Personal tools

UBERON:0002079

From FANTOM5_SSTAR

Jump to: navigation, search

Name:left cardiac atrium
Namespace:FANTOM
Definition:"Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" [FMA:FMA, Wikipedia:Left_atrium]
Xrefs:
links:

AAO:0010247
BTO:0001702
EHDAA2:0000275
EMAPA:17315
FMA:7097
galen:LeftAtrium
[1]
[ 200px-Diagram_of_the_human_heart_%28cropped%29.svg.png 200px-Diagram_of_the_human_heart_%28cropped%29.svg.png]
MA:0000074
ncithesaurus:Left_Atrium
OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw
OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
SCTID:244387002
VHOG:0000369

XAO:0003191
Synonyms: "atrium sinistrum" RELATED LATIN [Wikipedia:Left_atrium]
"cardiac left atrium" EXACT []
"heart left atrium" EXACT []
"left atrium of heart" EXACT []
"left cardiac atrium" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7097-MA_0000074
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0002081(cardiac atrium),UBERON:0015212(lateral structure)



Children

derives from:FF:0010079 (human left atrium - adult sample)
part of:UBERON:0005966 (outflow part of left atrium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002079 (left cardiac atrium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:79385898..79385905,-#_60a5f92478c974c50dd349931d83ea10p@chr17:79385898..79385905, -
5.42e-195FFCP PHASE1:Hg19::chr1:11907474..11907481,-#_60a5f92478c974c50dd349931d83ea10p10@NPPA
5.42e-195FFCP PHASE1:Hg19::chr17:79385898..79385905,-#_60a5f92478c974c50dd349931d83ea10p@chr17:79385898..79385905, -
5.42e-195FFCP PHASE2:Hg19::chr1:11907474..11907481,-#_60a5f92478c974c50dd349931d83ea10p10@NPPA
5.42e-195FFCP PHASE1:Hg19::chr1:43676416..43676417,-#_60a5f92478c974c50dd349931d83ea10p@chr1:43676416..43676417, -
5.42e-195FFCP PHASE2:Hg19::chr1:43676416..43676417,-#_60a5f92478c974c50dd349931d83ea10p@chr1:43676416..43676417, -
9.37e-99FFCP PHASE2:Hg19::chr1:11907415..11907418,-#_00f4b8a07bd411992f79f399ec59753bp15@NPPA
9.37e-99FFCP PHASE2:Hg19::chr15:26640282..26640290,+#_00f4b8a07bd411992f79f399ec59753bp5@ENST00000451579
9.37e-99FFCP PHASE2:Hg19::chr12:94730118..94730123,-#_00f4b8a07bd411992f79f399ec59753bp13@CCDC41
9.37e-99FFCP PHASE1:Hg19::chr1:11907318..11907327,-#_00f4b8a07bd411992f79f399ec59753bp7@NPPA
9.37e-99FFCP PHASE1:Hg19::chr1:109849679..109849688,-#_00f4b8a07bd411992f79f399ec59753bp3@MYBPHL
9.37e-99FFCP PHASE2:Hg19::chr1:11907440..11907450,+#_00f4b8a07bd411992f79f399ec59753bp@chr1:11907440..11907450, +
9.37e-99FFCP PHASE1:Hg19::chr12:94730118..94730123,-#_00f4b8a07bd411992f79f399ec59753bp13@CCDC41
9.37e-99FFCP PHASE1:Hg19::chr4:8321842..8321846,+#_00f4b8a07bd411992f79f399ec59753bp5@ENST00000509453
9.37e-99FFCP PHASE2:Hg19::chr1:11907318..11907327,-#_00f4b8a07bd411992f79f399ec59753bp7@NPPA
9.37e-99FFCP PHASE2:Hg19::chr12:70004523..70004545,-#_00f4b8a07bd411992f79f399ec59753bp3@LRRC10
9.37e-99FFCP PHASE1:Hg19::chr12:70004523..70004545,-#_00f4b8a07bd411992f79f399ec59753bp3@LRRC10
9.37e-99FFCP PHASE1:Hg19::chr1:11907408..11907415,+#_00f4b8a07bd411992f79f399ec59753bp@chr1:11907408..11907415, +
9.37e-99FFCP PHASE2:Hg19::chr4:8321842..8321846,+#_00f4b8a07bd411992f79f399ec59753bp5@ENST00000509453
9.37e-99FFCP PHASE1:Hg19::chr15:26640258..26640266,+#_00f4b8a07bd411992f79f399ec59753bp4@ENST00000451579
9.37e-99FFCP PHASE1:Hg19::chr1:11906044..11906050,-#_00f4b8a07bd411992f79f399ec59753bp@chr1:11906044..11906050, -
9.37e-99FFCP PHASE1:Hg19::chr1:11907415..11907418,-#_00f4b8a07bd411992f79f399ec59753bp15@NPPA
9.37e-99FFCP PHASE2:Hg19::chr1:109849679..109849688,-#_00f4b8a07bd411992f79f399ec59753bp3@MYBPHL
9.37e-99FFCP PHASE2:Hg19::chr1:11907408..11907415,+#_00f4b8a07bd411992f79f399ec59753bp@chr1:11907408..11907415, +
9.37e-99FFCP PHASE2:Hg19::chr15:26640258..26640266,+#_00f4b8a07bd411992f79f399ec59753bp4@ENST00000451579
9.37e-99FFCP PHASE1:Hg19::chr15:26640282..26640290,+#_00f4b8a07bd411992f79f399ec59753bp5@ENST00000451579
9.37e-99FFCP PHASE2:Hg19::chr1:11906044..11906050,-#_00f4b8a07bd411992f79f399ec59753bp@chr1:11906044..11906050, -
9.37e-99FFCP PHASE1:Hg19::chr1:11907440..11907450,+#_00f4b8a07bd411992f79f399ec59753bp@chr1:11907440..11907450, +
2.55e-98FFCP PHASE1:Hg19::chr11:45274072..45274078,-#_15c146d05bb27c44126323d538ac36d7p@chr11:45274072..45274078, -
2.55e-98FFCP PHASE2:Hg19::chr11:45274102..45274110,-#_15c146d05bb27c44126323d538ac36d7p@chr11:45274102..45274110, -
2.55e-98FFCP PHASE2:Hg19::chr1:207996071..207996074,-#_15c146d05bb27c44126323d538ac36d7p5@C1orf132
2.55e-98FFCP PHASE1:Hg19::chr8:142431453..142431493,+#_15c146d05bb27c44126323d538ac36d7p@chr8:142431453..142431493, +
2.55e-98FFCP PHASE1:Hg19::chr14:23862118..23862122,-#_15c146d05bb27c44126323d538ac36d7p18@MYH6
2.55e-98FFCP PHASE2:Hg19::chr18:28807557..28807562,-#_15c146d05bb27c44126323d538ac36d7p@chr18:28807557..28807562, -
2.55e-98FFCP PHASE1:Hg19::chr11:45274102..45274110,-#_15c146d05bb27c44126323d538ac36d7p@chr11:45274102..45274110, -
2.55e-98FFCP PHASE2:Hg19::chr2:50059270..50059276,-#_15c146d05bb27c44126323d538ac36d7p@chr2:50059270..50059276, -
2.55e-98FFCP PHASE1:Hg19::chr18:28807557..28807562,-#_15c146d05bb27c44126323d538ac36d7p@chr18:28807557..28807562, -
2.55e-98FFCP PHASE2:Hg19::chr6:138423239..138423250,-#_15c146d05bb27c44126323d538ac36d7p@chr6:138423239..138423250, -
2.55e-98FFCP PHASE1:Hg19::chr1:207996071..207996074,-#_15c146d05bb27c44126323d538ac36d7p5@C1orf132
2.55e-98FFCP PHASE1:Hg19::chr6:138423239..138423250,-#_15c146d05bb27c44126323d538ac36d7p@chr6:138423239..138423250, -
2.55e-98FFCP PHASE1:Hg19::chr2:50059270..50059276,-#_15c146d05bb27c44126323d538ac36d7p@chr2:50059270..50059276, -
2.55e-98FFCP PHASE2:Hg19::chr8:142431453..142431493,+#_15c146d05bb27c44126323d538ac36d7p@chr8:142431453..142431493, +
2.55e-98FFCP PHASE2:Hg19::chr14:23862118..23862122,-#_15c146d05bb27c44126323d538ac36d7p18@MYH6
2.55e-98FFCP PHASE2:Hg19::chr11:45274072..45274078,-#_15c146d05bb27c44126323d538ac36d7p@chr11:45274072..45274078, -
1.23e-66FFCP PHASE1:Hg19::chr14:104315251..104315260,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:104315251..104315260, -
1.23e-66FFCP PHASE2:Hg19::chr15:44172096..44172101,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr15:44172096..44172101, -
1.23e-66FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr1:11905799..11905806, -
1.23e-66FFCP PHASE2:Hg19::chr14:23863078..23863082,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:23863078..23863082, +
1.23e-66FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_7cd48367c3aa61777f0269d3779ff7b1p9@NPPA
1.23e-66FFCP PHASE2:Hg19::chr18:21906552..21906584,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr18:21906552..21906584, +
1.23e-66FFCP PHASE2:Hg19::chr4:65366184..65366190,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr4:65366184..65366190, -
1.23e-66FFCP PHASE1:Hg19::chr15:26640223..26640233,+#_7cd48367c3aa61777f0269d3779ff7b1p2@ENST00000451579
1.23e-66FFCP PHASE1:Hg19::chr1:11905915..11905921,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr1:11905915..11905921, -
1.23e-66FFCP PHASE2:Hg19::chr7:145378479..145378484,-#_7cd48367c3aa61777f0269d3779ff7b1p1@ENST00000422084
1.23e-66FFCP PHASE1:Hg19::chr5:172671810..172671816,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr5:172671810..172671816, -
1.23e-66FFCP PHASE1:Hg19::chr1:11907395..11907410,-#_7cd48367c3aa61777f0269d3779ff7b1p4@NPPA
1.23e-66FFCP PHASE1:Hg19::chr14:23863067..23863074,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:23863067..23863074, +
1.23e-66FFCP PHASE2:Hg19::chr15:26640223..26640233,+#_7cd48367c3aa61777f0269d3779ff7b1p2@ENST00000451579
1.23e-66FFCP PHASE1:Hg19::chr15:77964143..77964150,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr15:77964143..77964150, -
1.23e-66FFCP PHASE1:Hg19::chr12:114886422..114886429,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr12:114886422..114886429, -
1.23e-66FFCP PHASE2:Hg19::chr12:114886422..114886429,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr12:114886422..114886429, -
1.23e-66FFCP PHASE1:Hg19::chr2:69098566..69098571,-#_7cd48367c3aa61777f0269d3779ff7b1p3@BMP10
1.23e-66FFCP PHASE1:Hg19::chr4:65366184..65366190,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr4:65366184..65366190, -
1.23e-66FFCP PHASE1:Hg19::chr18:21906552..21906584,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr18:21906552..21906584, +
1.23e-66FFCP PHASE2:Hg19::chr1:11905915..11905921,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr1:11905915..11905921, -
1.23e-66FFCP PHASE1:Hg19::chr14:23863078..23863082,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:23863078..23863082, +
1.23e-66FFCP PHASE2:Hg19::chr12:70004575..70004590,-#_7cd48367c3aa61777f0269d3779ff7b1p4@LRRC10
1.23e-66FFCP PHASE1:Hg19::chr15:44172096..44172101,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr15:44172096..44172101, -
1.23e-66FFCP PHASE2:Hg19::chr1:11907395..11907410,-#_7cd48367c3aa61777f0269d3779ff7b1p4@NPPA
1.23e-66FFCP PHASE2:Hg19::chr14:104315251..104315260,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:104315251..104315260, -
1.23e-66FFCP PHASE2:Hg19::chr5:172671810..172671816,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr5:172671810..172671816, -
1.23e-66FFCP PHASE1:Hg19::chr12:70004575..70004590,-#_7cd48367c3aa61777f0269d3779ff7b1p4@LRRC10
1.23e-66FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr1:11905799..11905806, -
1.23e-66FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_7cd48367c3aa61777f0269d3779ff7b1p9@NPPA
1.23e-66FFCP PHASE2:Hg19::chr14:23863067..23863074,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:23863067..23863074, +
1.23e-66FFCP PHASE1:Hg19::chr7:145378479..145378484,-#_7cd48367c3aa61777f0269d3779ff7b1p1@ENST00000422084
1.23e-66FFCP PHASE2:Hg19::chr2:69098566..69098571,-#_7cd48367c3aa61777f0269d3779ff7b1p3@BMP10
1.23e-66FFCP PHASE2:Hg19::chr15:77964143..77964150,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr15:77964143..77964150, -
2.39e-66FFCP PHASE1:Hg19::chr12:117491808..117491811,-#_442689cc6837e7b894f8d67175d9ea04p6@TESC
2.39e-66FFCP PHASE1:Hg19::chr2:163978183..163978189,+#_442689cc6837e7b894f8d67175d9ea04p@chr2:163978183..163978189, +
2.39e-66FFCP PHASE2:Hg19::chr6:3912296..3912301,-#_442689cc6837e7b894f8d67175d9ea04p4@BX647262
2.39e-66FFCP PHASE2:Hg19::chr10:97182338..97182349,-#_442689cc6837e7b894f8d67175d9ea04p@chr10:97182338..97182349, -
2.39e-66FFCP PHASE2:Hg19::chr1:78383264..78383274,+#_442689cc6837e7b894f8d67175d9ea04p31@NEXN
2.39e-66FFCP PHASE2:Hg19::chr3:119379472..119379475,-#_442689cc6837e7b894f8d67175d9ea04p6@POPDC2
2.39e-66FFCP PHASE2:Hg19::chr11:19231405..19231414,+#_442689cc6837e7b894f8d67175d9ea04p@chr11:19231405..19231414, +
2.39e-66FFCP PHASE1:Hg19::chr15:99383378..99383380,-#_442689cc6837e7b894f8d67175d9ea04p@chr15:99383378..99383380, -
2.39e-66FFCP PHASE2:Hg19::chr15:99383378..99383380,-#_442689cc6837e7b894f8d67175d9ea04p@chr15:99383378..99383380, -
2.39e-66FFCP PHASE1:Hg19::chr1:78383264..78383274,+#_442689cc6837e7b894f8d67175d9ea04p31@NEXN
2.39e-66FFCP PHASE1:Hg19::chr6:3912296..3912301,-#_442689cc6837e7b894f8d67175d9ea04p4@BX647262
2.39e-66FFCP PHASE2:Hg19::chr5:160729887..160729898,+#_442689cc6837e7b894f8d67175d9ea04p@chr5:160729887..160729898, +
2.39e-66FFCP PHASE2:Hg19::chr12:117491808..117491811,-#_442689cc6837e7b894f8d67175d9ea04p6@TESC
2.39e-66FFCP PHASE1:Hg19::chr3:119379472..119379475,-#_442689cc6837e7b894f8d67175d9ea04p6@POPDC2
2.39e-66FFCP PHASE2:Hg19::chr12:3157390..3157430,+#_442689cc6837e7b894f8d67175d9ea04p@chr12:3157390..3157430, +
2.39e-66FFCP PHASE1:Hg19::chr12:114841717..114841726,-#_442689cc6837e7b894f8d67175d9ea04p15@TBX5
2.39e-66FFCP PHASE2:Hg19::chr12:114841717..114841726,-#_442689cc6837e7b894f8d67175d9ea04p15@TBX5
2.39e-66FFCP PHASE1:Hg19::chr2:101728712..101728734,+#_442689cc6837e7b894f8d67175d9ea04p@chr2:101728712..101728734, +
2.39e-66FFCP PHASE1:Hg19::chr20:55732283..55732288,-#_442689cc6837e7b894f8d67175d9ea04p@chr20:55732283..55732288, -
2.39e-66FFCP PHASE2:Hg19::chr2:101728712..101728734,+#_442689cc6837e7b894f8d67175d9ea04p@chr2:101728712..101728734, +
2.39e-66FFCP PHASE2:Hg19::chr20:55732283..55732288,-#_442689cc6837e7b894f8d67175d9ea04p@chr20:55732283..55732288, -
2.39e-66FFCP PHASE1:Hg19::chr2:220492830..220492865,+#_442689cc6837e7b894f8d67175d9ea04p16@SLC4A3

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0002079&oldid=3277362"