Personal tools

UBERON:0005290

From FANTOM5_SSTAR

Jump to: navigation, search

Name:myelencephalon
Namespace:FANTOM
Definition:"The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon]
Xrefs:
links:

BTO:0000758
EHDAA2:0001207
EHDAA:5526
EMAPA:17082
[1]
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000205

VHOG:0000456
Comments:the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004733(segmental subdivision of hindbrain)
develops_from:UBERON:0010096(future myelencephalon)
part_of:UBERON:0002028(hindbrain)



Children

part of:UBERON:0001896 (medulla oblongata)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005290 (myelencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr5:35090057..35090065,-#_c356ba0b25e7a1bcc832ca0b35834fd3p27@PRLR
8.98e-131FFCP PHASE2:Hg19::chr2:8851401..8851408,+#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr2:8851401..8851408, +
8.98e-131FFCP PHASE1:Hg19::chr6:132580699..132580702,+#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr6:132580699..132580702, +
8.98e-131FFCP PHASE1:Hg19::chr5:35090057..35090065,-#_c356ba0b25e7a1bcc832ca0b35834fd3p27@PRLR
8.98e-131FFCP PHASE2:Hg19::chr5:35090318..35090324,-#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr5:35090318..35090324, -
8.98e-131FFCP PHASE1:Hg19::chr2:8851401..8851408,+#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr2:8851401..8851408, +
8.98e-131FFCP PHASE1:Hg19::chr12:44467410..44467418,+#_c356ba0b25e7a1bcc832ca0b35834fd3p13@TMEM117
8.98e-131FFCP PHASE1:Hg19::chr5:35090318..35090324,-#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr5:35090318..35090324, -
8.98e-131FFCP PHASE2:Hg19::chr12:44467410..44467418,+#_c356ba0b25e7a1bcc832ca0b35834fd3p13@TMEM117
8.98e-131FFCP PHASE2:Hg19::chr6:132580699..132580702,+#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr6:132580699..132580702, +
5.2e-118FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_930d92965e4d5335a8d2e3c800cbdf1dp@chr11:114146042..114146050, -
5.2e-118FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_930d92965e4d5335a8d2e3c800cbdf1dp@chr11:114146042..114146050, -
5.2e-118FFCP PHASE2:Hg19::chr8:12803146..12803155,+#_930d92965e4d5335a8d2e3c800cbdf1dp17@KIAA1456
5.2e-118FFCP PHASE1:Hg19::chr8:12803146..12803155,+#_930d92965e4d5335a8d2e3c800cbdf1dp17@KIAA1456
5.69e-99FFCP PHASE2:Hg19::chr5:35090259..35090267,-#_59f7728759861dfa488f6c3d05791869p12@PRLR
5.69e-99FFCP PHASE2:Hg19::chr7:129015906..129015915,+#_59f7728759861dfa488f6c3d05791869p@chr7:129015906..129015915, +
5.69e-99FFCP PHASE1:Hg19::chr5:35090259..35090267,-#_59f7728759861dfa488f6c3d05791869p12@PRLR
5.69e-99FFCP PHASE1:Hg19::chr7:129015906..129015915,+#_59f7728759861dfa488f6c3d05791869p@chr7:129015906..129015915, +
7.95e-99FFCP PHASE1:Hg19::chr7:129027894..129027906,+#_6110de3067f7b86e1feee04141435711p16@AHCYL2
7.95e-99FFCP PHASE2:Hg19::chr7:129027894..129027906,+#_6110de3067f7b86e1feee04141435711p16@AHCYL2
1.55e-98FFCP PHASE1:Hg19::chr8:37561236..37561245,+#_9843d49bec16649a632c469842ac713dp@chr8:37561236..37561245, +
1.55e-98FFCP PHASE2:Hg19::chr8:37561236..37561245,+#_9843d49bec16649a632c469842ac713dp@chr8:37561236..37561245, +
6.24e-88FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr7:129012882..129012891, -
6.24e-88FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_6bebf02ee4f5c0b7643e522c1f6740d0p20@PRLR
6.24e-88FFCP PHASE1:Hg19::chr12:20951599..20951604,+#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr12:20951599..20951604, +
6.24e-88FFCP PHASE1:Hg19::chr15:40492238..40492270,+#_6bebf02ee4f5c0b7643e522c1f6740d0p8@BUB1B
6.24e-88FFCP PHASE1:Hg19::chr12:44467399..44467407,+#_6bebf02ee4f5c0b7643e522c1f6740d0p12@TMEM117
6.24e-88FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_6bebf02ee4f5c0b7643e522c1f6740d0p26@PRLR
6.24e-88FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr7:129015806..129015815, +
6.24e-88FFCP PHASE2:Hg19::chr15:40492238..40492270,+#_6bebf02ee4f5c0b7643e522c1f6740d0p8@BUB1B
6.24e-88FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr7:129012882..129012891, -
6.24e-88FFCP PHASE2:Hg19::chr12:20951599..20951604,+#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr12:20951599..20951604, +
6.24e-88FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_6bebf02ee4f5c0b7643e522c1f6740d0p20@PRLR
6.24e-88FFCP PHASE1:Hg19::chr12:129304411..129304414,-#_6bebf02ee4f5c0b7643e522c1f6740d0p11@SLC15A4
6.24e-88FFCP PHASE2:Hg19::chr11:119216846..119216857,-#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr11:119216846..119216857, -
6.24e-88FFCP PHASE2:Hg19::chr12:44467399..44467407,+#_6bebf02ee4f5c0b7643e522c1f6740d0p12@TMEM117
6.24e-88FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr7:129015806..129015815, +
6.24e-88FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_6bebf02ee4f5c0b7643e522c1f6740d0p26@PRLR
6.24e-88FFCP PHASE2:Hg19::chr12:129304411..129304414,-#_6bebf02ee4f5c0b7643e522c1f6740d0p11@SLC15A4
6.24e-88FFCP PHASE1:Hg19::chr11:119216846..119216857,-#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr11:119216846..119216857, -
9.74e-88FFCP PHASE2:Hg19::chr8:12803139..12803144,+#_88f5d7cce7b16745d120c6ebe31aedcbp23@KIAA1456
9.74e-88FFCP PHASE1:Hg19::chr5:33514132..33514156,+#_88f5d7cce7b16745d120c6ebe31aedcbp@chr5:33514132..33514156, +
9.74e-88FFCP PHASE1:Hg19::chr18:29172879..29172882,+#_88f5d7cce7b16745d120c6ebe31aedcbp5@TTR
9.74e-88FFCP PHASE1:Hg19::chr11:71869850..71869861,+#_88f5d7cce7b16745d120c6ebe31aedcbp1@ENST00000544535
9.74e-88FFCP PHASE2:Hg19::chr18:29172879..29172882,+#_88f5d7cce7b16745d120c6ebe31aedcbp5@TTR
9.74e-88FFCP PHASE1:Hg19::chr8:12803139..12803144,+#_88f5d7cce7b16745d120c6ebe31aedcbp23@KIAA1456
9.74e-88FFCP PHASE2:Hg19::chr5:33514132..33514156,+#_88f5d7cce7b16745d120c6ebe31aedcbp@chr5:33514132..33514156, +
9.74e-88FFCP PHASE2:Hg19::chr11:71869850..71869861,+#_88f5d7cce7b16745d120c6ebe31aedcbp1@ENST00000544535
1.52e-87FFCP PHASE2:Hg19::chr11:111191106..111191110,+#_0d88a681a319ada6c7d43ef95056ae0dp@chr11:111191106..111191110, +
1.52e-87FFCP PHASE1:Hg19::chr5:126959224..126959239,+#_0d88a681a319ada6c7d43ef95056ae0dp@chr5:126959224..126959239, +
1.52e-87FFCP PHASE1:Hg19::chr16:49670005..49670020,-#_0d88a681a319ada6c7d43ef95056ae0dp@chr16:49670005..49670020, -
1.52e-87FFCP PHASE1:Hg19::chr11:111191106..111191110,+#_0d88a681a319ada6c7d43ef95056ae0dp@chr11:111191106..111191110, +
1.52e-87FFCP PHASE2:Hg19::chr16:49670005..49670020,-#_0d88a681a319ada6c7d43ef95056ae0dp@chr16:49670005..49670020, -
1.52e-87FFCP PHASE2:Hg19::chr5:126959224..126959239,+#_0d88a681a319ada6c7d43ef95056ae0dp@chr5:126959224..126959239, +
1.52e-87FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_0d88a681a319ada6c7d43ef95056ae0dp5@C10orf105
1.52e-87FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_0d88a681a319ada6c7d43ef95056ae0dp5@C10orf105
5.41e-85FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_352b69ffa04e5eebe1aeba315eb4ee1fp@chr2:69741832..69741847, -
5.41e-85FFCP PHASE1:Hg19::chr10:73479546..73479553,-#_352b69ffa04e5eebe1aeba315eb4ee1fp4@C10orf105
5.41e-85FFCP PHASE2:Hg19::chr10:73479546..73479553,-#_352b69ffa04e5eebe1aeba315eb4ee1fp4@C10orf105
5.41e-85FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_352b69ffa04e5eebe1aeba315eb4ee1fp@chr2:69741832..69741847, -
7.21e-85FFCP PHASE1:Hg19::chr5:150050170..150050182,+#_be4836a8addce356f8e517bd69a3ae53p@chr5:150050170..150050182, +
7.21e-85FFCP PHASE2:Hg19::chr5:150050170..150050182,+#_be4836a8addce356f8e517bd69a3ae53p@chr5:150050170..150050182, +
2.27e-84FFCP PHASE2:Hg19::chr15:99666457..99666462,+#_4fc991c20ede230eac5df8dc6d8a7a86p@chr15:99666457..99666462, +
2.27e-84FFCP PHASE1:Hg19::chr15:99666457..99666462,+#_4fc991c20ede230eac5df8dc6d8a7a86p@chr15:99666457..99666462, +
3.03e-84FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_aafb9ae797c27641f42feba0cdbb0c07p@chr17:42993851..42993858, -
3.03e-84FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_aafb9ae797c27641f42feba0cdbb0c07p@chr17:42993851..42993858, -
4.03e-84FFCP PHASE1:Hg19::chr17:65489258..65489261,-#_95688d020c318aeec09b12e2adc32f17p@chr17:65489258..65489261, -
4.03e-84FFCP PHASE2:Hg19::chr17:65489258..65489261,-#_95688d020c318aeec09b12e2adc32f17p@chr17:65489258..65489261, -
1.66e-74FFCP PHASE2:Hg19::chr10:18242120..18242136,+#_f7abed2d9a0275b103aa26215cc05ee9p4@SLC39A12
1.66e-74FFCP PHASE1:Hg19::chr10:18242120..18242136,+#_f7abed2d9a0275b103aa26215cc05ee9p4@SLC39A12
2.14e-74FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_de0815caeda648424d62ffc6662b3883p@chr9:128998376..128998387, -
2.14e-74FFCP PHASE2:Hg19::chr12:47779637..47779662,-#_de0815caeda648424d62ffc6662b3883p@chr12:47779637..47779662, -
2.14e-74FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_de0815caeda648424d62ffc6662b3883p@chr9:128998376..128998387, -
2.14e-74FFCP PHASE1:Hg19::chr12:47779637..47779662,-#_de0815caeda648424d62ffc6662b3883p@chr12:47779637..47779662, -
7.51e-74FFCP PHASE2:Hg19::chr6:151054854..151054865,+#_4c7691958e705f5e8f7b6897d7ae4130p17@PLEKHG1
7.51e-74FFCP PHASE1:Hg19::chr6:151054854..151054865,+#_4c7691958e705f5e8f7b6897d7ae4130p17@PLEKHG1
9.82e-67FFCP PHASE2:Hg19::chr7:129015671..129015685,+#_142862fa4faf872dd86a0d6edc4efd0ap11@AHCYL2
9.82e-67FFCP PHASE1:Hg19::chr7:129015671..129015685,+#_142862fa4faf872dd86a0d6edc4efd0ap11@AHCYL2
9.82e-67FFCP PHASE2:Hg19::chr5:35089843..35089860,-#_142862fa4faf872dd86a0d6edc4efd0ap7@PRLR
9.82e-67FFCP PHASE1:Hg19::chr5:35089843..35089860,-#_142862fa4faf872dd86a0d6edc4efd0ap7@PRLR
1.71e-66FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_0e49b837d581d608b64b84632dd5fba9p@chr9:20927844..20927855, +
1.71e-66FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_0e49b837d581d608b64b84632dd5fba9p@chr9:20927844..20927855, +
1.92e-66FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_dc68046df81859f1b143b76aebffa6e0p1@SLC6A5
1.92e-66FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_dc68046df81859f1b143b76aebffa6e0p1@SLC6A5
2.39e-66FFCP PHASE2:Hg19::chr9:5954514..5954521,-#_4ea94e99de2bb4a38c23d944329c0268p18@KIAA2026
2.39e-66FFCP PHASE1:Hg19::chr7:129015616..129015619,+#_4ea94e99de2bb4a38c23d944329c0268p38@AHCYL2
2.39e-66FFCP PHASE1:Hg19::chr9:5954514..5954521,-#_4ea94e99de2bb4a38c23d944329c0268p18@KIAA2026
2.39e-66FFCP PHASE2:Hg19::chr7:129015511..129015519,+#_4ea94e99de2bb4a38c23d944329c0268p30@AHCYL2
2.39e-66FFCP PHASE1:Hg19::chr7:129015511..129015519,+#_4ea94e99de2bb4a38c23d944329c0268p30@AHCYL2
2.39e-66FFCP PHASE2:Hg19::chr7:129015616..129015619,+#_4ea94e99de2bb4a38c23d944329c0268p38@AHCYL2
2.4e-66FFCP PHASE2:Hg19::chr3:59750150..59750155,-#_b4f6ed56a8a1d0b8a5605688d981931ap@chr3:59750150..59750155, -
2.4e-66FFCP PHASE2:Hg19::chr7:150529074..150529076,+#_b4f6ed56a8a1d0b8a5605688d981931ap@chr7:150529074..150529076, +
2.4e-66FFCP PHASE1:Hg19::chr3:59750150..59750155,-#_b4f6ed56a8a1d0b8a5605688d981931ap@chr3:59750150..59750155, -
2.4e-66FFCP PHASE1:Hg19::chr17:48913152..48913158,+#_b4f6ed56a8a1d0b8a5605688d981931ap9@WFIKKN2
2.4e-66FFCP PHASE1:Hg19::chr7:150529074..150529076,+#_b4f6ed56a8a1d0b8a5605688d981931ap@chr7:150529074..150529076, +
2.4e-66FFCP PHASE2:Hg19::chr17:48913152..48913158,+#_b4f6ed56a8a1d0b8a5605688d981931ap9@WFIKKN2
2.41e-66FFCP PHASE1:Hg19::chr10:97236225..97236232,-#_b91b7504c9eb6307e8cea6fdc73c1d55p@chr10:97236225..97236232, -
2.41e-66FFCP PHASE2:Hg19::chr10:97236225..97236232,-#_b91b7504c9eb6307e8cea6fdc73c1d55p@chr10:97236225..97236232, -
3.35e-66FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_8687afae4c4d3af30a943b3e92797d3fp@chr3:10706167..10706179, -
3.35e-66FFCP PHASE2:Hg19::chr3:125997081..125997085,+#_8687afae4c4d3af30a943b3e92797d3fp@chr3:125997081..125997085, +