UBERON:0001905
From FANTOM5_SSTAR
Name: | pineal body | ||
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Namespace: | FANTOM | ||
Definition: | "The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_gland] | ||
Xrefs: |
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Synonyms: |
"corpus pineale" EXACT [] "epiphysis" RELATED [ZFA:0000019] "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri] "glandula pinealis" EXACT [FMA:TA] "glandula pinealis" EXACT [FMA:62033, FMA:TA] "pineal gland" EXACT [FMA:62033] "pineal organ" EXACT [ZFA:0000019] | ||
Comments: | AO notes: part of midbrain in HOG, but this is inconsistent with ABA. | ||
Alt_id: | UBERON:FMA_62033-MA_0000175-XAO_0000160 | ||
Subset: |
organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002757(regional part of epithalamus),UBERON:0003296(gland of diencephalon),UBERON:0010134(secretory circumventricular organ) |
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part_of: | UBERON:0015238(pineal complex) |
Children
derives from: | FF:0010160 (human pineal gland - adult sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001905 (pineal body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
3.29e-195 | FFCP PHASE1:Hg19::chr6:33087873..33087886,-#_842633804e145228aa5bd41c0ffb3985 | p@chr6:33087873..33087886, - |
3.29e-195 | FFCP PHASE1:Hg19::chr2:17064630..17064651,+#_842633804e145228aa5bd41c0ffb3985 | p@chr2:17064630..17064651, + |
3.29e-195 | FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_842633804e145228aa5bd41c0ffb3985 | p9@PRR16 |
3.29e-195 | FFCP PHASE2:Hg19::chr8:135473748..135473753,-#_842633804e145228aa5bd41c0ffb3985 | p@chr8:135473748..135473753, - |
3.29e-195 | FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_842633804e145228aa5bd41c0ffb3985 | p@chr16:1210506..1210513, - |
3.29e-195 | FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_842633804e145228aa5bd41c0ffb3985 | p3@NEUROG1 |
3.29e-195 | FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_842633804e145228aa5bd41c0ffb3985 | p@chr1:99860786..99860791, - |
3.29e-195 | FFCP PHASE1:Hg19::chr8:135504337..135504342,-#_842633804e145228aa5bd41c0ffb3985 | p@chr8:135504337..135504342, - |
3.29e-195 | FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_842633804e145228aa5bd41c0ffb3985 | p2@ENST00000414895 |
3.29e-195 | FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_842633804e145228aa5bd41c0ffb3985 | p@chr4:1188439..1188454, - |
3.29e-195 | FFCP PHASE1:Hg19::chr2:108616342..108616384,+#_842633804e145228aa5bd41c0ffb3985 | p@chr2:108616342..108616384, + |
3.29e-195 | FFCP PHASE2:Hg19::chr12:49621658..49621666,+#_842633804e145228aa5bd41c0ffb3985 | p21@TUBA1C |
3.29e-195 | FFCP PHASE2:Hg19::chr11:18063707..18063720,-#_842633804e145228aa5bd41c0ffb3985 | p@chr11:18063707..18063720, - |
3.29e-195 | FFCP PHASE1:Hg19::chr13:52650541..52650548,-#_842633804e145228aa5bd41c0ffb3985 | p@chr13:52650541..52650548, - |
3.29e-195 | FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_842633804e145228aa5bd41c0ffb3985 | p35@DMD |
3.29e-195 | FFCP PHASE2:Hg19::chr10:18580269..18580290,+#_842633804e145228aa5bd41c0ffb3985 | p@chr10:18580269..18580290, + |
3.29e-195 | FFCP PHASE1:Hg19::chr8:87751931..87751947,-#_842633804e145228aa5bd41c0ffb3985 | p@chr8:87751931..87751947, - |
3.29e-195 | FFCP PHASE1:Hg19::chr7:120969099..120969104,+#_842633804e145228aa5bd41c0ffb3985 | p3@WNT16 |
3.29e-195 | FFCP PHASE2:Hg19::chr13:52650541..52650548,-#_842633804e145228aa5bd41c0ffb3985 | p@chr13:52650541..52650548, - |
3.29e-195 | FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_842633804e145228aa5bd41c0ffb3985 | p@chr9:92310419..92310432, + |
3.29e-195 | FFCP PHASE2:Hg19::chr8:99033417..99033423,+#_842633804e145228aa5bd41c0ffb3985 | p17@MATN2 |
3.29e-195 | FFCP PHASE2:Hg19::chr18:56962131..56962138,-#_842633804e145228aa5bd41c0ffb3985 | p@chr18:56962131..56962138, - |
3.29e-195 | FFCP PHASE1:Hg19::chr11:18053180..18053192,-#_842633804e145228aa5bd41c0ffb3985 | p@chr11:18053180..18053192, - |
3.29e-195 | FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_842633804e145228aa5bd41c0ffb3985 | p@chr13:56628524..56628547, - |
3.29e-195 | FFCP PHASE2:Hg19::chr12:56582028..56582062,+#_842633804e145228aa5bd41c0ffb3985 | p@chr12:56582028..56582062, + |
3.29e-195 | FFCP PHASE1:Hg19::chr17:74463567..74463574,+#_842633804e145228aa5bd41c0ffb3985 | p4@AANAT |
3.29e-195 | FFCP PHASE2:Hg19::chr16:18066319..18066337,-#_842633804e145228aa5bd41c0ffb3985 | p@chr16:18066319..18066337, - |
3.29e-195 | FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_842633804e145228aa5bd41c0ffb3985 | p@chr10:80984180..80984190, - |
3.29e-195 | FFCP PHASE2:Hg19::chr5:136699666..136699696,-#_842633804e145228aa5bd41c0ffb3985 | p@chr5:136699666..136699696, - |
3.29e-195 | FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_842633804e145228aa5bd41c0ffb3985 | p@chr3:54952420..54952425, - |
3.29e-195 | FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_842633804e145228aa5bd41c0ffb3985 | p@chr6:33087873..33087886, - |
3.29e-195 | FFCP PHASE1:Hg19::chr1:99798419..99798422,-#_842633804e145228aa5bd41c0ffb3985 | p@chr1:99798419..99798422, - |
3.29e-195 | FFCP PHASE2:Hg19::chr2:17064630..17064651,+#_842633804e145228aa5bd41c0ffb3985 | p@chr2:17064630..17064651, + |
3.29e-195 | FFCP PHASE1:Hg19::chr12:55422293..55422300,+#_842633804e145228aa5bd41c0ffb3985 | p@chr12:55422293..55422300, + |
3.29e-195 | FFCP PHASE1:Hg19::chr17:55484129..55484139,+#_842633804e145228aa5bd41c0ffb3985 | p@chr17:55484129..55484139, + |
3.29e-195 | FFCP PHASE1:Hg19::chr3:128170725..128170735,+#_842633804e145228aa5bd41c0ffb3985 | p@chr3:128170725..128170735, + |
3.29e-195 | FFCP PHASE2:Hg19::chr12:99734965..99734976,-#_842633804e145228aa5bd41c0ffb3985 | p@chr12:99734965..99734976, - |
3.29e-195 | FFCP PHASE1:Hg19::chr9:37692930..37692936,+#_842633804e145228aa5bd41c0ffb3985 | p@chr9:37692930..37692936, + |
3.29e-195 | FFCP PHASE1:Hg19::chr8:135515989..135515991,+#_842633804e145228aa5bd41c0ffb3985 | p@chr8:135515989..135515991, + |
3.29e-195 | FFCP PHASE2:Hg19::chr11:18039672..18039678,-#_842633804e145228aa5bd41c0ffb3985 | p@chr11:18039672..18039678, - |
3.29e-195 | FFCP PHASE1:Hg19::chr16:18066399..18066411,-#_842633804e145228aa5bd41c0ffb3985 | p@chr16:18066399..18066411, - |
3.29e-195 | FFCP PHASE1:Hg19::chr5:119868809..119868839,+#_842633804e145228aa5bd41c0ffb3985 | p@chr5:119868809..119868839, + |
3.29e-195 | FFCP PHASE2:Hg19::chr2:108616342..108616384,+#_842633804e145228aa5bd41c0ffb3985 | p@chr2:108616342..108616384, + |
3.29e-195 | FFCP PHASE1:Hg19::chr8:99033409..99033415,+#_842633804e145228aa5bd41c0ffb3985 | p16@MATN2 |
3.29e-195 | FFCP PHASE2:Hg19::chr1:45782001..45782009,+#_842633804e145228aa5bd41c0ffb3985 | p@chr1:45782001..45782009, + |
3.29e-195 | FFCP PHASE1:Hg19::chr13:21399081..21399087,+#_842633804e145228aa5bd41c0ffb3985 | p@chr13:21399081..21399087, + |
3.29e-195 | FFCP PHASE1:Hg19::chr12:81859007..81859036,+#_842633804e145228aa5bd41c0ffb3985 | p@chr12:81859007..81859036, + |
3.29e-195 | FFCP PHASE1:Hg19::chr5:136699666..136699696,-#_842633804e145228aa5bd41c0ffb3985 | p@chr5:136699666..136699696, - |
3.29e-195 | FFCP PHASE1:Hg19::chr2:44903714..44903719,+#_842633804e145228aa5bd41c0ffb3985 | p8@CAMKMT |
3.29e-195 | FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_842633804e145228aa5bd41c0ffb3985 | p@chr16:17930871..17930877, - |
3.29e-195 | FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_842633804e145228aa5bd41c0ffb3985 | p3@WNT16 |
3.29e-195 | FFCP PHASE1:Hg19::chr3:192894664..192894677,-#_842633804e145228aa5bd41c0ffb3985 | p1@ENST00000414895 |
3.29e-195 | FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_842633804e145228aa5bd41c0ffb3985 | p@chr13:56628548..56628553, - |
3.29e-195 | FFCP PHASE1:Hg19::chr1:204620238..204620253,+#_842633804e145228aa5bd41c0ffb3985 | p@chr1:204620238..204620253, + |
3.29e-195 | FFCP PHASE1:Hg19::chr12:49621658..49621666,+#_842633804e145228aa5bd41c0ffb3985 | p21@TUBA1C |
3.29e-195 | FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_842633804e145228aa5bd41c0ffb3985 | p@chr11:18067951..18067954, - |
3.29e-195 | FFCP PHASE2:Hg19::chr8:135504405..135504410,-#_842633804e145228aa5bd41c0ffb3985 | p@chr8:135504405..135504410, - |
3.29e-195 | FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_842633804e145228aa5bd41c0ffb3985 | p@chr18:56963093..56963105, - |
3.29e-195 | FFCP PHASE1:Hg19::chr16:1210506..1210513,-#_842633804e145228aa5bd41c0ffb3985 | p@chr16:1210506..1210513, - |
3.29e-195 | FFCP PHASE2:Hg19::chr11:18042584..18042593,-#_842633804e145228aa5bd41c0ffb3985 | p@chr11:18042584..18042593, - |
3.29e-195 | FFCP PHASE2:Hg19::chr12:55422565..55422604,+#_842633804e145228aa5bd41c0ffb3985 | p@chr12:55422565..55422604, + |
3.29e-195 | FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_842633804e145228aa5bd41c0ffb3985 | p@chr12:56582028..56582062, + |
3.29e-195 | FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_842633804e145228aa5bd41c0ffb3985 | p@chr1:57914395..57914398, + |
3.29e-195 | FFCP PHASE2:Hg19::chr8:87755845..87755852,-#_842633804e145228aa5bd41c0ffb3985 | p6@CNGB3 |
3.29e-195 | FFCP PHASE2:Hg19::chr3:128170725..128170735,+#_842633804e145228aa5bd41c0ffb3985 | p@chr3:128170725..128170735, + |
3.29e-195 | FFCP PHASE1:Hg19::chr8:135522475..135522486,-#_842633804e145228aa5bd41c0ffb3985 | p16@ZFAT |
3.29e-195 | FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_842633804e145228aa5bd41c0ffb3985 | p4@AANAT |
3.29e-195 | FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_842633804e145228aa5bd41c0ffb3985 | p9@GNB3 |
3.29e-195 | FFCP PHASE1:Hg19::chr3:54952432..54952459,-#_842633804e145228aa5bd41c0ffb3985 | p@chr3:54952432..54952459, - |
3.29e-195 | FFCP PHASE2:Hg19::chr11:18041206..18041211,-#_842633804e145228aa5bd41c0ffb3985 | p@chr11:18041206..18041211, - |
3.29e-195 | FFCP PHASE2:Hg19::chr1:13820103..13820109,+#_842633804e145228aa5bd41c0ffb3985 | p@chr1:13820103..13820109, + |
3.29e-195 | FFCP PHASE2:Hg19::chr16:50898038..50898042,-#_842633804e145228aa5bd41c0ffb3985 | p@chr16:50898038..50898042, - |
3.29e-195 | FFCP PHASE1:Hg19::chr2:17065916..17065929,+#_842633804e145228aa5bd41c0ffb3985 | p@chr2:17065916..17065929, + |
3.29e-195 | FFCP PHASE2:Hg19::chr5:119868809..119868839,+#_842633804e145228aa5bd41c0ffb3985 | p@chr5:119868809..119868839, + |
3.29e-195 | FFCP PHASE1:Hg19::chr8:135473063..135473075,-#_842633804e145228aa5bd41c0ffb3985 | p@chr8:135473063..135473075, - |
3.29e-195 | FFCP PHASE2:Hg19::chr9:25264978..25265001,+#_842633804e145228aa5bd41c0ffb3985 | p@chr9:25264978..25265001, + |
3.29e-195 | FFCP PHASE1:Hg19::chr7:9178561..9178568,-#_842633804e145228aa5bd41c0ffb3985 | p@chr7:9178561..9178568, - |
3.29e-195 | FFCP PHASE1:Hg19::chr5:135732675..135732680,-#_842633804e145228aa5bd41c0ffb3985 | p3@ENST00000514282 |
3.29e-195 | FFCP PHASE2:Hg19::chr12:60826120..60826127,+#_842633804e145228aa5bd41c0ffb3985 | p@chr12:60826120..60826127, + |
3.29e-195 | FFCP PHASE2:Hg19::chr1:99860883..99860921,-#_842633804e145228aa5bd41c0ffb3985 | p@chr1:99860883..99860921, - |
3.29e-195 | FFCP PHASE1:Hg19::chr8:135504353..135504365,-#_842633804e145228aa5bd41c0ffb3985 | p@chr8:135504353..135504365, - |
3.29e-195 | FFCP PHASE1:Hg19::chr2:48705144..48705150,+#_842633804e145228aa5bd41c0ffb3985 | p@chr2:48705144..48705150, + |
3.29e-195 | FFCP PHASE2:Hg19::chr12:121088121..121088131,+#_842633804e145228aa5bd41c0ffb3985 | p11@CABP1 |
3.29e-195 | FFCP PHASE2:Hg19::chr2:44903714..44903719,+#_842633804e145228aa5bd41c0ffb3985 | p8@CAMKMT |
3.29e-195 | FFCP PHASE1:Hg19::chr9:137539895..137539904,+#_842633804e145228aa5bd41c0ffb3985 | p@chr9:137539895..137539904, + |
3.29e-195 | FFCP PHASE1:Hg19::chr16:18066319..18066337,-#_842633804e145228aa5bd41c0ffb3985 | p@chr16:18066319..18066337, - |
3.29e-195 | FFCP PHASE2:Hg19::chr17:55484129..55484139,+#_842633804e145228aa5bd41c0ffb3985 | p@chr17:55484129..55484139, + |
3.29e-195 | FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_842633804e145228aa5bd41c0ffb3985 | p@chr11:18041194..18041197, - |
3.29e-195 | FFCP PHASE2:Hg19::chr3:192894664..192894677,-#_842633804e145228aa5bd41c0ffb3985 | p1@ENST00000414895 |
3.29e-195 | FFCP PHASE2:Hg19::chr14:57197193..57197194,-#_842633804e145228aa5bd41c0ffb3985 | p1@ENST00000554597 |
3.29e-195 | FFCP PHASE2:Hg19::chr8:135520309..135520324,-#_842633804e145228aa5bd41c0ffb3985 | p@chr8:135520309..135520324, - |
3.29e-195 | FFCP PHASE1:Hg19::chr8:87755821..87755822,-#_842633804e145228aa5bd41c0ffb3985 | p10@CNGB3 |
3.29e-195 | FFCP PHASE1:Hg19::chr5:7338484..7338504,-#_842633804e145228aa5bd41c0ffb3985 | p@chr5:7338484..7338504, - |
3.29e-195 | FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_842633804e145228aa5bd41c0ffb3985 | p@chr12:99734965..99734976, - |
3.29e-195 | FFCP PHASE1:Hg19::chr5:119799539..119799543,+#_842633804e145228aa5bd41c0ffb3985 | p13@PRR16 |
3.29e-195 | FFCP PHASE2:Hg19::chr8:135472861..135472868,-#_842633804e145228aa5bd41c0ffb3985 | p@chr8:135472861..135472868, - |
3.29e-195 | FFCP PHASE2:Hg19::chr18:56963093..56963105,-#_842633804e145228aa5bd41c0ffb3985 | p@chr18:56963093..56963105, - |
3.29e-195 | FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_842633804e145228aa5bd41c0ffb3985 | p@chr11:18063669..18063678, - |
3.29e-195 | FFCP PHASE1:Hg19::chr13:56628548..56628553,-#_842633804e145228aa5bd41c0ffb3985 | p@chr13:56628548..56628553, - |
3.29e-195 | FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_842633804e145228aa5bd41c0ffb3985 | p7@TULP4 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.