Personal tools

UBERON:0007135

From FANTOM5_SSTAR

Jump to: navigation, search

Name:neural keel
Namespace:FANTOM
Definition:"An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576]
Xrefs:
links:

EFO:0003497
TAO:0000131
ZFA:0000131

ZFIN:ZDB-ANAT-010921-559
Synonyms: "presumptive central nervous system" RELATED [ZFA:0000131]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0016879(future central nervous system)
develops_from:UBERON:0003075(neural plate)



Children

develops from:UBERON:0005068 (neural rod)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007135 (neural keel), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
9.5e-145FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_bffd4f182e02d689193ddda4f549174fp2@RFX4
9.5e-145FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_bffd4f182e02d689193ddda4f549174fp2@RFX4
4.41e-144FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_21005c1e01cc5f58b6f3be7fd1197abfp@chr5:87439352..87439386, -
4.41e-144FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_21005c1e01cc5f58b6f3be7fd1197abfp@chr5:87439352..87439386, -
5.06e-144FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_693db407439df7503c3d820ccaad35b9p1@ENST00000412957
5.06e-144FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_693db407439df7503c3d820ccaad35b9p1@ENST00000412957
1.1e-143FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_5f38ddf1249facd42a1853554cb24d10p3@CTNND2
1.1e-143FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_5f38ddf1249facd42a1853554cb24d10p3@CTNND2
1.17e-142FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_3290ca89b1b5f52d91218a97f2d92bcbp2@GABRG1
1.17e-142FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_3290ca89b1b5f52d91218a97f2d92bcbp2@GABRG1
2.68e-142FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_caa93f8a4566e805b3619a240b6aaec1p3@NRXN1
2.68e-142FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_caa93f8a4566e805b3619a240b6aaec1p3@NRXN1
1.04e-141FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_51d01800233364ec9a4b40b1e9536907p4@APC
1.04e-141FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_51d01800233364ec9a4b40b1e9536907p4@APC
1.18e-141FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_58ad8d60cf6ea71ac9a275872bda2b1bp8@CTNND2
1.18e-141FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_58ad8d60cf6ea71ac9a275872bda2b1bp8@CTNND2
7.98e-141FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_e9b0a2f8065ac3970a9262d36925edcdp7@DTNA
7.98e-141FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_e9b0a2f8065ac3970a9262d36925edcdp7@DTNA
1.0e-140FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_dae26830ca3e46428640ebdc6a1ddfbbp2@KCNJ16
1.0e-140FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_dae26830ca3e46428640ebdc6a1ddfbbp2@KCNJ16
2.58e-140FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_e00075e305e9b5f420987510bd63b2e9p@chr5:146314142..146314146, -
2.58e-140FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_e00075e305e9b5f420987510bd63b2e9-, p@chr5:146314142..146314146
1.46e-139FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_ddbe50a2ec047fb0e3c9cad3bad6640fp1@RFX4
1.46e-139FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_ddbe50a2ec047fb0e3c9cad3bad6640fp1@RFX4
9.16e-139FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_cb6587cb63b1f33f9037eb2e24977117p4@RFX4
9.16e-139FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_cb6587cb63b1f33f9037eb2e24977117p4@RFX4
1.47e-138FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_dd1872ec29a5e3641ccbde152d05be89p9@PRKACB
1.47e-138FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_dd1872ec29a5e3641ccbde152d05be89p9@PRKACB
4.62e-138FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_e29598b76d16e503fb894adf8e7f6450p2@CTNND2
4.62e-138FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_e29598b76d16e503fb894adf8e7f6450p2@CTNND2
1.71e-137FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_4d6819f12a8c76f9923466deb79dac99p@chr15:46702499..46702523, +
1.71e-137FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_4d6819f12a8c76f9923466deb79dac99p@chr15:46702499..46702523, +
5.75e-137FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_adc6a5a57fc37a2a5e89961b00a3bc12p17@PRKACB
5.75e-137FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_adc6a5a57fc37a2a5e89961b00a3bc12p17@PRKACB
6.55e-137FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_e0ec2b8ba8cb3baefae9362a21505788p17@NTRK2
6.55e-137FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_e0ec2b8ba8cb3baefae9362a21505788p17@NTRK2
8.93e-137FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_98d6f26b7c1c638c756b04ea374ac4cf+, p@chr6:80131670..80131724
8.93e-137FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_98d6f26b7c1c638c756b04ea374ac4cfp@chr6:80131670..80131724, +
2.51e-136FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_3bf61b04f4489ae76bd4030176bcbdecp4@SLC1A2
2.51e-136FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_3bf61b04f4489ae76bd4030176bcbdecp4@SLC1A2
2.84e-136FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_5be704c9be28b9e8de715ed2003b1af9p1@ATP10B
2.84e-136FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_5be704c9be28b9e8de715ed2003b1af9p1@ATP10B
3.14e-136FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_6489f09240679bbec8ec39b8532e2c5ep8@PRKCZ
3.14e-136FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_6489f09240679bbec8ec39b8532e2c5ep8@PRKCZ
4.26e-136FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_516e050e4b45889383a650e336c812a0p9@GPM6B
4.26e-136FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_516e050e4b45889383a650e336c812a0p9@GPM6B
5.24e-136FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_570347cc3dcf2ce126edaa201eacb288p5@AQP4
5.24e-136FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_570347cc3dcf2ce126edaa201eacb288p5@AQP4
5.54e-136FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_30fb6a9cde45d25b9a685d6056e30aeap1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
5.54e-136FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_30fb6a9cde45d25b9a685d6056e30aeap1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
9.78e-136FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_a8e81832de33af1b1a7b113d2f390ab5p8@DST
9.78e-136FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_a8e81832de33af1b1a7b113d2f390ab5p8@DST
1.52e-135FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_d1a97148f2eb4cc980c6ef384310084d-, p@chr7:47420733..47420758
1.52e-135FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_d1a97148f2eb4cc980c6ef384310084d-, p@chr7:47420733..47420758
2.32e-135FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_962f8a43cd6ff43125c28e8ee151dad2p1@ANKFN1
2.32e-135FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_962f8a43cd6ff43125c28e8ee151dad2p1@ANKFN1
3.21e-135FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_10cce8f59166f7d04f8df7333af97b91p1@GABRG1
3.21e-135FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_10cce8f59166f7d04f8df7333af97b91p1@GABRG1
5.25e-135FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_bcd156b85315bf816f1b02030c11a391p@chr17:7558857..7558903, +
5.25e-135FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_bcd156b85315bf816f1b02030c11a391p@chr17:7558857..7558903, +
8.03e-135FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_92b41ac5891df890f33ea003bb69d9a2p3@SFXN5
8.03e-135FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_92b41ac5891df890f33ea003bb69d9a2p3@SFXN5
1.91e-134FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_0c196394ee5e3a3f00f83d87c549cda0p3@GABRG1
1.91e-134FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_0c196394ee5e3a3f00f83d87c549cda0p3@GABRG1
2.97e-134FFCP PHASE1:Hg19::chr18:32398400..32398416,+#_f99f6cda93dec161a9017b132aef16e8p10@DTNA
2.97e-134FFCP PHASE2:Hg19::chr18:32398400..32398416,+#_f99f6cda93dec161a9017b132aef16e8p10@DTNA
4.25e-134FFCP PHASE2:Hg19::chr18:32398372..32398394,+#_6a58df10971dd44f101ccf25950b65c3p5@DTNA
4.25e-134FFCP PHASE1:Hg19::chr18:32398372..32398394,+#_6a58df10971dd44f101ccf25950b65c3p5@DTNA
4.84e-134FFCP PHASE1:Hg19::chr17:42989121..42989166,-#_445ed09f8c474fcb72bf22064d6a00f8p7@GFAP
4.84e-134FFCP PHASE2:Hg19::chr17:42989121..42989166,-#_445ed09f8c474fcb72bf22064d6a00f8p7@GFAP
5.15e-134FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_a142d173e6c8defac22b1fdc6881f981p2@PAQR6
5.15e-134FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_a142d173e6c8defac22b1fdc6881f981p2@PAQR6
1.37e-133FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_d2ea5ff04f52fd32745186d2aa94c478p2@uc002fch.1
1.37e-133FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_d2ea5ff04f52fd32745186d2aa94c478p2@uc002fch.1
1.42e-133FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_c32266f8cbb4b92b26a297ecbb6cc1d2p2@SRCIN1
1.42e-133FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_c32266f8cbb4b92b26a297ecbb6cc1d2p2@SRCIN1
1.45e-133FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_803187be572c9d9a85e0a026c79780f2p4@ARHGEF26-AS1
1.45e-133FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_803187be572c9d9a85e0a026c79780f2p4@ARHGEF26-AS1
2.38e-133FFCP PHASE2:Hg19::chr12:41221684..41221704,+#_d3125a7a7ca9a9cb9327637723f78c32p5@CNTN1
2.38e-133FFCP PHASE1:Hg19::chr12:41221684..41221704,+#_d3125a7a7ca9a9cb9327637723f78c32p5@CNTN1
2.91e-133FFCP PHASE1:Hg19::chr5:11384929..11384947,-#_9e0e56ef56fba52bf21b7d3ae2e598e4p15@CTNND2
2.91e-133FFCP PHASE2:Hg19::chr5:11384929..11384947,-#_9e0e56ef56fba52bf21b7d3ae2e598e4p15@CTNND2
3.31e-133FFCP PHASE2:Hg19::chr12:57980138..57980165,+#_2b7e46966881d107a7fd7703d2f72615p3@KIF5A
3.31e-133FFCP PHASE1:Hg19::chr12:57980138..57980165,+#_2b7e46966881d107a7fd7703d2f72615p3@KIF5A
3.45e-133FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_cf96514840eb082016365407af75941dp1@GPR61
3.45e-133FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_cf96514840eb082016365407af75941dp1@GPR61
1.11e-132FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_da8b9e3d3cdf8b683567fbe8ef5d935ep5@NKAIN3
1.11e-132FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_da8b9e3d3cdf8b683567fbe8ef5d935ep5@NKAIN3
1.25e-132FFCP PHASE1:Hg19::chr15:30261066..30261096,-#_2d66abc001938cc8d67e262bf2c8914ep12@TJP1
1.25e-132FFCP PHASE2:Hg19::chr15:30261066..30261096,-#_2d66abc001938cc8d67e262bf2c8914ep12@TJP1
1.94e-132FFCP PHASE1:Hg19::chr17:7560542..7560578,+#_622796955bd15fcfbcfa2e57289b14bep4@ATP1B2
1.94e-132FFCP PHASE2:Hg19::chr17:7560542..7560578,+#_622796955bd15fcfbcfa2e57289b14bep4@ATP1B2
2.17e-132FFCP PHASE1:Hg19::chr7:29519599..29519612,+#_3423642c280338ac3563ff3f37eda4e7p9@CHN2
2.17e-132FFCP PHASE2:Hg19::chr7:29519599..29519612,+#_3423642c280338ac3563ff3f37eda4e7p9@CHN2
2.85e-132FFCP PHASE1:Hg19::chr12:102060112..102060135,+#_f14d1ea5b8d32fd768d0bef2b2d496e7p4@MYBPC1
2.85e-132FFCP PHASE2:Hg19::chr12:102060112..102060135,+#_f14d1ea5b8d32fd768d0bef2b2d496e7p4@MYBPC1
3.19e-132FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_b6c2ef80a430be14cc564438425e64a5p1@LOC100289347
3.19e-132FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_b6c2ef80a430be14cc564438425e64a5p1@LOC100289347
4.04e-132FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_ab410c798a12924aee51cc9a981b94c5p9@MAP2
4.04e-132FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_ab410c798a12924aee51cc9a981b94c5p9@MAP2










Property "Property value" (as page type) with input value "UBPROP:0000001 "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0007135&oldid=3277882"