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UBERON:0007806

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Name:connecting stalk
Namespace:FANTOM
Definition:"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
Xrefs:
links:

BTO:0004705

ncithesaurus:Connecting_Stalk
Comments:todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0005728(extraembryonic mesoderm)



Children

develops from:UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59970765..59970787, -
1.1e-59FFCP PHASE1:Hg19::chr2:53245239..53245255,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:53245239..53245255, -
1.1e-59FFCP PHASE1:Hg19::chr10:120921395..120921406,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921395..120921406, -
1.1e-59FFCP PHASE1:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:172807491..172807499, -
1.1e-59FFCP PHASE1:Hg19::chr3:180050773..180050786,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:180050773..180050786, +
1.1e-59FFCP PHASE1:Hg19::chr21:18180040..18180058,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180040..18180058, -
1.1e-59FFCP PHASE1:Hg19::chr13:102271725..102271736,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr13:102271725..102271736, +
1.1e-59FFCP PHASE2:Hg19::chr6:87324188..87324195,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324188..87324195, +
1.1e-59FFCP PHASE1:Hg19::chr6:491208..491217,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:491208..491217, -
1.1e-59FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324164..87324175, +
1.1e-59FFCP PHASE2:Hg19::chr5:77713534..77713543,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:77713534..77713543, +
1.1e-59FFCP PHASE1:Hg19::chr17:64034078..64034124,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:64034078..64034124, -
1.1e-59FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106363860..106363870, -
1.1e-59FFCP PHASE1:Hg19::chr19:53511749..53511757,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511749..53511757, -
1.1e-59FFCP PHASE1:Hg19::chr14:76957782..76957792,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957782..76957792, +
1.1e-59FFCP PHASE2:Hg19::chr21:18180062..18180079,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180062..18180079, -
1.1e-59FFCP PHASE1:Hg19::chr10:31996512..31996530,-#_1ac1f7fee605574c13bf5a8740d5fd0fp5@ENST00000433770
1.1e-59FFCP PHASE1:Hg19::chr1:207627342..207627349,+#_1ac1f7fee605574c13bf5a8740d5fd0fp3@CR2
1.1e-59FFCP PHASE1:Hg19::chr4:167957459..167957470,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167957459..167957470, -
1.1e-59FFCP PHASE1:Hg19::chr9:75001932..75001956,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75001932..75001956, -
1.1e-59FFCP PHASE2:Hg19::chr22:37484379..37484392,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr22:37484379..37484392, +
1.1e-59FFCP PHASE1:Hg19::chr12:130530117..130530125,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:130530117..130530125, -
1.1e-59FFCP PHASE2:Hg19::chr6:150322254..150322291,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:150322254..150322291, -
1.1e-59FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771722..22771733, +
1.1e-59FFCP PHASE2:Hg19::chr17:64034078..64034124,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:64034078..64034124, -
1.1e-59FFCP PHASE1:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771662..22771675, +
1.1e-59FFCP PHASE2:Hg19::chr2:45063061..45063082,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:45063061..45063082, -
1.1e-59FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106363901..106363915, -
1.1e-59FFCP PHASE2:Hg19::chr2:11264766..11264775,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:11264766..11264775, -
1.1e-59FFCP PHASE2:Hg19::chr6:31150998..31151005,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:31150998..31151005, -
1.1e-59FFCP PHASE2:Hg19::chr19:53511768..53511784,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511768..53511784, -
1.1e-59FFCP PHASE2:Hg19::chr3:157301317..157301362,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:157301317..157301362, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957754..76957760,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957754..76957760, +
1.1e-59FFCP PHASE2:Hg19::chr6:135486487..135486491,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:135486487..135486491, +
1.1e-59FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705366..135705371, +
1.1e-59FFCP PHASE2:Hg19::chr11:90524493..90524505,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:90524493..90524505, +
1.1e-59FFCP PHASE1:Hg19::chr4:167791926..167791930,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167791926..167791930, -
1.1e-59FFCP PHASE2:Hg19::chr9:75002215..75002221,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75002215..75002221, -
1.1e-59FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0fp6@VDAC3
1.1e-59FFCP PHASE2:Hg19::chr11:117957610..117957619,-#_1ac1f7fee605574c13bf5a8740d5fd0fp3@LOC100526771
1.1e-59FFCP PHASE2:Hg19::chr19:18603318..18603327,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:18603318..18603327, -
1.1e-59FFCP PHASE1:Hg19::chr3:119281371..119281382,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119281371..119281382, -
1.1e-59FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0fp42@IGFBP3
1.1e-59FFCP PHASE2:Hg19::chr19:49488858..49488869,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488858..49488869, -
1.1e-59FFCP PHASE1:Hg19::chr19:42682242..42682253,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682242..42682253, -
1.1e-59FFCP PHASE2:Hg19::chr7:135705379..135705388,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705379..135705388, +
1.1e-59FFCP PHASE1:Hg19::chr2:148282641..148282654,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148282641..148282654, +
1.1e-59FFCP PHASE2:Hg19::chr9:74981579..74981583,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74981579..74981583, -
1.1e-59FFCP PHASE1:Hg19::chr19:7599792..7599797,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:7599792..7599797, +
1.1e-59FFCP PHASE2:Hg19::chr21:43934923..43934932,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:43934923..43934932, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216642..228216661,+#_1ac1f7fee605574c13bf5a8740d5fd0fp11@MFF
1.1e-59FFCP PHASE1:Hg19::chr2:228216610..228216617,+#_1ac1f7fee605574c13bf5a8740d5fd0fp18@MFF
1.1e-59FFCP PHASE2:Hg19::chr12:24770576..24770594,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:24770576..24770594, -
1.1e-59FFCP PHASE1:Hg19::chr7:106397597..106397610,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397597..106397610, +
1.1e-59FFCP PHASE2:Hg19::chr2:148284480..148284484,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148284480..148284484, +
1.1e-59FFCP PHASE1:Hg19::chr1:168204286..168204299,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:168204286..168204299, +
1.1e-59FFCP PHASE2:Hg19::chr15:43323789..43323811,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr15:43323789..43323811, -
1.1e-59FFCP PHASE1:Hg19::chr21:18170731..18170736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18170731..18170736, -
1.1e-59FFCP PHASE2:Hg19::chr6:138023154..138023161,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023154..138023161, -
1.1e-59FFCP PHASE1:Hg19::chr13:101999642..101999655,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr13:101999642..101999655, -
1.1e-59FFCP PHASE2:Hg19::chr10:111805635..111805642,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:111805635..111805642, -
1.1e-59FFCP PHASE2:Hg19::chr1:146746588..146746604,+#_1ac1f7fee605574c13bf5a8740d5fd0fp5@CHD1L
1.1e-59FFCP PHASE1:Hg19::chr3:195306434..195306439,-#_1ac1f7fee605574c13bf5a8740d5fd0fp10@APOD
1.1e-59FFCP PHASE2:Hg19::chr12:130530197..130530209,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:130530197..130530209, -
1.1e-59FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:149490934..149490939, -
1.1e-59FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926401..45926410, -
1.1e-59FFCP PHASE2:Hg19::chr19:42682291..42682301,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682291..42682301, -
1.1e-59FFCP PHASE1:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:31524425..31524444, -
1.1e-59FFCP PHASE1:Hg19::chr1:234631379..234631392,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:234631379..234631392, -
1.1e-59FFCP PHASE2:Hg19::chrX:146004822..146004839,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chrX:146004822..146004839, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397632..106397643,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397632..106397643, +
1.1e-59FFCP PHASE2:Hg19::chr21:18178842..18178867,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18178842..18178867, -
1.1e-59FFCP PHASE2:Hg19::chr6:137816618..137816627,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:137816618..137816627, -
1.1e-59FFCP PHASE2:Hg19::chr3:111319059..111319101,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:111319059..111319101, -
1.1e-59FFCP PHASE2:Hg19::chr7:142250929..142250940,-#_1ac1f7fee605574c13bf5a8740d5fd0fp3@AF430683, p3@AF430684, p3@AF430685
1.1e-59FFCP PHASE1:Hg19::chr7:135738522..135738525,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135738522..135738525, -
1.1e-59FFCP PHASE2:Hg19::chr6:484679..484683,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484679..484683, +
1.1e-59FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167938808..167938815, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995293..74995311, -
1.1e-59FFCP PHASE2:Hg19::chr8:56625901..56625913,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:56625901..56625913, +
1.1e-59FFCP PHASE1:Hg19::chr8:56618992..56618998,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:56618992..56618998, +
1.1e-59FFCP PHASE1:Hg19::chr19:10987850..10987854,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:10987850..10987854, +
1.1e-59FFCP PHASE2:Hg19::chr2:2930946..2930963,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:2930946..2930963, +
1.1e-59FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:28145264..28145272, -
1.1e-59FFCP PHASE2:Hg19::chr10:15013428..15013456,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15013428..15013456, -
1.1e-59FFCP PHASE2:Hg19::chr8:12548586..12548602,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:12548586..12548602, -
1.1e-59FFCP PHASE2:Hg19::chr14:76017349..76017357,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76017349..76017357, -
1.1e-59FFCP PHASE2:Hg19::chr5:146717844..146717861,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:146717844..146717861, +
1.1e-59FFCP PHASE2:Hg19::chr4:167944606..167944610,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167944606..167944610, -
1.1e-59FFCP PHASE2:Hg19::chr22:20105576..20105585,+#_1ac1f7fee605574c13bf5a8740d5fd0fp11@RANBP1
1.1e-59FFCP PHASE1:Hg19::chr5:77713534..77713543,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:77713534..77713543, +
1.1e-59FFCP PHASE2:Hg19::chr2:15633244..15633249,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:15633244..15633249, +
1.1e-59FFCP PHASE1:Hg19::chr10:120924761..120924770,-#_1ac1f7fee605574c13bf5a8740d5fd0fp10@SFXN4
1.1e-59FFCP PHASE1:Hg19::chr11:90524493..90524505,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:90524493..90524505, +