4p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_757e5c48832031fd1af1de02517f68a4p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_757e5c48832031fd1af1de02517f68a4p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_757e5c48832031fd1af1de02517f68a4p23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57354143..57354152, +
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_88f05b2e8abd57706953892bac954364p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_88f05b2e8abd57706953892bac954364p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_88f05b2e8abd57706953892bac954364p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_88f05b2e8abd57706953892bac954364p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_88f05b2e8abd57706953892bac954364p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_88f05b2e8abd57706953892bac954364p12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_f236ba74308db75366741e6b334dbb62p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_f236ba74308db75366741e6b334dbb62p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_f236ba74308db75366741e6b334dbb62p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_f236ba74308db75366741e6b334dbb62p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_c6132c0c10333183c54fac754c8e6e97p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_c6132c0c10333183c54fac754c8e6e97p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_c6132c0c10333183c54fac754c8e6e97p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_c6132c0c10333183c54fac754c8e6e97p@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_059bc0912565ba3c9a09493e9d95fbacp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_059bc0912565ba3c9a09493e9d95fbacp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_059bc0912565ba3c9a09493e9d95fbacp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_059bc0912565ba3c9a09493e9d95fbacp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_059bc0912565ba3c9a09493e9d95fbacp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_059bc0912565ba3c9a09493e9d95fbacp@chr10:15760985..15760992, -
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_506d9f536c91de562253f85e49b97380p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_506d9f536c91de562253f85e49b97380p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_004a1d9e554377c249015417525ce3ddp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_004a1d9e554377c249015417525ce3ddp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_3feeb0455aa6dc1467e24cec7ecd7464p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_3feeb0455aa6dc1467e24cec7ecd7464p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_3feeb0455aa6dc1467e24cec7ecd7464p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_3feeb0455aa6dc1467e24cec7ecd7464p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_0c090d183d4004944a22ee727e9fba1fp12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_0c090d183d4004944a22ee727e9fba1fp4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_0c090d183d4004944a22ee727e9fba1fp@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_0c090d183d4004944a22ee727e9fba1fp12@FBN2
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_0c090d183d4004944a22ee727e9fba1fp4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_0c090d183d4004944a22ee727e9fba1fp@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57353804..57353821, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_22cd17ee56b6a5eee0a4afb833e950ebp10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_22cd17ee56b6a5eee0a4afb833e950ebp7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_22cd17ee56b6a5eee0a4afb833e950ebp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_22cd17ee56b6a5eee0a4afb833e950ebp7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_dc1dbcb181d0fc5899c8f296086b6caap@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_dc1dbcb181d0fc5899c8f296086b6caap@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_bb5879f75c96d4291f8481edd7cab3d8p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_bb5879f75c96d4291f8481edd7cab3d8p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_bb5879f75c96d4291f8481edd7cab3d8p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_bb5879f75c96d4291f8481edd7cab3d8p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_bb5879f75c96d4291f8481edd7cab3d8p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_bb5879f75c96d4291f8481edd7cab3d8p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_780b8d7be3e84308a2cbbe4a169e1387p@chr13:36046127..36046134, +
4.2e-29FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_780b8d7be3e84308a2cbbe4a169e1387p@chr1:75602768..75602785, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Superior maxillary arch located on the anterior and lateral sides of the skull.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.