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UBERON:0009955

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Name:neurogenic placode
Namespace:FANTOM
Definition:"Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
Xrefs:
links:

TAO:0001309

ZFA:0001309
Synonyms: "neurogenic placodes" EXACT PLURAL [ZFA:0001309]
"placodae neurogenicae" RELATED LATIN [Wikipedia:Neurogenic_placodes]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002546(cranial placode)



Children

is a:UBERON:0003050 (olfactory placode),UBERON:0003067 (dorsolateral placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009955 (neurogenic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_3a60b0cd6868b4b766bca2e34977f532p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_3a60b0cd6868b4b766bca2e34977f532p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_3a60b0cd6868b4b766bca2e34977f532p3@Fanca
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_3a60b0cd6868b4b766bca2e34977f532p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_3a60b0cd6868b4b766bca2e34977f532p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_3a60b0cd6868b4b766bca2e34977f532p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_3a60b0cd6868b4b766bca2e34977f532p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_3a60b0cd6868b4b766bca2e34977f532p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_3a60b0cd6868b4b766bca2e34977f532p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_3a60b0cd6868b4b766bca2e34977f532p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_3a60b0cd6868b4b766bca2e34977f532p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_3a60b0cd6868b4b766bca2e34977f532p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_3a60b0cd6868b4b766bca2e34977f532p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_3a60b0cd6868b4b766bca2e34977f532p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_3a60b0cd6868b4b766bca2e34977f532p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_3a60b0cd6868b4b766bca2e34977f532p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_3a60b0cd6868b4b766bca2e34977f532p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_3a60b0cd6868b4b766bca2e34977f532p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_3a60b0cd6868b4b766bca2e34977f532p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_3a60b0cd6868b4b766bca2e34977f532p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_3a60b0cd6868b4b766bca2e34977f532p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_3a60b0cd6868b4b766bca2e34977f532p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_3a60b0cd6868b4b766bca2e34977f532p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_3a60b0cd6868b4b766bca2e34977f532p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_3a60b0cd6868b4b766bca2e34977f532p7@A730017C20Rik
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_3a60b0cd6868b4b766bca2e34977f532p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_3a60b0cd6868b4b766bca2e34977f532p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_3a60b0cd6868b4b766bca2e34977f532p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_3a60b0cd6868b4b766bca2e34977f532p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_3a60b0cd6868b4b766bca2e34977f532p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_3a60b0cd6868b4b766bca2e34977f532p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_3a60b0cd6868b4b766bca2e34977f532p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_3a60b0cd6868b4b766bca2e34977f532p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_3a60b0cd6868b4b766bca2e34977f532p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_3a60b0cd6868b4b766bca2e34977f532p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_3a60b0cd6868b4b766bca2e34977f532p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_3a60b0cd6868b4b766bca2e34977f532p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_3a60b0cd6868b4b766bca2e34977f532p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_3a60b0cd6868b4b766bca2e34977f532p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_3a60b0cd6868b4b766bca2e34977f532p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_3a60b0cd6868b4b766bca2e34977f532p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_3a60b0cd6868b4b766bca2e34977f532p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_3a60b0cd6868b4b766bca2e34977f532p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:11599532..11599539, -

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