Personal tools

UBERON:0002105

From FANTOM5_SSTAR

Jump to: navigation, search

Name:vestibulo-auditory system
Namespace:FANTOM
Definition:"A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
Xrefs:
links:

AAO:0000631
FMA:7192
FMA:78500
[1]
[2]
MA:0002443
ncithesaurus:Auditory_System
NIF_GrossAnatomy:nlx_anat_090817
OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
TAO:0001138
XAO:0003195

ZFA:0001138
Synonyms: "auditory organ system" EXACT []
"auditory system" RELATED []
"auditory/vestibular system" RELATED []
"vestibuloauditory system" EXACT []
"vestibuloauditory system" RELATED []
Comments:Auditory system is general anatomical term in FMA
Alt_id: UBERON:FMA_7192-MA_0002443
Subset: functional_classification
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001032(sensory system)



Children

part of:UBERON:0001690 (ear),UBERON:0002827 (vestibulocochlear ganglion),UBERON:0004681 (vestibular system),UBERON:0016490 (auditory system)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11959-126C6 (Neurons - spiral ganglion, pool1)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002105 (vestibulo-auditory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_c61890a629f48235895cf0426ce3701cp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_c61890a629f48235895cf0426ce3701cp2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_c61890a629f48235895cf0426ce3701cp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_c61890a629f48235895cf0426ce3701cp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c61890a629f48235895cf0426ce3701cp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c61890a629f48235895cf0426ce3701cp7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_c61890a629f48235895cf0426ce3701cp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_c61890a629f48235895cf0426ce3701cp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_c61890a629f48235895cf0426ce3701cp3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c61890a629f48235895cf0426ce3701cp4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_c61890a629f48235895cf0426ce3701cp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_c61890a629f48235895cf0426ce3701cp10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c61890a629f48235895cf0426ce3701cp3@Epyc
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_c61890a629f48235895cf0426ce3701cp1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_c61890a629f48235895cf0426ce3701cp2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_c61890a629f48235895cf0426ce3701cp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_c61890a629f48235895cf0426ce3701cp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c61890a629f48235895cf0426ce3701cp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_c61890a629f48235895cf0426ce3701cp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_c61890a629f48235895cf0426ce3701cp7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_c61890a629f48235895cf0426ce3701cp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_c61890a629f48235895cf0426ce3701cp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_c61890a629f48235895cf0426ce3701cp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c61890a629f48235895cf0426ce3701cp1@Strc
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_c61890a629f48235895cf0426ce3701cp1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c61890a629f48235895cf0426ce3701cp2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_c61890a629f48235895cf0426ce3701cp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_c61890a629f48235895cf0426ce3701cp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c61890a629f48235895cf0426ce3701cp5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_c61890a629f48235895cf0426ce3701cp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_c61890a629f48235895cf0426ce3701cp3@Fanca
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_c61890a629f48235895cf0426ce3701cp4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_c61890a629f48235895cf0426ce3701cp1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c61890a629f48235895cf0426ce3701cp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_c61890a629f48235895cf0426ce3701cp10@Otof
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_c61890a629f48235895cf0426ce3701cp4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_c61890a629f48235895cf0426ce3701cp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c61890a629f48235895cf0426ce3701cp4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_c61890a629f48235895cf0426ce3701cp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_c61890a629f48235895cf0426ce3701cp2@Strc
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_c61890a629f48235895cf0426ce3701cp@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_c61890a629f48235895cf0426ce3701cp@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_c61890a629f48235895cf0426ce3701cp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_c61890a629f48235895cf0426ce3701cp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_c61890a629f48235895cf0426ce3701cp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_c61890a629f48235895cf0426ce3701cp1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_c61890a629f48235895cf0426ce3701cp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_c61890a629f48235895cf0426ce3701cp10@Otof
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_c61890a629f48235895cf0426ce3701cp@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_c61890a629f48235895cf0426ce3701cp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_c61890a629f48235895cf0426ce3701cp1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_c61890a629f48235895cf0426ce3701cp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_c61890a629f48235895cf0426ce3701cp21@Espn
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_c61890a629f48235895cf0426ce3701cp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_c61890a629f48235895cf0426ce3701cp@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_c61890a629f48235895cf0426ce3701cp6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_c61890a629f48235895cf0426ce3701cp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_c61890a629f48235895cf0426ce3701cp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_c61890a629f48235895cf0426ce3701cp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_c61890a629f48235895cf0426ce3701cp1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_c61890a629f48235895cf0426ce3701cp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_c61890a629f48235895cf0426ce3701cp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_c61890a629f48235895cf0426ce3701cp4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_c61890a629f48235895cf0426ce3701cp15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_c61890a629f48235895cf0426ce3701cp5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_c61890a629f48235895cf0426ce3701cp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_c61890a629f48235895cf0426ce3701cp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_c61890a629f48235895cf0426ce3701cp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_c61890a629f48235895cf0426ce3701cp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_c61890a629f48235895cf0426ce3701cp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_c61890a629f48235895cf0426ce3701cp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_c61890a629f48235895cf0426ce3701cp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_c61890a629f48235895cf0426ce3701cp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_c61890a629f48235895cf0426ce3701cp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_c61890a629f48235895cf0426ce3701cp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_c61890a629f48235895cf0426ce3701cp7@A730017C20Rik
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_c61890a629f48235895cf0426ce3701cp@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_c61890a629f48235895cf0426ce3701cp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_c61890a629f48235895cf0426ce3701cp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_c61890a629f48235895cf0426ce3701cp1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_c61890a629f48235895cf0426ce3701cp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_c61890a629f48235895cf0426ce3701cp2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c61890a629f48235895cf0426ce3701cp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_c61890a629f48235895cf0426ce3701cp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_c61890a629f48235895cf0426ce3701cp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c61890a629f48235895cf0426ce3701cp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_c61890a629f48235895cf0426ce3701cp2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_c61890a629f48235895cf0426ce3701cp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_c61890a629f48235895cf0426ce3701cp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_c61890a629f48235895cf0426ce3701cp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_c61890a629f48235895cf0426ce3701cp@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_c61890a629f48235895cf0426ce3701cp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_c61890a629f48235895cf0426ce3701cp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_c61890a629f48235895cf0426ce3701cp@chr7:133957514..133957529, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp3.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002105&oldid=3277374"