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UBERON:0007806

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Name:connecting stalk
Namespace:FANTOM
Definition:"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
Xrefs:
links:

BTO:0004705

ncithesaurus:Connecting_Stalk
Comments:todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0005728(extraembryonic mesoderm)



Children

develops from:UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr9:75001932..75001956,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75001932..75001956, -
1.1e-59FFCP PHASE2:Hg19::chr6:135486487..135486491,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:135486487..135486491, +
1.1e-59FFCP PHASE2:Hg19::chr22:20105576..20105585,+#_1ac1f7fee605574c13bf5a8740d5fd0fp11@RANBP1
1.1e-59FFCP PHASE1:Hg19::chr1:146746588..146746604,+#_1ac1f7fee605574c13bf5a8740d5fd0fp5@CHD1L
1.1e-59FFCP PHASE1:Hg19::chr2:228216642..228216661,+#_1ac1f7fee605574c13bf5a8740d5fd0fp11@MFF
1.1e-59FFCP PHASE2:Hg19::chr6:87324188..87324195,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324188..87324195, +
1.1e-59FFCP PHASE1:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0fp42@IGFBP3
1.1e-59FFCP PHASE1:Hg19::chr19:42682291..42682301,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682291..42682301, -
1.1e-59FFCP PHASE2:Hg19::chr4:167957459..167957470,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167957459..167957470, -
1.1e-59FFCP PHASE1:Hg19::chr7:106397647..106397655,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397647..106397655, +
1.1e-59FFCP PHASE2:Hg19::chr21:18180062..18180079,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180062..18180079, -
1.1e-59FFCP PHASE1:Hg19::chr17:1985278..1985290,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:1985278..1985290, -
1.1e-59FFCP PHASE1:Hg19::chr2:148284480..148284484,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148284480..148284484, +
1.1e-59FFCP PHASE1:Hg19::chr6:138023154..138023161,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023154..138023161, -
1.1e-59FFCP PHASE1:Hg19::chr6:484679..484683,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484679..484683, +
1.1e-59FFCP PHASE2:Hg19::chr13:101999642..101999655,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr13:101999642..101999655, -
1.1e-59FFCP PHASE2:Hg19::chr9:74997054..74997058,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74997054..74997058, -
1.1e-59FFCP PHASE2:Hg19::chr1:207617923..207617929,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:207617923..207617929, -
1.1e-59FFCP PHASE1:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0fp6@VDAC3
1.1e-59FFCP PHASE2:Hg19::chr4:167791926..167791930,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167791926..167791930, -
1.1e-59FFCP PHASE2:Hg19::chr11:129247710..129247730,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:129247710..129247730, +
1.1e-59FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59970765..59970787, -
1.1e-59FFCP PHASE1:Hg19::chr11:129247710..129247730,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:129247710..129247730, +
1.1e-59FFCP PHASE1:Hg19::chr21:18178842..18178867,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18178842..18178867, -
1.1e-59FFCP PHASE1:Hg19::chr6:137816618..137816627,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:137816618..137816627, -
1.1e-59FFCP PHASE2:Hg19::chr2:148296759..148296767,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148296759..148296767, +
1.1e-59FFCP PHASE1:Hg19::chr3:111319059..111319101,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:111319059..111319101, -
1.1e-59FFCP PHASE1:Hg19::chr22:20105576..20105585,+#_1ac1f7fee605574c13bf5a8740d5fd0fp11@RANBP1
1.1e-59FFCP PHASE2:Hg19::chr6:138023078..138023089,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023078..138023089, -
1.1e-59FFCP PHASE2:Hg19::chr2:45063061..45063082,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:45063061..45063082, -
1.1e-59FFCP PHASE1:Hg19::chr2:2930946..2930963,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:2930946..2930963, +
1.1e-59FFCP PHASE1:Hg19::chr10:109197952..109197957,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:109197952..109197957, +
1.1e-59FFCP PHASE2:Hg19::chr1:212870782..212870788,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:212870782..212870788, -
1.1e-59FFCP PHASE1:Hg19::chr5:146717844..146717861,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:146717844..146717861, +
1.1e-59FFCP PHASE1:Hg19::chr4:167944606..167944610,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167944606..167944610, -
1.1e-59FFCP PHASE2:Hg19::chr10:120921294..120921306,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921294..120921306, -
1.1e-59FFCP PHASE1:Hg19::chr3:119279036..119279047,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119279036..119279047, +
1.1e-59FFCP PHASE1:Hg19::chr10:61574724..61574737,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:61574724..61574737, -
1.1e-59FFCP PHASE2:Hg19::chr19:49488921..49488932,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488921..49488932, -
1.1e-59FFCP PHASE2:Hg19::chr3:169775687..169775690,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:169775687..169775690, -
1.1e-59FFCP PHASE1:Hg19::chr8:56618992..56618998,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:56618992..56618998, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216588..228216609,+#_1ac1f7fee605574c13bf5a8740d5fd0fp10@MFF
1.1e-59FFCP PHASE2:Hg19::chr3:45926401..45926410,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926401..45926410, -
1.1e-59FFCP PHASE2:Hg19::chr16:86326031..86326033,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr16:86326031..86326033, +
1.1e-59FFCP PHASE1:Hg19::chr2:15633244..15633249,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:15633244..15633249, +
1.1e-59FFCP PHASE2:Hg19::chr12:129054695..129054717,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:129054695..129054717, -
1.1e-59FFCP PHASE2:Hg19::chr3:189266272..189266296,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:189266272..189266296, -
1.1e-59FFCP PHASE1:Hg19::chr4:182684840..182684848,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:182684840..182684848, +
1.1e-59FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_1ac1f7fee605574c13bf5a8740d5fd0fp14@MFF
1.1e-59FFCP PHASE1:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324200..87324219, +
1.1e-59FFCP PHASE1:Hg19::chr22:37484406..37484413,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr22:37484406..37484413, +
1.1e-59FFCP PHASE2:Hg19::chr10:15035430..15035449,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035430..15035449, -
1.1e-59FFCP PHASE1:Hg19::chr19:40074306..40074328,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:40074306..40074328, +
1.1e-59FFCP PHASE1:Hg19::chr20:38442102..38442111,+#_1ac1f7fee605574c13bf5a8740d5fd0f+, p@chr20:38442102..38442111
1.1e-59FFCP PHASE1:Hg19::chr4:85688154..85688161,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:85688154..85688161, -
1.1e-59FFCP PHASE2:Hg19::chr22:37484379..37484392,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr22:37484379..37484392, +
1.1e-59FFCP PHASE2:Hg19::chr4:167938808..167938815,-#_1ac1f7fee605574c13bf5a8740d5fd0f-, p@chr4:167938808..167938815
1.1e-59FFCP PHASE2:Hg19::chr19:53511711..53511720,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511711..53511720, -
1.1e-59FFCP PHASE2:Hg19::chr21:18178842..18178867,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18178842..18178867, -
1.1e-59FFCP PHASE1:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr15:43323772..43323785, -
1.1e-59FFCP PHASE1:Hg19::chr21:18180126..18180130,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180126..18180130, -
1.1e-59FFCP PHASE1:Hg19::chr6:138023015..138023024,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023015..138023024, -
1.1e-59FFCP PHASE2:Hg19::chr3:111319059..111319101,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:111319059..111319101, -
1.1e-59FFCP PHASE1:Hg19::chr5:162742836..162742845,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:162742836..162742845, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995293..74995311, -
1.1e-59FFCP PHASE2:Hg19::chr9:74995216..74995247,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995216..74995247, -
1.1e-59FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119281371..119281382, -
1.1e-59FFCP PHASE1:Hg19::chr3:45926316..45926329,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926316..45926329, -
1.1e-59FFCP PHASE1:Hg19::chr1:234765062..234765067,+#_1ac1f7fee605574c13bf5a8740d5fd0fp6@LINC00184
1.1e-59FFCP PHASE1:Hg19::chr10:111805643..111805655,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:111805643..111805655, -
1.1e-59FFCP PHASE2:Hg19::chr5:77713534..77713543,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:77713534..77713543, +
1.1e-59FFCP PHASE1:Hg19::chr14:76957827..76957835,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957827..76957835, +
1.1e-59FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148282641..148282654, +
1.1e-59FFCP PHASE1:Hg19::chr10:30336924..30336935,-#_1ac1f7fee605574c13bf5a8740d5fd0fp15@KIAA1462
1.1e-59FFCP PHASE2:Hg19::chr1:234765062..234765067,+#_1ac1f7fee605574c13bf5a8740d5fd0fp6@LINC00184
1.1e-59FFCP PHASE2:Hg19::chr19:18603318..18603327,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:18603318..18603327, -
1.1e-59FFCP PHASE2:Hg19::chr4:36393818..36393829,-#_1ac1f7fee605574c13bf5a8740d5fd0fp2@ENST00000504344
1.1e-59FFCP PHASE1:Hg19::chr19:49488905..49488920,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488905..49488920, -
1.1e-59FFCP PHASE1:Hg19::chr3:153038353..153038371,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:153038353..153038371, +
1.1e-59FFCP PHASE2:Hg19::chr17:1985278..1985290,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:1985278..1985290, -
1.1e-59FFCP PHASE1:Hg19::chr2:74682916..74682923,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:74682916..74682923, +
1.1e-59FFCP PHASE2:Hg19::chr14:76957814..76957826,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957814..76957826, +
1.1e-59FFCP PHASE1:Hg19::chr10:15035404..15035424,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035404..15035424, -
1.1e-59FFCP PHASE2:Hg19::chr19:42682291..42682301,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682291..42682301, -
1.1e-59FFCP PHASE1:Hg19::chr9:75002215..75002221,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75002215..75002221, -
1.1e-59FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:212870782..212870788, -
1.1e-59FFCP PHASE2:Hg19::chr7:135735084..135735112,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135735084..135735112, +
1.1e-59FFCP PHASE2:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324200..87324219, +
1.1e-59FFCP PHASE1:Hg19::chr7:45954712..45954720,-#_1ac1f7fee605574c13bf5a8740d5fd0fp41@IGFBP3
1.1e-59FFCP PHASE2:Hg19::chr8:59790413..59790418,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59790413..59790418, -
1.1e-59FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148293141..148293150, +
1.1e-59FFCP PHASE2:Hg19::chrX:109653507..109653518,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chrX:109653507..109653518, +
1.1e-59FFCP PHASE1:Hg19::chr12:24889813..24889821,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:24889813..24889821, -
1.1e-59FFCP PHASE2:Hg19::chr20:38442102..38442111,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:38442102..38442111, +

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