UBERON:0003902
From FANTOM5_SSTAR
Name: | retinal neural layer | ||
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Namespace: | FANTOM | ||
Definition: | "The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216] | ||
Xrefs: |
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Synonyms: |
"neural layer of retina" EXACT [FMA:58628] "neural retina" EXACT [XAO:0003216, ZFA:0000046] "neural retinal epithelium" RELATED [MA:000027] "neuroretina" EXACT [ZFA:0000046] "stratum nervosum (retina)" EXACT [FMA:58628] | ||
Comments: | editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers; the neural layers are further divided into 9 layers. Note that in MA this class is a leaf node. | ||
Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0001781(layer of retina) |
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develops_from: | UBERON:0005425(presumptive neural retina) |
Children
develops from: | UBERON:0000941 (cranial nerve II) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003902 (retinal neural layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
5.42e-195 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_6092a75c3cc5832f2304dfb768edd4fb | p@chr12:57628762..57628773, - |
5.42e-195 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_6092a75c3cc5832f2304dfb768edd4fb | p@chr12:57628762..57628773, - |
9.37e-99 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr18:25161980..25161984, - |
9.37e-99 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr7:15056365..15056368, - |
9.37e-99 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr7:15056365..15056368, - |
9.37e-99 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_c497e6b096e6f3ed0d221e00db461687 | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_c497e6b096e6f3ed0d221e00db461687 | p@chr18:25161980..25161984, - |
2.55e-98 | FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr18:39859562..39859566, + |
2.55e-98 | FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr4:130221053..130221071, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:171939999..171940009, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:7709325..7709329,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:7709325..7709329, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:1414652..1414695,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:1414652..1414695, + |
2.55e-98 | FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr10:22768515..22768517, + |
2.55e-98 | FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr16:51174920..51174928, - |
2.55e-98 | FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr4:139590958..139590961, - |
2.55e-98 | FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr8:133945378..133945386, + |
2.55e-98 | FFCP PHASE2:Hg19::chr5:109466651..109466653,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:109466651..109466653, + |
2.55e-98 | FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr10:22768515..22768517, + |
2.55e-98 | FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:103200303..103200307, + |
2.55e-98 | FFCP PHASE2:Hg19::chr11:30166055..30166059,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr11:30166055..30166059, - |
2.55e-98 | FFCP PHASE2:Hg19::chr12:127992016..127992052,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:127992016..127992052, + |
2.55e-98 | FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p3@ENST00000558781 |
2.55e-98 | FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:68527802..68527806, + |
2.55e-98 | FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr3:39827273..39827281, + |
2.55e-98 | FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr8:22000519..22000525, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:154942133..154942148, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p10@PPAP2A |
2.55e-98 | FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p59@ANK3 |
2.55e-98 | FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr4:188536760..188536764, - |
2.55e-98 | FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr17:47107522..47107524, + |
2.55e-98 | FFCP PHASE2:Hg19::chr16:66170755..66170759,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr16:66170755..66170759, - |
2.55e-98 | FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:7709325..7709329, + |
2.55e-98 | FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr4:139590958..139590961, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:109466651..109466653, + |
2.55e-98 | FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr6:16317123..16317126, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:88034381..88034386, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:218214846..218214850, - |
2.55e-98 | FFCP PHASE1:Hg19::chr2:171939999..171940009,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr2:171939999..171940009, - |
2.55e-98 | FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr7:95704857..95704906, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:103200303..103200307, + |
2.55e-98 | FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr13:64423563..64423566, + |
2.55e-98 | FFCP PHASE1:Hg19::chr16:89970522..89970530,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p9@TCF25 |
2.55e-98 | FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr16:66170755..66170759, - |
2.55e-98 | FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:154942133..154942148, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p10@PPAP2A |
2.55e-98 | FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:33229308..33229311, - |
2.55e-98 | FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr4:188536760..188536764, - |
2.55e-98 | FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:78718132..78718157, + |
2.55e-98 | FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr21:45724075..45724081, + |
2.55e-98 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:172318159..172318160, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:86911063..86911068,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:86911063..86911068, + |
2.55e-98 | FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr3:39827273..39827281, + |
2.55e-98 | FFCP PHASE1:Hg19::chr18:61506836..61506840,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr18:61506836..61506840, + |
2.55e-98 | FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr6:16317123..16317126, + |
2.55e-98 | FFCP PHASE1:Hg19::chr11:79291300..79291301,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr11:79291300..79291301, + |
2.55e-98 | FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chrX:25873187..25873209, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:218214846..218214850, - |
2.55e-98 | FFCP PHASE1:Hg19::chr11:2435409..2435443,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr11:2435409..2435443, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:44991346..44991355,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:44991346..44991355, + |
2.55e-98 | FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr8:126163123..126163134, + |
2.55e-98 | FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr19:20382476..20382481, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p2@ATAD3B |
2.55e-98 | FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr7:77789390..77789399, - |
2.55e-98 | FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p3@BC098451 |
2.55e-98 | FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr15:36402459..36402465, - |
2.55e-98 | FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:85119696..85119699, + |
2.55e-98 | FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr7:95704857..95704906, + |
2.55e-98 | FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p22@SOX2-OT |
2.55e-98 | FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr21:45724075..45724081, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:172318159..172318160, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:86911063..86911068, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr5:33229308..33229311, - |
2.55e-98 | FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr10:37679189..37679193, + |
2.55e-98 | FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chrX:25873187..25873209, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr14:68589926..68589929, + |
2.55e-98 | FFCP PHASE2:Hg19::chr10:37679189..37679193,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr10:37679189..37679193, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr1:44991346..44991355, + |
2.55e-98 | FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr8:126163123..126163134, + |
2.55e-98 | FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr19:20382476..20382481, - |
2.55e-98 | FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p10@ALK |
2.55e-98 | FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p2@ATAD3B |
2.55e-98 | FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr12:72875355..72875358, + |
2.55e-98 | FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr7:77789390..77789399, - |
2.55e-98 | FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p@chr18:39859562..39859566, + |
2.55e-98 | FFCP PHASE1:Hg19::chr11:20791058..20791067,+#_82099c57e0a429e7776f0c5a4c5e0b92 | p10@NELL1 |