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UBERON:0007806

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Name:connecting stalk
Namespace:FANTOM
Definition:"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
Xrefs:
links:

BTO:0004705

ncithesaurus:Connecting_Stalk
Comments:todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0005728(extraembryonic mesoderm)



Children

develops from:UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
1.1e-59FFCP PHASE2:Hg19::chr10:61574767..61574776,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:61574767..61574776, -
1.1e-59FFCP PHASE1:Hg19::chr2:74682916..74682923,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:74682916..74682923, +
1.1e-59FFCP PHASE1:Hg19::chr7:135705408..135705462,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705408..135705462, +
1.1e-59FFCP PHASE2:Hg19::chr4:6191002..6191007,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:6191002..6191007, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397647..106397655,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397647..106397655, +
1.1e-59FFCP PHASE1:Hg19::chr9:74986248..74986275,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74986248..74986275, -
1.1e-59FFCP PHASE2:Hg19::chr3:169775687..169775690,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:169775687..169775690, -
1.1e-59FFCP PHASE2:Hg19::chr21:18179708..18179733,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18179708..18179733, -
1.1e-59FFCP PHASE2:Hg19::chr3:111331533..111331540,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:111331533..111331540, -
1.1e-59FFCP PHASE2:Hg19::chr6:484706..484722,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484706..484722, +
1.1e-59FFCP PHASE2:Hg19::chr3:33024873..33024877,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:33024873..33024877, -
1.1e-59FFCP PHASE1:Hg19::chr19:49488905..49488920,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488905..49488920, -
1.1e-59FFCP PHASE1:Hg19::chr3:153038353..153038371,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:153038353..153038371, +
1.1e-59FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148293141..148293150, +
1.1e-59FFCP PHASE2:Hg19::chr19:53510877..53510886,+#_1ac1f7fee605574c13bf5a8740d5fd0fp2@uc002qao.2
1.1e-59FFCP PHASE2:Hg19::chr14:76017386..76017395,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76017386..76017395, -
1.1e-59FFCP PHASE2:Hg19::chr6:135486309..135486312,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:135486309..135486312, +
1.1e-59FFCP PHASE2:Hg19::chr10:120921294..120921306,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921294..120921306, -
1.1e-59FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:212870782..212870788, -
1.1e-59FFCP PHASE2:Hg19::chr1:207617923..207617929,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:207617923..207617929, -
1.1e-59FFCP PHASE2:Hg19::chr4:167951727..167951732,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167951727..167951732, -
1.1e-59FFCP PHASE2:Hg19::chr9:74996801..74996811,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74996801..74996811, -
1.1e-59FFCP PHASE2:Hg19::chr8:38216859..38216889,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:38216859..38216889, -
1.1e-59FFCP PHASE1:Hg19::chr3:169775687..169775690,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:169775687..169775690, -
1.1e-59FFCP PHASE1:Hg19::chr21:18179708..18179733,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18179708..18179733, -
1.1e-59FFCP PHASE2:Hg19::chr20:38442120..38442126,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:38442120..38442126, +
1.1e-59FFCP PHASE1:Hg19::chr10:61574767..61574776,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:61574767..61574776, -
1.1e-59FFCP PHASE1:Hg19::chr3:111331533..111331540,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:111331533..111331540, -
1.1e-59FFCP PHASE1:Hg19::chr6:484706..484722,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484706..484722, +
1.1e-59FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:65209811..65209818, +
1.1e-59FFCP PHASE2:Hg19::chr2:15651894..15651904,-#_1ac1f7fee605574c13bf5a8740d5fd0fp4@NBAS
1.1e-59FFCP PHASE2:Hg19::chr4:167748986..167748989,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167748986..167748989, -
1.1e-59FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119279086..119279095, +
1.1e-59FFCP PHASE1:Hg19::chr4:6191002..6191007,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:6191002..6191007, -
1.1e-59FFCP PHASE1:Hg19::chr12:77198556..77198565,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:77198556..77198565, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216568..228216578,+#_1ac1f7fee605574c13bf5a8740d5fd0fp15@MFF
1.1e-59FFCP PHASE1:Hg19::chr7:106397647..106397655,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397647..106397655, +
1.1e-59FFCP PHASE2:Hg19::chr6:88854777..88854802,-#_1ac1f7fee605574c13bf5a8740d5fd0fp16@CNR1
1.1e-59FFCP PHASE1:Hg19::chr14:76957754..76957760,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957754..76957760, +
1.1e-59FFCP PHASE1:Hg19::chr6:135486309..135486312,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:135486309..135486312, +
1.1e-59FFCP PHASE1:Hg19::chr1:207617923..207617929,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:207617923..207617929, -
1.1e-59FFCP PHASE1:Hg19::chr4:167951727..167951732,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167951727..167951732, -
1.1e-59FFCP PHASE1:Hg19::chr9:74996801..74996811,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74996801..74996811, -
1.1e-59FFCP PHASE2:Hg19::chr2:148278743..148278751,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148278743..148278751, +
1.1e-59FFCP PHASE1:Hg19::chr3:33024873..33024877,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:33024873..33024877, -
1.1e-59FFCP PHASE2:Hg19::chr10:15035430..15035449,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035430..15035449, -
1.1e-59FFCP PHASE1:Hg19::chr10:120921294..120921306,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921294..120921306, -
1.1e-59FFCP PHASE2:Hg19::chr9:94933452..94933457,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:94933452..94933457, +
1.1e-59FFCP PHASE2:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926344..45926350, -
1.1e-59FFCP PHASE1:Hg19::chr19:53510877..53510886,+#_1ac1f7fee605574c13bf5a8740d5fd0fp2@uc002qao.2
1.1e-59FFCP PHASE1:Hg19::chr2:65209811..65209818,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:65209811..65209818, +
1.1e-59FFCP PHASE1:Hg19::chr2:15651894..15651904,-#_1ac1f7fee605574c13bf5a8740d5fd0fp4@NBAS
1.1e-59FFCP PHASE1:Hg19::chr4:167748986..167748989,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167748986..167748989, -
1.1e-59FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:129054695..129054717, -
1.1e-59FFCP PHASE1:Hg19::chr8:38216859..38216889,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:38216859..38216889, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957782..76957792,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957782..76957792, +
1.1e-59FFCP PHASE1:Hg19::chr3:119279086..119279095,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119279086..119279095, +
1.1e-59FFCP PHASE2:Hg19::chr4:167982726..167982736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167982726..167982736, -
1.1e-59FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:149464325..149464336, -
1.1e-59FFCP PHASE1:Hg19::chr16:86326031..86326033,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr16:86326031..86326033, +
1.1e-59FFCP PHASE1:Hg19::chr2:148278743..148278751,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148278743..148278751, +
1.1e-59FFCP PHASE2:Hg19::chr7:102945487..102945492,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:102945487..102945492, +
1.1e-59FFCP PHASE1:Hg19::chr15:43323789..43323811,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr15:43323789..43323811, -
1.1e-59FFCP PHASE2:Hg19::chr19:49488921..49488932,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488921..49488932, -
1.1e-59FFCP PHASE1:Hg19::chr9:94933452..94933457,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:94933452..94933457, +
1.1e-59FFCP PHASE1:Hg19::chr2:228216568..228216578,+#_1ac1f7fee605574c13bf5a8740d5fd0fp15@MFF
1.1e-59FFCP PHASE1:Hg19::chr6:88854777..88854802,-#_1ac1f7fee605574c13bf5a8740d5fd0fp16@CNR1
1.1e-59FFCP PHASE2:Hg19::chr9:74995205..74995211,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995205..74995211, -
1.1e-59FFCP PHASE1:Hg19::chr20:38442120..38442126,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:38442120..38442126, +
1.1e-59FFCP PHASE1:Hg19::chr10:15035430..15035449,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035430..15035449, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216837..228216846,+#_1ac1f7fee605574c13bf5a8740d5fd0fp17@MFF
1.1e-59FFCP PHASE2:Hg19::chr20:33691683..33691699,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:33691683..33691699, +
1.1e-59FFCP PHASE1:Hg19::chr4:167982726..167982736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167982726..167982736, -
1.1e-59FFCP PHASE2:Hg19::chr2:148293218..148293252,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148293218..148293252, +
1.1e-59FFCP PHASE2:Hg19::chr12:129054695..129054717,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:129054695..129054717, -
1.1e-59FFCP PHASE1:Hg19::chr6:149464325..149464336,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:149464325..149464336, -
1.1e-59FFCP PHASE2:Hg19::chr11:128154946..128154955,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:128154946..128154955, +
1.1e-59FFCP PHASE1:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926344..45926350, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995205..74995211,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995205..74995211, -
1.1e-59FFCP PHASE2:Hg19::chr21:18179795..18179798,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18179795..18179798, -
1.1e-59FFCP PHASE1:Hg19::chr7:102945487..102945492,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:102945487..102945492, +
1.1e-59FFCP PHASE1:Hg19::chr19:49488921..49488932,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488921..49488932, -
1.1e-59FFCP PHASE1:Hg19::chr14:76017349..76017357,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76017349..76017357, -
1.1e-59FFCP PHASE1:Hg19::chr2:148293218..148293252,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148293218..148293252, +
1.1e-59FFCP PHASE2:Hg19::chr4:36393818..36393829,-#_1ac1f7fee605574c13bf5a8740d5fd0fp2@ENST00000504344
1.1e-59FFCP PHASE2:Hg19::chr19:53511711..53511720,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511711..53511720, -
1.1e-59FFCP PHASE2:Hg19::chr10:120921395..120921406,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921395..120921406, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216837..228216846,+#_1ac1f7fee605574c13bf5a8740d5fd0fp17@MFF
1.1e-59FFCP PHASE2:Hg19::chr6:42362820..42362827,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:42362820..42362827, -
1.1e-59FFCP PHASE2:Hg19::chr4:167951900..167951907,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167951900..167951907, -
1.1e-59FFCP PHASE2:Hg19::chr9:74997054..74997058,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74997054..74997058, -
1.1e-59FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:128154946..128154955, +
1.1e-59FFCP PHASE1:Hg19::chr21:18179795..18179798,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18179795..18179798, -
1.1e-59FFCP PHASE2:Hg19::chr13:102271725..102271736,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr13:102271725..102271736, +

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