Personal tools

UBERON:0003277

From FANTOM5_SSTAR

Jump to: navigation, search

Name:skeleton of upper jaw
Namespace:FANTOM
Definition:"A subdivision of skeleton that is part of a upper jaw [Obol]." [OBOL:automatic]
Xrefs:
links:

AAO:0000622
EHDAA2:0002128
EHDAA:8041
EMAPA:17927

VHOG:0000429
Synonyms: "palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic]
"subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic]
"subdivision of skeleton of upper jaw" EXACT [OBOL:automatic]
"upper jaw skeleton" EXACT []
"upper jaw subdivision of skeleton" EXACT [OBOL:automatic]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0010912(subdivision of skeleton)
part_of:UBERON:0001708(jaw skeleton),UBERON:0001709(upper jaw region)



Children

part of:UBERON:0002244 (premaxilla),UBERON:0002397 (maxilla),UBERON:0011597 (bone of upper jaw),UBERON:0011628 (early premaxilla)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003277 (skeleton of upper jaw), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_cbaa1d13eafa29667da1c6e3cd154e5bp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_cbaa1d13eafa29667da1c6e3cd154e5bp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_a146be49c311215fa9c4dc6b81299cf4p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_a146be49c311215fa9c4dc6b81299cf4p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_a146be49c311215fa9c4dc6b81299cf4p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_a146be49c311215fa9c4dc6b81299cf4p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_a146be49c311215fa9c4dc6b81299cf4p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_a146be49c311215fa9c4dc6b81299cf4p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_a146be49c311215fa9c4dc6b81299cf4p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_a146be49c311215fa9c4dc6b81299cf4p13@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_fad06b614fd661003bb5f48e70cfcf19p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_fad06b614fd661003bb5f48e70cfcf19p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_fad06b614fd661003bb5f48e70cfcf19p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_fad06b614fd661003bb5f48e70cfcf19p14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_816518ab369e8f0c82e73d4e13e69900p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_816518ab369e8f0c82e73d4e13e69900p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_e1634a8e9f56bca52e9a6a67a8d943a9p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_e1634a8e9f56bca52e9a6a67a8d943a9p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_e1634a8e9f56bca52e9a6a67a8d943a9p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_e1634a8e9f56bca52e9a6a67a8d943a9+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_e1634a8e9f56bca52e9a6a67a8d943a9p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_e1634a8e9f56bca52e9a6a67a8d943a9p17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_115d6cd611275bc7697821905087d99dp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_115d6cd611275bc7697821905087d99dp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_6feac340b3bada795a202f5ae5b27233p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_6feac340b3bada795a202f5ae5b27233p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_6feac340b3bada795a202f5ae5b27233p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_6feac340b3bada795a202f5ae5b27233p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_6feac340b3bada795a202f5ae5b27233p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_6feac340b3bada795a202f5ae5b27233p7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_753bb7e85422957fedc64f6d7779ee85p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_753bb7e85422957fedc64f6d7779ee85p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_753bb7e85422957fedc64f6d7779ee85p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_753bb7e85422957fedc64f6d7779ee85p23@FLT1
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_92af1e3e53a4035cf3a869e1ab1907ca-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_bb3690e04f243e177559cc00b3c0a81fp12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_bb3690e04f243e177559cc00b3c0a81fp2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_bb3690e04f243e177559cc00b3c0a81fp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_bb3690e04f243e177559cc00b3c0a81fp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_bb3690e04f243e177559cc00b3c0a81fp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_bb3690e04f243e177559cc00b3c0a81fp12@FAM65C
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_372fea338743fca0b36b118d42f11f9ep@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_372fea338743fca0b36b118d42f11f9ep@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_372fea338743fca0b36b118d42f11f9ep@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_372fea338743fca0b36b118d42f11f9ep@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_9c609b69eb63f27d0d64bc35ff023c5ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_9c609b69eb63f27d0d64bc35ff023c5ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_9c609b69eb63f27d0d64bc35ff023c5ap@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_9c609b69eb63f27d0d64bc35ff023c5ap@chr9:125165007..125165016, +
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_6f096a2cd15b6d3e0e853b5874bee526p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_6f096a2cd15b6d3e0e853b5874bee526p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_6f096a2cd15b6d3e0e853b5874bee526p4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_6f096a2cd15b6d3e0e853b5874bee526p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_6f096a2cd15b6d3e0e853b5874bee526p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_6f096a2cd15b6d3e0e853b5874bee526p@chr10:15760985..15760992, -
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_f7a4ed61d5105750030a9031b4a96570p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_f7a4ed61d5105750030a9031b4a96570p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_3e243cd6acd85a53e6cfa7ef37e2ac8cp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_3e243cd6acd85a53e6cfa7ef37e2ac8cp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_0cb8ee18c512da9cd8f6ce8d11c6cb8bp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_0cb8ee18c512da9cd8f6ce8d11c6cb8bp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_0cb8ee18c512da9cd8f6ce8d11c6cb8bp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_0cb8ee18c512da9cd8f6ce8d11c6cb8b-, p@chr8:57353676..57353688
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_a2fc91546f2f5f4b707db49fe969b38e-, p@chr5:19721484..19721507
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_a2fc91546f2f5f4b707db49fe969b38ep4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_a2fc91546f2f5f4b707db49fe969b38ep12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_a2fc91546f2f5f4b707db49fe969b38ep@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_a2fc91546f2f5f4b707db49fe969b38ep12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_a2fc91546f2f5f4b707db49fe969b38ep4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_f52b53bb05588d3391c7536156be6819-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_f52b53bb05588d3391c7536156be6819p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_f52b53bb05588d3391c7536156be6819p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_f52b53bb05588d3391c7536156be6819p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_f52b53bb05588d3391c7536156be6819p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_f52b53bb05588d3391c7536156be6819+, p@chr8:57354360..57354367
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_1274431db3a485f4d6cfc0958f2dd382p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_1274431db3a485f4d6cfc0958f2dd382p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_1274431db3a485f4d6cfc0958f2dd382p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_1274431db3a485f4d6cfc0958f2dd382p10@ITGA8
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_804d0ef9b943d45108ee34b71ae56b4ap@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_804d0ef9b943d45108ee34b71ae56b4ap@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_804d0ef9b943d45108ee34b71ae56b4ap@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_804d0ef9b943d45108ee34b71ae56b4ap@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_804d0ef9b943d45108ee34b71ae56b4ap@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_804d0ef9b943d45108ee34b71ae56b4ap@chr17:79071218..79071221, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_cdade3261ccba8cdb0eb73ca59ec21c6p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_cdade3261ccba8cdb0eb73ca59ec21c6p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_8bddcb17192a487eac36b57a185d7755p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_8bddcb17192a487eac36b57a185d7755p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_8bddcb17192a487eac36b57a185d7755p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_8bddcb17192a487eac36b57a185d7755-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_8bddcb17192a487eac36b57a185d7755p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_8bddcb17192a487eac36b57a185d7755p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_f140f42ae873d139639852eb5c0ec3b3p@chr13:36046127..36046134, +
4.2e-29FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_f140f42ae873d139639852eb5c0ec3b3+, p@chr1:75602768..75602785

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0003277&oldid=3277539"