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UBERON:0001690

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Name:ear
Namespace:FANTOM
Definition:"Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
Xrefs:
links:

AAO:0011014
BTO:0000368
EFO:0000826
EHDAA2:0000423
EHDAA:502
EMAPA:16193
EV:0100353
FMA:52780
GAID:62
galen:Ear
[1]
MA:0000236
MAT:0000138
MESH:A.01.456.313
MIAA:0000138
ncithesaurus:Ear
NIF_GrossAnatomy:birnlex_1062
OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
SCTID:1910005
VHOG:0000330

XAO:0000189
Synonyms: "auditory apparatus" RELATED []
"auris" RELATED [BTO:0000368]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system)



Children

part of:UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_1d13cb136fd2abf98a4e0d45469142ffp5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_1d13cb136fd2abf98a4e0d45469142ffp7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_1d13cb136fd2abf98a4e0d45469142ffp13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_1d13cb136fd2abf98a4e0d45469142ffp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_1d13cb136fd2abf98a4e0d45469142ffp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_1d13cb136fd2abf98a4e0d45469142ffp9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_1d13cb136fd2abf98a4e0d45469142ffp12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_1d13cb136fd2abf98a4e0d45469142ffp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Strc
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_1d13cb136fd2abf98a4e0d45469142ffp6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_1d13cb136fd2abf98a4e0d45469142ffp5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_1d13cb136fd2abf98a4e0d45469142ffp13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_1d13cb136fd2abf98a4e0d45469142ffp4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_1d13cb136fd2abf98a4e0d45469142ffp9@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_1d13cb136fd2abf98a4e0d45469142ffp7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_1d13cb136fd2abf98a4e0d45469142ffp2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_1d13cb136fd2abf98a4e0d45469142ffp11@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_1d13cb136fd2abf98a4e0d45469142ffp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_1d13cb136fd2abf98a4e0d45469142ffp7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13414289..13414295, +

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