UBERON:0001896
From FANTOM5_SSTAR
Name: | medulla oblongata | ||
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Namespace: | FANTOM | ||
Definition: | "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata] | ||
Xrefs: |
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Synonyms: |
"bulb" BROAD [] "bulbus" EXACT [FMA:62004, FMA:TA] "medulla" BROAD [ABA:MY] "medulla oblonzata" RELATED LATIN [Wikipedia:Medulla_oblongata] "metepencephalon" RELATED [FMA:62004] | ||
Alt_id: | UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
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part_of: | UBERON:0002028(hindbrain),UBERON:0002298(brainstem),UBERON:0005290(myelencephalon) |
Children
is a: | FF:10361-105F1 (medulla oblongata, newborn, donor10223) |
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derives from: | FF:0010038 (human medulla oblongata - adult sample),FF:0011284 (mouse medulla oblongata- adult sample),FF:0011465 (mouse medulla oblongata- neonate N30 sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 1396-42A3 (medulla oblongata, neonate N30)
- 17-12C2 (medulla oblongata, adult)
Mouse (Mus musculus)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 1396-42A3 (medulla oblongata, neonate N30)
- 17-12C2 (medulla oblongata, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001896 (medulla oblongata), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
8.98e-131 | FFCP PHASE1:Hg19::chr5:35090057..35090065,-#_68c3e983765014266873215ef9f2974a | p27@PRLR |
8.98e-131 | FFCP PHASE1:Hg19::chr6:132580699..132580702,+#_68c3e983765014266873215ef9f2974a | p@chr6:132580699..132580702, + |
8.98e-131 | FFCP PHASE2:Hg19::chr5:35090057..35090065,-#_68c3e983765014266873215ef9f2974a | p27@PRLR |
8.98e-131 | FFCP PHASE2:Hg19::chr6:132580699..132580702,+#_68c3e983765014266873215ef9f2974a | p@chr6:132580699..132580702, + |
8.98e-131 | FFCP PHASE2:Hg19::chr12:44467410..44467418,+#_68c3e983765014266873215ef9f2974a | p13@TMEM117 |
8.98e-131 | FFCP PHASE1:Hg19::chr2:8851401..8851408,+#_68c3e983765014266873215ef9f2974a | p@chr2:8851401..8851408, + |
8.98e-131 | FFCP PHASE1:Hg19::chr5:35090318..35090324,-#_68c3e983765014266873215ef9f2974a | p@chr5:35090318..35090324, - |
8.98e-131 | FFCP PHASE2:Hg19::chr2:8851401..8851408,+#_68c3e983765014266873215ef9f2974a | p@chr2:8851401..8851408, + |
8.98e-131 | FFCP PHASE2:Hg19::chr5:35090318..35090324,-#_68c3e983765014266873215ef9f2974a | p@chr5:35090318..35090324, - |
8.98e-131 | FFCP PHASE1:Hg19::chr12:44467410..44467418,+#_68c3e983765014266873215ef9f2974a | p13@TMEM117 |
5.2e-118 | FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_186f65f65aa00cbd80c7e67372831ac6 | p@chr11:114146042..114146050, - |
5.2e-118 | FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_186f65f65aa00cbd80c7e67372831ac6 | p@chr11:114146042..114146050, - |
5.2e-118 | FFCP PHASE1:Hg19::chr8:12803146..12803155,+#_186f65f65aa00cbd80c7e67372831ac6 | p17@KIAA1456 |
5.2e-118 | FFCP PHASE2:Hg19::chr8:12803146..12803155,+#_186f65f65aa00cbd80c7e67372831ac6 | p17@KIAA1456 |
5.69e-99 | FFCP PHASE1:Hg19::chr7:129015906..129015915,+#_a7ed9df5bdde6b712291defad845530d | p@chr7:129015906..129015915, + |
5.69e-99 | FFCP PHASE2:Hg19::chr7:129015906..129015915,+#_a7ed9df5bdde6b712291defad845530d | p@chr7:129015906..129015915, + |
5.69e-99 | FFCP PHASE1:Hg19::chr5:35090259..35090267,-#_a7ed9df5bdde6b712291defad845530d | p12@PRLR |
5.69e-99 | FFCP PHASE2:Hg19::chr5:35090259..35090267,-#_a7ed9df5bdde6b712291defad845530d | p12@PRLR |
7.95e-99 | FFCP PHASE1:Hg19::chr7:129027894..129027906,+#_c9053c77dbf3bb4c2497ee775605383a | p16@AHCYL2 |
7.95e-99 | FFCP PHASE2:Hg19::chr7:129027894..129027906,+#_c9053c77dbf3bb4c2497ee775605383a | p16@AHCYL2 |
1.55e-98 | FFCP PHASE2:Hg19::chr8:37561236..37561245,+#_c4bfa268b9ff0ac0b1618f9f176c0316 | p@chr8:37561236..37561245, + |
1.55e-98 | FFCP PHASE1:Hg19::chr8:37561236..37561245,+#_c4bfa268b9ff0ac0b1618f9f176c0316 | p@chr8:37561236..37561245, + |
6.24e-88 | FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_5a5321b3923df58e622e2ffe862f37a8 | p@chr7:129015806..129015815, + |
6.24e-88 | FFCP PHASE2:Hg19::chr12:44467399..44467407,+#_5a5321b3923df58e622e2ffe862f37a8 | p12@TMEM117 |
6.24e-88 | FFCP PHASE2:Hg19::chr15:40492238..40492270,+#_5a5321b3923df58e622e2ffe862f37a8 | p8@BUB1B |
6.24e-88 | FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_5a5321b3923df58e622e2ffe862f37a8 | p20@PRLR |
6.24e-88 | FFCP PHASE1:Hg19::chr12:20951599..20951604,+#_5a5321b3923df58e622e2ffe862f37a8 | p@chr12:20951599..20951604, + |
6.24e-88 | FFCP PHASE2:Hg19::chr12:129304411..129304414,-#_5a5321b3923df58e622e2ffe862f37a8 | p11@SLC15A4 |
6.24e-88 | FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_5a5321b3923df58e622e2ffe862f37a8 | p20@PRLR |
6.24e-88 | FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_5a5321b3923df58e622e2ffe862f37a8 | p26@PRLR |
6.24e-88 | FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_5a5321b3923df58e622e2ffe862f37a8 | p@chr7:129012882..129012891, - |
6.24e-88 | FFCP PHASE1:Hg19::chr12:44467399..44467407,+#_5a5321b3923df58e622e2ffe862f37a8 | p12@TMEM117 |
6.24e-88 | FFCP PHASE2:Hg19::chr11:119216846..119216857,-#_5a5321b3923df58e622e2ffe862f37a8 | p@chr11:119216846..119216857, - |
6.24e-88 | FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_5a5321b3923df58e622e2ffe862f37a8 | p26@PRLR |
6.24e-88 | FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_5a5321b3923df58e622e2ffe862f37a8 | p@chr7:129012882..129012891, - |
6.24e-88 | FFCP PHASE1:Hg19::chr11:119216846..119216857,-#_5a5321b3923df58e622e2ffe862f37a8 | p@chr11:119216846..119216857, - |
6.24e-88 | FFCP PHASE1:Hg19::chr12:129304411..129304414,-#_5a5321b3923df58e622e2ffe862f37a8 | p11@SLC15A4 |
6.24e-88 | FFCP PHASE2:Hg19::chr12:20951599..20951604,+#_5a5321b3923df58e622e2ffe862f37a8 | p@chr12:20951599..20951604, + |
6.24e-88 | FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_5a5321b3923df58e622e2ffe862f37a8 | p@chr7:129015806..129015815, + |
6.24e-88 | FFCP PHASE1:Hg19::chr15:40492238..40492270,+#_5a5321b3923df58e622e2ffe862f37a8 | p8@BUB1B |
9.74e-88 | FFCP PHASE1:Hg19::chr5:33514132..33514156,+#_958def1af071bf3d3cb57b3e0c098bc7 | p@chr5:33514132..33514156, + |
9.74e-88 | FFCP PHASE1:Hg19::chr8:12803139..12803144,+#_958def1af071bf3d3cb57b3e0c098bc7 | p23@KIAA1456 |
9.74e-88 | FFCP PHASE2:Hg19::chr8:12803139..12803144,+#_958def1af071bf3d3cb57b3e0c098bc7 | p23@KIAA1456 |
9.74e-88 | FFCP PHASE2:Hg19::chr5:33514132..33514156,+#_958def1af071bf3d3cb57b3e0c098bc7 | p@chr5:33514132..33514156, + |
9.74e-88 | FFCP PHASE2:Hg19::chr11:71869850..71869861,+#_958def1af071bf3d3cb57b3e0c098bc7 | p1@ENST00000544535 |
9.74e-88 | FFCP PHASE1:Hg19::chr11:71869850..71869861,+#_958def1af071bf3d3cb57b3e0c098bc7 | p1@ENST00000544535 |
9.74e-88 | FFCP PHASE1:Hg19::chr18:29172879..29172882,+#_958def1af071bf3d3cb57b3e0c098bc7 | p5@TTR |
9.74e-88 | FFCP PHASE2:Hg19::chr18:29172879..29172882,+#_958def1af071bf3d3cb57b3e0c098bc7 | p5@TTR |
1.52e-87 | FFCP PHASE2:Hg19::chr5:126959224..126959239,+#_0c9924a32c250f1849968fe3aa9eb1f3 | p@chr5:126959224..126959239, + |
1.52e-87 | FFCP PHASE2:Hg19::chr11:111191106..111191110,+#_0c9924a32c250f1849968fe3aa9eb1f3 | p@chr11:111191106..111191110, + |
1.52e-87 | FFCP PHASE1:Hg19::chr11:111191106..111191110,+#_0c9924a32c250f1849968fe3aa9eb1f3 | p@chr11:111191106..111191110, + |
1.52e-87 | FFCP PHASE1:Hg19::chr16:49670005..49670020,-#_0c9924a32c250f1849968fe3aa9eb1f3 | p@chr16:49670005..49670020, - |
1.52e-87 | FFCP PHASE1:Hg19::chr5:126959224..126959239,+#_0c9924a32c250f1849968fe3aa9eb1f3 | p@chr5:126959224..126959239, + |
1.52e-87 | FFCP PHASE2:Hg19::chr16:49670005..49670020,-#_0c9924a32c250f1849968fe3aa9eb1f3 | p@chr16:49670005..49670020, - |
1.52e-87 | FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_0c9924a32c250f1849968fe3aa9eb1f3 | p5@C10orf105 |
1.52e-87 | FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_0c9924a32c250f1849968fe3aa9eb1f3 | p5@C10orf105 |
5.41e-85 | FFCP PHASE1:Hg19::chr10:73479546..73479553,-#_bf4f8ad227fc47dc5891f8ad275fe075 | p4@C10orf105 |
5.41e-85 | FFCP PHASE2:Hg19::chr10:73479546..73479553,-#_bf4f8ad227fc47dc5891f8ad275fe075 | p4@C10orf105 |
5.41e-85 | FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_bf4f8ad227fc47dc5891f8ad275fe075 | p@chr2:69741832..69741847, - |
5.41e-85 | FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_bf4f8ad227fc47dc5891f8ad275fe075 | p@chr2:69741832..69741847, - |
7.21e-85 | FFCP PHASE1:Hg19::chr5:150050170..150050182,+#_b4bdbe9d367fa2817a88b2a552ab8de2 | p@chr5:150050170..150050182, + |
7.21e-85 | FFCP PHASE2:Hg19::chr5:150050170..150050182,+#_b4bdbe9d367fa2817a88b2a552ab8de2 | p@chr5:150050170..150050182, + |
2.27e-84 | FFCP PHASE2:Hg19::chr15:99666457..99666462,+#_ce0e50efc20a92076a03ef5db91bf5f6 | p@chr15:99666457..99666462, + |
2.27e-84 | FFCP PHASE1:Hg19::chr15:99666457..99666462,+#_ce0e50efc20a92076a03ef5db91bf5f6 | p@chr15:99666457..99666462, + |
3.03e-84 | FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_962b3ca5ef8f94e59527ef74eb8c1bc3 | p@chr17:42993851..42993858, - |
3.03e-84 | FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_962b3ca5ef8f94e59527ef74eb8c1bc3 | p@chr17:42993851..42993858, - |
4.03e-84 | FFCP PHASE1:Hg19::chr17:65489258..65489261,-#_a6f292714c3230ce3a101e7f6dbca2a5 | p@chr17:65489258..65489261, - |
4.03e-84 | FFCP PHASE2:Hg19::chr17:65489258..65489261,-#_a6f292714c3230ce3a101e7f6dbca2a5 | p@chr17:65489258..65489261, - |
1.66e-74 | FFCP PHASE1:Hg19::chr10:18242120..18242136,+#_f32788d11c38c40374df11a7780271d8 | p4@SLC39A12 |
1.66e-74 | FFCP PHASE2:Hg19::chr10:18242120..18242136,+#_f32788d11c38c40374df11a7780271d8 | p4@SLC39A12 |
2.14e-74 | FFCP PHASE1:Hg19::chr12:47779637..47779662,-#_fb5896f223aa0da30588ae0503617cb8 | p@chr12:47779637..47779662, - |
2.14e-74 | FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_fb5896f223aa0da30588ae0503617cb8 | p@chr9:128998376..128998387, - |
2.14e-74 | FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_fb5896f223aa0da30588ae0503617cb8 | p@chr9:128998376..128998387, - |
2.14e-74 | FFCP PHASE2:Hg19::chr12:47779637..47779662,-#_fb5896f223aa0da30588ae0503617cb8 | p@chr12:47779637..47779662, - |
7.51e-74 | FFCP PHASE1:Hg19::chr6:151054854..151054865,+#_cde45bdffcc7ce78156f750348a5756b | p17@PLEKHG1 |
7.51e-74 | FFCP PHASE2:Hg19::chr6:151054854..151054865,+#_cde45bdffcc7ce78156f750348a5756b | p17@PLEKHG1 |
9.82e-67 | FFCP PHASE1:Hg19::chr7:129015671..129015685,+#_c5c9df535b4211af1045612322857c79 | p11@AHCYL2 |
9.82e-67 | FFCP PHASE1:Hg19::chr5:35089843..35089860,-#_c5c9df535b4211af1045612322857c79 | p7@PRLR |
9.82e-67 | FFCP PHASE2:Hg19::chr7:129015671..129015685,+#_c5c9df535b4211af1045612322857c79 | p11@AHCYL2 |
9.82e-67 | FFCP PHASE2:Hg19::chr5:35089843..35089860,-#_c5c9df535b4211af1045612322857c79 | p7@PRLR |
1.71e-66 | FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_f718344480f949c7f9a2b96000f62ea9 | p@chr9:20927844..20927855, + |
1.71e-66 | FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_f718344480f949c7f9a2b96000f62ea9 | p@chr9:20927844..20927855, + |
1.92e-66 | FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_7a267860ed1e359307780d303a636ccc | p1@SLC6A5 |
1.92e-66 | FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_7a267860ed1e359307780d303a636ccc | p1@SLC6A5 |
2.39e-66 | FFCP PHASE1:Hg19::chr9:5954514..5954521,-#_71ca6147e3aa3c37cbce10ec96d64b62 | p18@KIAA2026 |
2.39e-66 | FFCP PHASE1:Hg19::chr7:129015511..129015519,+#_71ca6147e3aa3c37cbce10ec96d64b62 | p30@AHCYL2 |
2.39e-66 | FFCP PHASE2:Hg19::chr9:5954514..5954521,-#_71ca6147e3aa3c37cbce10ec96d64b62 | p18@KIAA2026 |
2.39e-66 | FFCP PHASE2:Hg19::chr7:129015511..129015519,+#_71ca6147e3aa3c37cbce10ec96d64b62 | p30@AHCYL2 |
2.39e-66 | FFCP PHASE1:Hg19::chr7:129015616..129015619,+#_71ca6147e3aa3c37cbce10ec96d64b62 | p38@AHCYL2 |
2.39e-66 | FFCP PHASE2:Hg19::chr7:129015616..129015619,+#_71ca6147e3aa3c37cbce10ec96d64b62 | p38@AHCYL2 |
2.4e-66 | FFCP PHASE1:Hg19::chr7:150529074..150529076,+#_a4efbe9c9ddc1edcae172f5a662b834b | p@chr7:150529074..150529076, + |
2.4e-66 | FFCP PHASE1:Hg19::chr17:48913152..48913158,+#_a4efbe9c9ddc1edcae172f5a662b834b | p9@WFIKKN2 |
2.4e-66 | FFCP PHASE2:Hg19::chr7:150529074..150529076,+#_a4efbe9c9ddc1edcae172f5a662b834b | p@chr7:150529074..150529076, + |
2.4e-66 | FFCP PHASE2:Hg19::chr17:48913152..48913158,+#_a4efbe9c9ddc1edcae172f5a662b834b | p9@WFIKKN2 |
2.4e-66 | FFCP PHASE1:Hg19::chr3:59750150..59750155,-#_a4efbe9c9ddc1edcae172f5a662b834b | p@chr3:59750150..59750155, - |
2.4e-66 | FFCP PHASE2:Hg19::chr3:59750150..59750155,-#_a4efbe9c9ddc1edcae172f5a662b834b | p@chr3:59750150..59750155, - |
2.41e-66 | FFCP PHASE2:Hg19::chr10:97236225..97236232,-#_26053e81ab19c076fd1dcedc84dc55e2 | p@chr10:97236225..97236232, - |
2.41e-66 | FFCP PHASE1:Hg19::chr10:97236225..97236232,-#_26053e81ab19c076fd1dcedc84dc55e2 | p@chr10:97236225..97236232, - |
3.35e-66 | FFCP PHASE2:Hg19::chr3:125997081..125997085,+#_9c5274f834121ed99dd3af50dbeba805 | p@chr3:125997081..125997085, + |
3.35e-66 | FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_9c5274f834121ed99dd3af50dbeba805 | p@chr3:10706167..10706179, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.