Personal tools

UBERON:0005068

From FANTOM5_SSTAR

Jump to: navigation, search

Name:neural rod
Namespace:FANTOM
Definition:"a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133]
Xrefs:
links:

EFO:0003498
TAO:0000133

ZFA:0000133

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0016879(future central nervous system)
develops_from:UBERON:0007135(neural keel)
part_of:UBERON:0000922(embryo)



Children

develops from:UBERON:0001049 (neural tube)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005068 (neural rod), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
9.5e-145FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_23d573ed248cde2f100556f22aa3804ep2@RFX4
9.5e-145FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_23d573ed248cde2f100556f22aa3804ep2@RFX4
4.41e-144FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_b7d4f5f0361092816221d6f1ddb1a1d4p@chr5:87439352..87439386, -
4.41e-144FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_b7d4f5f0361092816221d6f1ddb1a1d4p@chr5:87439352..87439386, -
5.06e-144FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_2ccc850bbc21cdb12fbd59f35ba0eaaep1@ENST00000412957
5.06e-144FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_2ccc850bbc21cdb12fbd59f35ba0eaaep1@ENST00000412957
1.1e-143FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_357e842d159a347c18e30a367a599021p3@CTNND2
1.1e-143FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_357e842d159a347c18e30a367a599021p3@CTNND2
1.17e-142FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_4d1f0782576b77e22427afc808b922f7p2@GABRG1
1.17e-142FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_4d1f0782576b77e22427afc808b922f7p2@GABRG1
2.68e-142FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_b4e9fc97bf4d950be9f1198cd94b7245p3@NRXN1
2.68e-142FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_b4e9fc97bf4d950be9f1198cd94b7245p3@NRXN1
1.04e-141FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_cf2317d562151187f1d7caaceb3c4bb5p4@APC
1.04e-141FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_cf2317d562151187f1d7caaceb3c4bb5p4@APC
1.18e-141FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_ba05abb3985828bf7165dd418d48e757p8@CTNND2
1.18e-141FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_ba05abb3985828bf7165dd418d48e757p8@CTNND2
7.98e-141FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_d50a37c232455b053a2dcffe2fd90a04p7@DTNA
7.98e-141FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_d50a37c232455b053a2dcffe2fd90a04p7@DTNA
1.0e-140FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_8e8ca80a51c9023e14887e681399d289p2@KCNJ16
1.0e-140FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_8e8ca80a51c9023e14887e681399d289p2@KCNJ16
2.58e-140FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_debc94d0b6961e0778cb86a0066605dcp@chr5:146314142..146314146, -
2.58e-140FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_debc94d0b6961e0778cb86a0066605dcp@chr5:146314142..146314146, -
1.46e-139FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_34a60db80c7374229f6f0e589094063ep1@RFX4
1.46e-139FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_34a60db80c7374229f6f0e589094063ep1@RFX4
9.16e-139FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_99f9ec0ceb1abe46d250730d31b22ceap4@RFX4
9.16e-139FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_99f9ec0ceb1abe46d250730d31b22ceap4@RFX4
1.47e-138FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_0b05f49541a2927a77055de994e34d8ap9@PRKACB
1.47e-138FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_0b05f49541a2927a77055de994e34d8ap9@PRKACB
4.62e-138FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_23f4432fb834e9af2e9377f26ea304dfp2@CTNND2
4.62e-138FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_23f4432fb834e9af2e9377f26ea304dfp2@CTNND2
1.71e-137FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_961f445ef687d429e7622d3ca40c09b4p@chr15:46702499..46702523, +
1.71e-137FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_961f445ef687d429e7622d3ca40c09b4p@chr15:46702499..46702523, +
5.75e-137FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_610bb8d2ea6bdd19cd3913b7efc0c4f8p17@PRKACB
5.75e-137FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_610bb8d2ea6bdd19cd3913b7efc0c4f8p17@PRKACB
6.55e-137FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_09c9b693a53b86e4336c08d859bee7eep17@NTRK2
6.55e-137FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_09c9b693a53b86e4336c08d859bee7eep17@NTRK2
8.93e-137FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_aa3c9bd945ced562282502fcfe942085p@chr6:80131670..80131724, +
8.93e-137FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_aa3c9bd945ced562282502fcfe942085p@chr6:80131670..80131724, +
2.51e-136FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_89e3ab1cfba02d9e6707add2e64663c2p4@SLC1A2
2.51e-136FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_89e3ab1cfba02d9e6707add2e64663c2p4@SLC1A2
2.84e-136FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_b2f39fb21cacb489f17b780a09acad03p1@ATP10B
2.84e-136FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_b2f39fb21cacb489f17b780a09acad03p1@ATP10B
3.14e-136FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_610ddf882562e9c0dd24bc3e33f4c191p8@PRKCZ
3.14e-136FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_610ddf882562e9c0dd24bc3e33f4c191p8@PRKCZ
4.26e-136FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_726066f14073866f1c70f441798a6689p9@GPM6B
4.26e-136FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_726066f14073866f1c70f441798a6689p9@GPM6B
5.24e-136FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_78c547fa3822dd0e31325d03548e6e8fp5@AQP4
5.24e-136FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_78c547fa3822dd0e31325d03548e6e8fp5@AQP4
5.54e-136FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_67c67c723df3ea9c520ca35399b998f6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
5.54e-136FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_67c67c723df3ea9c520ca35399b998f6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
9.78e-136FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_93f22949b27e5985aafe6ab7797af660p8@DST
9.78e-136FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_93f22949b27e5985aafe6ab7797af660p8@DST
1.52e-135FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_d2314a3eb679f0c56a486db8f105a452p@chr7:47420733..47420758, -
1.52e-135FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_d2314a3eb679f0c56a486db8f105a452p@chr7:47420733..47420758, -
2.32e-135FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_3a61d74830ff1952e11c15a4ad59d549p1@ANKFN1
2.32e-135FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_3a61d74830ff1952e11c15a4ad59d549p1@ANKFN1
3.21e-135FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_f002f35eb4d523c91c26b6b7643affeap1@GABRG1
3.21e-135FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_f002f35eb4d523c91c26b6b7643affeap1@GABRG1
5.25e-135FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_dbdd7389c6529437cea7faaaba215bd4p@chr17:7558857..7558903, +
5.25e-135FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_dbdd7389c6529437cea7faaaba215bd4p@chr17:7558857..7558903, +
8.03e-135FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_e9d9ef711e43f3735e32454d2b6302c3p3@SFXN5
8.03e-135FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_e9d9ef711e43f3735e32454d2b6302c3p3@SFXN5
1.91e-134FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_68e3d076a3957590dd7385e4d399ad35p3@GABRG1
1.91e-134FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_68e3d076a3957590dd7385e4d399ad35p3@GABRG1
2.97e-134FFCP PHASE1:Hg19::chr18:32398400..32398416,+#_ccd2384be8a635b8e3cf5d2a67388c1ap10@DTNA
2.97e-134FFCP PHASE2:Hg19::chr18:32398400..32398416,+#_ccd2384be8a635b8e3cf5d2a67388c1ap10@DTNA
4.25e-134FFCP PHASE2:Hg19::chr18:32398372..32398394,+#_336ace92a71c611d91889888dd747309p5@DTNA
4.25e-134FFCP PHASE1:Hg19::chr18:32398372..32398394,+#_336ace92a71c611d91889888dd747309p5@DTNA
4.84e-134FFCP PHASE1:Hg19::chr17:42989121..42989166,-#_987384af4e4fd8ff2a627eeb1a2ab85bp7@GFAP
4.84e-134FFCP PHASE2:Hg19::chr17:42989121..42989166,-#_987384af4e4fd8ff2a627eeb1a2ab85bp7@GFAP
5.15e-134FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_33c6201aa54432b6a36f6b752c4d17a1p2@PAQR6
5.15e-134FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_33c6201aa54432b6a36f6b752c4d17a1p2@PAQR6
1.37e-133FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_00acd0d7fa075e04471f5bdd639a4c46p2@uc002fch.1
1.37e-133FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_00acd0d7fa075e04471f5bdd639a4c46p2@uc002fch.1
1.42e-133FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_a9c796f72c8d98f2a09e59a248e2944bp2@SRCIN1
1.42e-133FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_a9c796f72c8d98f2a09e59a248e2944bp2@SRCIN1
1.45e-133FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_0563ac877abef115b3b1baca99cb7562p4@ARHGEF26-AS1
1.45e-133FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_0563ac877abef115b3b1baca99cb7562p4@ARHGEF26-AS1
2.38e-133FFCP PHASE2:Hg19::chr12:41221684..41221704,+#_e5452db34c28560978dded320e715358p5@CNTN1
2.38e-133FFCP PHASE1:Hg19::chr12:41221684..41221704,+#_e5452db34c28560978dded320e715358p5@CNTN1
2.91e-133FFCP PHASE1:Hg19::chr5:11384929..11384947,-#_f6e92ad9fa932fb83bff952837441bb6p15@CTNND2
2.91e-133FFCP PHASE2:Hg19::chr5:11384929..11384947,-#_f6e92ad9fa932fb83bff952837441bb6p15@CTNND2
3.31e-133FFCP PHASE1:Hg19::chr12:57980138..57980165,+#_f292dd7777513e44e28c0dbae4751e17p3@KIF5A
3.31e-133FFCP PHASE2:Hg19::chr12:57980138..57980165,+#_f292dd7777513e44e28c0dbae4751e17p3@KIF5A
3.45e-133FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_d50452af7b1e63d10a1165581e4b039cp1@GPR61
3.45e-133FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_d50452af7b1e63d10a1165581e4b039cp1@GPR61
1.11e-132FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_97fa96589a2fc0e288ea2f92132fa9dcp5@NKAIN3
1.11e-132FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_97fa96589a2fc0e288ea2f92132fa9dcp5@NKAIN3
1.25e-132FFCP PHASE1:Hg19::chr15:30261066..30261096,-#_8ebaf09cb41be44aedbda7c22de7359ep12@TJP1
1.25e-132FFCP PHASE2:Hg19::chr15:30261066..30261096,-#_8ebaf09cb41be44aedbda7c22de7359ep12@TJP1
1.94e-132FFCP PHASE2:Hg19::chr17:7560542..7560578,+#_bb6363dd697e684d7b706e6b02ad7b45p4@ATP1B2
1.94e-132FFCP PHASE1:Hg19::chr17:7560542..7560578,+#_bb6363dd697e684d7b706e6b02ad7b45p4@ATP1B2
2.17e-132FFCP PHASE1:Hg19::chr7:29519599..29519612,+#_5e56d0b2e9cc405533f9e2b6f7e20149p9@CHN2
2.17e-132FFCP PHASE2:Hg19::chr7:29519599..29519612,+#_5e56d0b2e9cc405533f9e2b6f7e20149p9@CHN2
2.85e-132FFCP PHASE1:Hg19::chr12:102060112..102060135,+#_b1383e3da8323006144196b2441b59efp4@MYBPC1
2.85e-132FFCP PHASE2:Hg19::chr12:102060112..102060135,+#_b1383e3da8323006144196b2441b59efp4@MYBPC1
3.19e-132FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_7c08ca6be3583b12cd50d310777088cdp1@LOC100289347
3.19e-132FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_7c08ca6be3583b12cd50d310777088cdp1@LOC100289347
4.04e-132FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_c997819c226fb9ae381d00622716b85ep9@MAP2
4.04e-132FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_c997819c226fb9ae381d00622716b85ep9@MAP2










Property "Property value" (as page type) with input value "UBPROP:0000001 "An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.