Personal tools

UBERON:0003258

From FANTOM5_SSTAR

Jump to: navigation, search

Name:endoderm of foregut
Namespace:FANTOM
Definition:"An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0000566

EHDAA:524
Synonyms: "foregut endoderm" EXACT [OBOL:automatic]
Comments:TODO - check

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000490(unilaminar epithelium),UBERON:0005911(endo-epithelium),UBERON:0015833(foregut epithelium)
develops_from:UBERON:0000925(endoderm)
part_of:UBERON:0001041(foregut)



Children

is a:UBERON:0004117 (pharyngeal pouch),UBERON:0007690 (early pharyngeal endoderm)
part of:UBERON:0008947 (respiratory primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003258 (endoderm of foregut), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.21e-66FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_951a1ec5d60f9a585b9bb5557d81bf97p4@Tbx4
1.21e-66FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_951a1ec5d60f9a585b9bb5557d81bf97p4@Tbx4
4.71e-66FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_e68e02132d734081ae71742a5a26395ap@chr9:20829911..20829920, +
4.71e-66FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_e68e02132d734081ae71742a5a26395ap@chr9:20829911..20829920, +
1.06e-62FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_a27d5c37d44a01a76dafac683f35cb0cp1@ENSMUST00000134305
1.06e-62FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_a27d5c37d44a01a76dafac683f35cb0cp1@ENSMUST00000134305
1.52e-61FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_be65beddee7f988e0514772d1f9b2cabp1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.52e-61FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_be65beddee7f988e0514772d1f9b2cabp1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.91e-61FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_f7d5f7246390d740f93ef89097904eb2p6@Tbx4
1.91e-61FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_f7d5f7246390d740f93ef89097904eb2p6@Tbx4
5.56e-61FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_cacabe38f2faf8e6f503598ac83985cap@chr11:59457994..59457997, -
5.56e-61FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_cacabe38f2faf8e6f503598ac83985cap@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_cacabe38f2faf8e6f503598ac83985cap@chr8:94878479..94878503, -
5.56e-61FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_cacabe38f2faf8e6f503598ac83985cap@chr4:138812977..138812992, +
5.56e-61FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_cacabe38f2faf8e6f503598ac83985cap@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_cacabe38f2faf8e6f503598ac83985cap@chr8:94878479..94878503, -
5.56e-61FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_cacabe38f2faf8e6f503598ac83985cap@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_cacabe38f2faf8e6f503598ac83985cap@chr4:138812977..138812992, +
5.56e-61FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_cacabe38f2faf8e6f503598ac83985cap@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_cacabe38f2faf8e6f503598ac83985cap@chr12:57636003..57636017, -
1.35e-60FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_7f08c2635b5fe9941abaaae64eb31209p9@Nav2
1.35e-60FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_7f08c2635b5fe9941abaaae64eb31209p9@Nav2
2.87e-58FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_c2de279ce30ef2b071506486aed774d6p@chr12:57633887..57633899, -
2.87e-58FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_c2de279ce30ef2b071506486aed774d6p@chr12:57633887..57633899, -
1.23e-57FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_4cc1a9bc9aae600221beb27dac4449adp8@Nkx2-1
1.23e-57FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_4cc1a9bc9aae600221beb27dac4449adp8@Nkx2-1
1.37e-57FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_e7707349e061f0b165490d40adf75edfp2@E030019B13Rik
1.37e-57FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_e7707349e061f0b165490d40adf75edfp2@E030019B13Rik
1.53e-57FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_8afc95442496d483fc1e5bbd60123541p10@Nebl
1.53e-57FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_8afc95442496d483fc1e5bbd60123541p10@Nebl
1.7e-57FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_8fbde072fd66c5d39ad533a0353e3afdp9@Nkx2-1
1.7e-57FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_8fbde072fd66c5d39ad533a0353e3afdp9@Nkx2-1
1.79e-56FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_e50b6609bfa39d8efd57ebb8bade61f3p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_e50b6609bfa39d8efd57ebb8bade61f3p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_e50b6609bfa39d8efd57ebb8bade61f3p3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_e50b6609bfa39d8efd57ebb8bade61f3p3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_e50b6609bfa39d8efd57ebb8bade61f3p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_e50b6609bfa39d8efd57ebb8bade61f3p3@Trpm6
2.01e-56FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_b059de7f354677ffca07a8718b808ec0p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_b059de7f354677ffca07a8718b808ec0p@chr12:57636278..57636289, +
2.01e-56FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_b059de7f354677ffca07a8718b808ec0p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_b059de7f354677ffca07a8718b808ec0p@chr12:57636278..57636289, +
2.24e-56FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_2565e48f1f8091d459b7722b61726cf5p@chr4:138812999..138813015, +
2.24e-56FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_2565e48f1f8091d459b7722b61726cf5p@chr4:138812999..138813015, +
3.93e-56FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_11be555a46ff1b41e465a22bba766629p7@Il18r1
3.93e-56FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_11be555a46ff1b41e465a22bba766629p7@Il18r1
6.2e-56FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr14:70921265..70921285, -
6.2e-56FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr2:66524237..66524246, -
6.2e-56FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_880b4d1ad3de83b353a2b3e043037d1fp3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_880b4d1ad3de83b353a2b3e043037d1fp4@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_880b4d1ad3de83b353a2b3e043037d1fp@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr2:164374820..164374835, -
6.2e-56FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr14:70921265..70921285, -
6.2e-56FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_880b4d1ad3de83b353a2b3e043037d1fp4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_880b4d1ad3de83b353a2b3e043037d1fp@chr1:184610062..184610074, +
6.2e-56FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr14:70922576..70922589, -
6.2e-56FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr2:164374820..164374835, -
6.2e-56FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_880b4d1ad3de83b353a2b3e043037d1fp3@Sftpb
9.42e-56FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_c13a3f3c9e324ab1183065989a184a77p@chr5:120282691..120282701, +
9.42e-56FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_c13a3f3c9e324ab1183065989a184a77p@chr5:120282691..120282701, +
1.34e-54FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_d6b8d784ee19621de03bd313ca498ce2p@chr12:57636911..57636924, -
1.34e-54FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_d6b8d784ee19621de03bd313ca498ce2p@chr12:57636911..57636924, -
3.97e-54FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_b0d33f312feddd5288ef2399ef6dd030p4@E030019B13Rik
3.97e-54FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_b0d33f312feddd5288ef2399ef6dd030p4@E030019B13Rik
1.46e-52FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_5335d5c5b6235620d2940868e4df70edp@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_5335d5c5b6235620d2940868e4df70edp@chr14:70922007..70922052, +
1.46e-52FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_5335d5c5b6235620d2940868e4df70edp@chr12:57623172..57623185, -
1.46e-52FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_5335d5c5b6235620d2940868e4df70edp@chr12:57623172..57623185, -
1.62e-52FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_c70dff63f6b914e65754b39fd0815b44p@chr5:28785436..28785450, -
1.62e-52FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_c70dff63f6b914e65754b39fd0815b44p@chr5:28785436..28785450, -
1.8e-52FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_b3312ade6c09e43d3733c8fd50857b86p@chr14:70922459..70922482, -
1.8e-52FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_b3312ade6c09e43d3733c8fd50857b86p@chr14:70922459..70922482, -
5.65e-52FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_0b47e59ca7c0555c7d998a43281b8956p4@Etv5
5.65e-52FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_0b47e59ca7c0555c7d998a43281b8956p4@Etv5
1.97e-51FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72259797..72259814, +
1.97e-51FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_dd3578b29adec1e2263e37e4b8c22f50p4@Lamp3
1.97e-51FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr12:57376690..57376716, -
1.97e-51FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72263977..72263993, +
1.97e-51FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72263977..72263993, +
1.97e-51FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72264418..72264441, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72264890..72264911, +
1.97e-51FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_dd3578b29adec1e2263e37e4b8c22f50p4@Lamp3
2.21e-51FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_2e1f7317689899bdbc6ea15589309031p@chr6:72264609..72264653, -
2.21e-51FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_2e1f7317689899bdbc6ea15589309031p@chr6:72264609..72264653, -
2.47e-51FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_48ee725e0e8067c089139c02ce39a8fbp@chr6:129378567..129378573, -
2.47e-51FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_48ee725e0e8067c089139c02ce39a8fbp@chr6:129378567..129378573, -
3.74e-51FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_c5d77647e6c4f396001370a06a0d059cp16@Pde5a
3.74e-51FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_c5d77647e6c4f396001370a06a0d059cp16@Pde5a
5.44e-51FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_afd23d8464671da5a885843e01d43ce6p7@Nkx2-1
5.44e-51FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_afd23d8464671da5a885843e01d43ce6p7@Nkx2-1

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0003258&oldid=3277537"