Personal tools

UBERON:0002319

From FANTOM5_SSTAR

Jump to: navigation, search

Name:mesangium
Definition:"inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." Wikipedia:Mesangium
Xrefs:
links:

BTO:0002494
EMAPA:28248
FMA:84139
MA:0002617
MESH:A.05.810.453.736.520.380

ncithesaurus:Mesangium
Comments:WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished.
Alt_id: UBERON:FMA_84139-MA_0002617
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0003567(abdomen connective tissue),UBERON:0003891(stroma),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure)
part_of:UBERON:0000074(renal glomerulus),UBERON:0005215(kidney interstitium)



Children

part of:UBERON:0002321 (extraglomerular mesangium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002319 (mesangium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
2.34e-79FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_c81513fb666c86109c609c8742e91a38p@chr2:133426030..133426041, -
2.34e-79FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_c81513fb666c86109c609c8742e91a38p@chr2:133426030..133426041, -
3.49e-79FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_43d1d602090cd22c026a06117a8d1872p23@TTC39A
3.49e-79FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_43d1d602090cd22c026a06117a8d1872p23@TTC39A
2.03e-66FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_8ae2d104090fdb2d489bf1009c3475aep@chr2:133426106..133426117, -
2.03e-66FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_8ae2d104090fdb2d489bf1009c3475aep@chr2:133426106..133426117, -
1.46e-50FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_c423f62bcf4cddae314c460ede2e2aadp@chr10:134535354..134535366, -
1.46e-50FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_c423f62bcf4cddae314c460ede2e2aadp@chr10:134535354..134535366, -
1.46e-50FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_c423f62bcf4cddae314c460ede2e2aadp8@PAX2
1.46e-50FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_c423f62bcf4cddae314c460ede2e2aadp8@PAX2
3.11e-50FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_e8e6fb1f5202ae0515b6e2d6c60b9dc4p19@PEMT
3.11e-50FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_e8e6fb1f5202ae0515b6e2d6c60b9dc4p19@PEMT
4.52e-50FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_2e677e1044cfd35b2d09728b1c797feep10@PAX2
4.52e-50FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_2e677e1044cfd35b2d09728b1c797feep10@PAX2
4.52e-50FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_2e677e1044cfd35b2d09728b1c797feep@chr9:81641483..81641491, -
4.52e-50FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_2e677e1044cfd35b2d09728b1c797feep@chr9:81641483..81641491, -
8.98e-41FFCP PHASE2:Hg19::chr17:171082..171101,+#_83fb2c4938b6295ad089af44cd9db6b8p@chr17:171082..171101, +
8.98e-41FFCP PHASE1:Hg19::chr17:171082..171101,+#_83fb2c4938b6295ad089af44cd9db6b8p@chr17:171082..171101, +
1.1e-40FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_12c49c2327a177d84f64362866b7b157p@chr3:172384246..172384250, +
1.1e-40FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_12c49c2327a177d84f64362866b7b157p@chr3:172384246..172384250, +
1.64e-40FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_29430b1d6f435a156900e011e106282ep@chr1:45087902..45087912, +
1.64e-40FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_29430b1d6f435a156900e011e106282e+, p@chr1:45087902..45087912
3.68e-40FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_17eb6ba3287d7cff079bab4bf2ddfb3cp5@PAX2
3.68e-40FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_17eb6ba3287d7cff079bab4bf2ddfb3cp5@PAX2
8.2e-37FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_fde88588a9f8a619354824113f177438p6@PAX2
8.2e-37FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_fde88588a9f8a619354824113f177438p6@PAX2
9.84e-37FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_5a79f830d8f73d22abd0f9263319f35ap3@CRB2
9.84e-37FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_5a79f830d8f73d22abd0f9263319f35ap3@CRB2
6.0e-34FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_4520ce32e55634ce6b8620c73fed66e3p@chr2:113984760..113984792, +
6.0e-34FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_4520ce32e55634ce6b8620c73fed66e3p@chr2:113984760..113984792, +
7.05e-34FFCP PHASE2:Hg19::chr1:858638..858648,+#_487e47a109d2a4890ffe464ee5a6d584p@chr1:858638..858648, +
7.05e-34FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_487e47a109d2a4890ffe464ee5a6d584p@chr7:27164585..27164612, -
7.05e-34FFCP PHASE1:Hg19::chr1:858638..858648,+#_487e47a109d2a4890ffe464ee5a6d584p@chr1:858638..858648, +
7.05e-34FFCP PHASE2:Hg19::chr11:555661..555679,+#_487e47a109d2a4890ffe464ee5a6d584p@chr11:555661..555679, +
7.05e-34FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_487e47a109d2a4890ffe464ee5a6d584p@chr7:27164585..27164612, -
7.05e-34FFCP PHASE1:Hg19::chr11:555661..555679,+#_487e47a109d2a4890ffe464ee5a6d584p@chr11:555661..555679, +
8.39e-34FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_e2fc01b39b598473a99ec10165ba6688p13@SPOCK2
8.39e-34FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_e2fc01b39b598473a99ec10165ba6688p13@SPOCK2
1.17e-33FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_61c35d63af4f07a6f1dbf3ef0400d669p25@PHLDB1
1.17e-33FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_61c35d63af4f07a6f1dbf3ef0400d669p25@PHLDB1
3.35e-32FFCP PHASE2:Hg19::chr2:693362..693373,+#_988a7c8548c7caaf9869de1e6db55b44p@chr2:693362..693373, +
3.35e-32FFCP PHASE1:Hg19::chr2:693362..693373,+#_988a7c8548c7caaf9869de1e6db55b44p@chr2:693362..693373, +
2.54e-31FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_11fa3d8a1e300e10ad0cb5dcb03dfd5cp1@RIPPLY1
2.54e-31FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_11fa3d8a1e300e10ad0cb5dcb03dfd5cp1@RIPPLY1
8.05e-30FFCP PHASE2:Hg19::chr17:171147..171161,+#_5810dfcbb6480630fc1cee729266895cp@chr17:171147..171161, +
8.05e-30FFCP PHASE1:Hg19::chr17:171147..171161,+#_5810dfcbb6480630fc1cee729266895cp@chr17:171147..171161, +
2.96e-29FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_ddc69187183fa2fb4ac32f6422672bc6p@chr2:165477405..165477418, -
2.96e-29FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_ddc69187183fa2fb4ac32f6422672bc6-, p@chr2:165477405..165477418
4.55e-29FFCP PHASE2:Hg19::chr1:874109..874143,+#_5a5dce170b165c792c70711d0b9d646ep@chr1:874109..874143, +
4.55e-29FFCP PHASE1:Hg19::chr1:874109..874143,+#_5a5dce170b165c792c70711d0b9d646ep@chr1:874109..874143, +
1.43e-28FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_555a0be0ead5ff2b8e28b0cabcdac929p@chr2:113999199..113999214, +
1.43e-28FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_555a0be0ead5ff2b8e28b0cabcdac929p@chr2:113999199..113999214, +
1.83e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_c7e11ae2cd6dc4692770f83378b198dcp@chr16:86604624..86604648, +
1.83e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_c7e11ae2cd6dc4692770f83378b198dcp7@LRRN4
1.83e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_c7e11ae2cd6dc4692770f83378b198dcp7@LRRN4
1.83e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_c7e11ae2cd6dc4692770f83378b198dcp@chr16:86604624..86604648, +
2.74e-27FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_dfa7a16c9390d24fb9188d911aadb45ap@chr19:56091499..56091517, -
2.74e-27FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_dfa7a16c9390d24fb9188d911aadb45a-, p@chr19:56091499..56091517
2.78e-26FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_22d3d2a84e83e5f11054ef3f35775b99p@chr9:112260040..112260045, +
2.78e-26FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_22d3d2a84e83e5f11054ef3f35775b99p@chr9:112260040..112260045, +
4.63e-26FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_7656936f4d6ced936d87a40f0c15b33cp@chr22:30645170..30645182, -
4.63e-26FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_7656936f4d6ced936d87a40f0c15b33cp@chr22:30645170..30645182, -
7.14e-26FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_a916886536f9b57be6a1f74e03d65819p@chr8:22419319..22419327, +
7.14e-26FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_a916886536f9b57be6a1f74e03d65819p@chr8:22419319..22419327, +
9.18e-26FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_067a7c334142f6f5be0b31ffd89f670ep@chr2:176973165..176973169, -
9.18e-26FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_067a7c334142f6f5be0b31ffd89f670ep12@TRIM16
9.18e-26FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_067a7c334142f6f5be0b31ffd89f670ep15@WT1
9.18e-26FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_067a7c334142f6f5be0b31ffd89f670ep@chr6:31833005..31833017, -
9.18e-26FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_067a7c334142f6f5be0b31ffd89f670ep14@PAX2
9.18e-26FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_067a7c334142f6f5be0b31ffd89f670ep@chr20:6031540..6031548, -
9.18e-26FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_067a7c334142f6f5be0b31ffd89f670ep14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_067a7c334142f6f5be0b31ffd89f670ep15@WT1
9.18e-26FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_067a7c334142f6f5be0b31ffd89f670ep@chr2:176973165..176973169, -
9.18e-26FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_067a7c334142f6f5be0b31ffd89f670ep12@TRIM16
9.18e-26FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_067a7c334142f6f5be0b31ffd89f670ep@chr20:6031540..6031548, -
9.18e-26FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_067a7c334142f6f5be0b31ffd89f670ep@chr8:28196820..28196830, +
9.18e-26FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_067a7c334142f6f5be0b31ffd89f670ep@chr8:28196820..28196830, +
9.18e-26FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_067a7c334142f6f5be0b31ffd89f670ep@chr6:31833005..31833017, -
2.37e-25FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_1a816c6bc2537ba5917586db2bdab190p1@ENST00000523364, p1@uc010kux.1
2.37e-25FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_1a816c6bc2537ba5917586db2bdab190p1@ENST00000523364, p1@uc010kux.1
4.38e-25FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_6627061d99f6fa860e0cbe3079ee08afp16@HOXA10
4.38e-25FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_6627061d99f6fa860e0cbe3079ee08afp16@HOXA10
4.43e-25FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_024155d4b1bfb1c96bf4b5ece6f7af7cp6@MTMR11
4.43e-25FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_024155d4b1bfb1c96bf4b5ece6f7af7cp6@MTMR11
7.09e-25FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0032c61b6baf36a01ec0f043ea8ed237p4@PAX2
7.09e-25FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0032c61b6baf36a01ec0f043ea8ed237p4@PAX2
3.76e-24FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_87e460f6859ffb6c3dc6cb9e57e25fa7p@chr1:46797583..46797614, -
3.76e-24FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_87e460f6859ffb6c3dc6cb9e57e25fa7p@chr1:46797583..46797614, -
7.62e-24FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_98587b8e20032c31b5e34991f4b5000ap@chr6:94129519..94129544, +
7.62e-24FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_98587b8e20032c31b5e34991f4b5000ap@chr6:94129519..94129544, +
8.02e-24FFCP PHASE2:Hg19::chr2:693380..693398,+#_81af350e48efd606c42320296dc73439p@chr2:693380..693398, +
8.02e-24FFCP PHASE1:Hg19::chr2:693380..693398,+#_81af350e48efd606c42320296dc73439p@chr2:693380..693398, +
8.98e-24FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_0dab9e7c42dc61a63eb395fa36d2e1a4p@chr2:133426077..133426103, -
8.98e-24FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_0dab9e7c42dc61a63eb395fa36d2e1a4p@chr2:133426077..133426103, -
1.99e-23FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_090ca61caaaf86052af43640058da272p5@WT1-AS
1.99e-23FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_090ca61caaaf86052af43640058da272p5@WT1-AS
4.37e-23FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_21b21414c9ed850d15e21aae77b7518dp@chr2:176968471..176968476, -
4.37e-23FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_21b21414c9ed850d15e21aae77b7518dp@chr2:176968471..176968476, -
4.89e-23FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_54bd7ea65274d72921eca858f3545e4cp1@ENST00000469884
4.89e-23FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_54bd7ea65274d72921eca858f3545e4cp1@ENST00000469884

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0002319&oldid=1837585"