UBERON:0005425
From FANTOM5_SSTAR
Name: | presumptive neural retina | ||
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Namespace: | FANTOM | ||
Definition: | "Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [ZFIN:curator] | ||
Xrefs: |
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Synonyms: |
"inner layer optic cup" EXACT [ZFA:0001071] "optic cup inner layer" EXACT [EHDAA2:0001304] "presumptive retinas" EXACT PLURAL [ZFA:0001071] | ||
Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0006598(presumptive structure),UBERON:0010312(immature eye) |
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part_of: | UBERON:0003072(optic cup) |
Children
develops from: | UBERON:0003902 (retinal neural layer) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005425 (presumptive neural retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
5.42e-195 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6c | p@chr12:57628762..57628773, - |
5.42e-195 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6c | p@chr12:57628762..57628773, - |
9.37e-99 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr18:25161980..25161984, - |
9.37e-99 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr7:15056365..15056368, - |
9.37e-99 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr18:25161980..25161984, - |
9.37e-99 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5 | p@chr7:15056365..15056368, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr5:33229308..33229311, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr5:58471631..58471634, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p7@TMEM88B |
2.55e-98 | FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p10@NELL1 |
2.55e-98 | FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr21:22483836..22483880, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr1:66713214..66713221, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr5:172318159..172318160, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr1:154942133..154942148, - |
2.55e-98 | FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p4@SNORD111B |
2.55e-98 | FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr4:139501766..139501798, - |
2.55e-98 | FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr9:79519652..79519664, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p1@ENST00000510391 |
2.55e-98 | FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p3@ENST00000558781 |
2.55e-98 | FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr12:72875355..72875358, + |
2.55e-98 | FFCP PHASE1:Hg19::chr12:296753..296755,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr12:296753..296755, - |
2.55e-98 | FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr7:73444812..73444816, + |
2.55e-98 | FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr19:20382476..20382481, - |
2.55e-98 | FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr3:27750995..27750997, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr3:39827273..39827281, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p3@BC098451 |
2.55e-98 | FFCP PHASE2:Hg19::chr8:130597061..130597068,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr8:130597061..130597068, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr14:85119696..85119699, + |
2.55e-98 | FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr10:22768515..22768517, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p10@ALK |
2.55e-98 | FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr18:45498690..45498695, - |
2.55e-98 | FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr7:88535666..88535671, + |
2.55e-98 | FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr16:51174920..51174928, - |
2.55e-98 | FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr16:55740953..55740956, + |
2.55e-98 | FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p12@C16orf62 |
2.55e-98 | FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr12:72875355..72875358, + |
2.55e-98 | FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr8:130597061..130597068, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr14:68589926..68589929, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr5:126962527..126962529, - |
2.55e-98 | FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr4:130221053..130221071, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr14:78718132..78718157, + |
2.55e-98 | FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chrX:25873187..25873209, + |
2.55e-98 | FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr21:22483836..22483880, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p2@ATAD3B |
2.55e-98 | FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr2:134472430..134472432, + |
2.55e-98 | FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr22:30951607..30951613, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr1:154942133..154942148, - |
2.55e-98 | FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr12:59444098..59444102, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr1:218214846..218214850, - |
2.55e-98 | FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr6:16317123..16317126, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr2:133035182..133035195, - |
2.55e-98 | FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p9@TCF25 |
2.55e-98 | FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p22@SOX2-OT |
2.55e-98 | FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr11:57030314..57030346, + |
2.55e-98 | FFCP PHASE1:Hg19::chr16:70563415..70563420,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p4@SNORD111B |
2.55e-98 | FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr5:58471631..58471634, + |
2.55e-98 | FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr15:36402459..36402465, - |
2.55e-98 | FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr16:66170755..66170759, - |
2.55e-98 | FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr10:118927879..118927891, + |
2.55e-98 | FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr9:79519652..79519664, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p1@ENST00000510391 |
2.55e-98 | FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr2:29484252..29484254, - |
2.55e-98 | FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr4:139590958..139590961, - |
2.55e-98 | FFCP PHASE2:Hg19::chr12:68567714..68567717,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr12:68567714..68567717, + |
2.55e-98 | FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr4:139501766..139501798, - |
2.55e-98 | FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr3:39827273..39827281, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p10@ALK |
2.55e-98 | FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr12:59444098..59444102, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p18@TGFB3 |
2.55e-98 | FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr9:74167667..74167687, - |
2.55e-98 | FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr8:133945378..133945386, + |
2.55e-98 | FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr9:19514976..19514978, - |
2.55e-98 | FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr19:48479835..48479841, - |
2.55e-98 | FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr19:35978717..35978722, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p2@ATAD3B |
2.55e-98 | FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr18:45498690..45498695, - |
2.55e-98 | FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p59@ANK3 |
2.55e-98 | FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr2:134472430..134472432, + |
2.55e-98 | FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr6:121951983..121951986, + |
2.55e-98 | FFCP PHASE1:Hg19::chr12:127992016..127992052,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr12:127992016..127992052, + |
2.55e-98 | FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr8:90420477..90420478, - |
2.55e-98 | FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr7:88535666..88535671, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr1:7709325..7709329, + |
2.55e-98 | FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_3ed8ef55777c3b623f5fc9b1f7764abf | p@chr8:22000519..22000525, - |