Personal tools

UBERON:0007806

From FANTOM5_SSTAR

Jump to: navigation, search

Name:connecting stalk
Namespace:FANTOM
Definition:"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
Xrefs:
links:

BTO:0004705

ncithesaurus:Connecting_Stalk
Comments:todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0005728(extraembryonic mesoderm)



Children

develops from:UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
1.1e-59FFCP PHASE2:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771662..22771675, +
1.1e-59FFCP PHASE2:Hg19::chr8:59970765..59970787,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59970765..59970787, -
1.1e-59FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135735084..135735112, +
1.1e-59FFCP PHASE2:Hg19::chr2:53245239..53245255,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:53245239..53245255, -
1.1e-59FFCP PHASE1:Hg19::chr4:167932279..167932291,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167932279..167932291, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995216..74995247,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995216..74995247, -
1.1e-59FFCP PHASE1:Hg19::chr3:189266272..189266296,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:189266272..189266296, -
1.1e-59FFCP PHASE2:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:172807491..172807499, -
1.1e-59FFCP PHASE2:Hg19::chr3:180050773..180050786,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:180050773..180050786, +
1.1e-59FFCP PHASE1:Hg19::chr19:10983266..10983276,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:10983266..10983276, -
1.1e-59FFCP PHASE2:Hg19::chr21:18180040..18180058,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180040..18180058, -
1.1e-59FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:128154946..128154955, +
1.1e-59FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chrX:109653507..109653518, +
1.1e-59FFCP PHASE2:Hg19::chr6:491208..491217,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:491208..491217, -
1.1e-59FFCP PHASE1:Hg19::chr14:76017386..76017395,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76017386..76017395, -
1.1e-59FFCP PHASE1:Hg19::chr2:148296759..148296767,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148296759..148296767, +
1.1e-59FFCP PHASE2:Hg19::chr7:106363860..106363870,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106363860..106363870, -
1.1e-59FFCP PHASE2:Hg19::chr19:53511749..53511757,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511749..53511757, -
1.1e-59FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:17543537..17543548, -
1.1e-59FFCP PHASE2:Hg19::chr10:120924761..120924770,-#_1ac1f7fee605574c13bf5a8740d5fd0fp10@SFXN4
1.1e-59FFCP PHASE1:Hg19::chrX:10129292..10129306,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chrX:10129292..10129306, +
1.1e-59FFCP PHASE2:Hg19::chr17:40021018..40021028,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:40021018..40021028, +
1.1e-59FFCP PHASE2:Hg19::chr1:207627342..207627349,+#_1ac1f7fee605574c13bf5a8740d5fd0fp3@CR2
1.1e-59FFCP PHASE2:Hg19::chr4:167957459..167957470,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167957459..167957470, -
1.1e-59FFCP PHASE2:Hg19::chr9:75001932..75001956,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75001932..75001956, -
1.1e-59FFCP PHASE1:Hg19::chr3:75655787..75655802,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:75655787..75655802, -
1.1e-59FFCP PHASE1:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:172807491..172807499, -
1.1e-59FFCP PHASE1:Hg19::chr3:180050773..180050786,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:180050773..180050786, +
1.1e-59FFCP PHASE1:Hg19::chr21:18180040..18180058,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180040..18180058, -
1.1e-59FFCP PHASE1:Hg19::chr6:491208..491217,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:491208..491217, -
1.1e-59FFCP PHASE2:Hg19::chr7:135705366..135705371,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705366..135705371, +
1.1e-59FFCP PHASE1:Hg19::chr10:120921395..120921406,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921395..120921406, -
1.1e-59FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324164..87324175, +
1.1e-59FFCP PHASE2:Hg19::chr4:167791926..167791930,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167791926..167791930, -
1.1e-59FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59970765..59970787, -
1.1e-59FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119281371..119281382, -
1.1e-59FFCP PHASE1:Hg19::chr13:102271725..102271736,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr13:102271725..102271736, +
1.1e-59FFCP PHASE1:Hg19::chr2:53245239..53245255,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:53245239..53245255, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216610..228216617,+#_1ac1f7fee605574c13bf5a8740d5fd0fp18@MFF
1.1e-59FFCP PHASE1:Hg19::chr14:76957782..76957792,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957782..76957792, +
1.1e-59FFCP PHASE2:Hg19::chr19:42682242..42682253,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682242..42682253, -
1.1e-59FFCP PHASE1:Hg19::chr1:207627342..207627349,+#_1ac1f7fee605574c13bf5a8740d5fd0fp3@CR2
1.1e-59FFCP PHASE1:Hg19::chr4:167957459..167957470,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167957459..167957470, -
1.1e-59FFCP PHASE1:Hg19::chr9:75001932..75001956,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75001932..75001956, -
1.1e-59FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148282641..148282654, +
1.1e-59FFCP PHASE2:Hg19::chr19:7599792..7599797,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:7599792..7599797, +
1.1e-59FFCP PHASE2:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr15:43323772..43323785, -
1.1e-59FFCP PHASE1:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771662..22771675, +
1.1e-59FFCP PHASE1:Hg19::chr17:64034078..64034124,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:64034078..64034124, -
1.1e-59FFCP PHASE1:Hg19::chr10:31996512..31996530,-#_1ac1f7fee605574c13bf5a8740d5fd0fp5@ENST00000433770
1.1e-59FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106363860..106363870, -
1.1e-59FFCP PHASE2:Hg19::chr3:45926401..45926410,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926401..45926410, -
1.1e-59FFCP PHASE1:Hg19::chr12:130530117..130530125,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:130530117..130530125, -
1.1e-59FFCP PHASE1:Hg19::chr19:53511749..53511757,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511749..53511757, -
1.1e-59FFCP PHASE2:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:31524425..31524444, -
1.1e-59FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705366..135705371, +
1.1e-59FFCP PHASE2:Hg19::chr11:90524493..90524505,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:90524493..90524505, +
1.1e-59FFCP PHASE1:Hg19::chr4:167791926..167791930,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167791926..167791930, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397597..106397610,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397597..106397610, +
1.1e-59FFCP PHASE2:Hg19::chr1:168204286..168204299,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:168204286..168204299, +
1.1e-59FFCP PHASE2:Hg19::chr11:117957610..117957619,-#_1ac1f7fee605574c13bf5a8740d5fd0fp3@LOC100526771
1.1e-59FFCP PHASE2:Hg19::chr14:76957827..76957835,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957827..76957835, +
1.1e-59FFCP PHASE2:Hg19::chr21:18170731..18170736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18170731..18170736, -
1.1e-59FFCP PHASE1:Hg19::chr3:119281371..119281382,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119281371..119281382, -
1.1e-59FFCP PHASE2:Hg19::chr3:195306434..195306439,-#_1ac1f7fee605574c13bf5a8740d5fd0fp10@APOD
1.1e-59FFCP PHASE2:Hg19::chr8:56618992..56618998,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:56618992..56618998, +
1.1e-59FFCP PHASE2:Hg19::chr6:149490934..149490939,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:149490934..149490939, -
1.1e-59FFCP PHASE2:Hg19::chr5:28145264..28145272,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:28145264..28145272, -
1.1e-59FFCP PHASE2:Hg19::chr1:234631379..234631392,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:234631379..234631392, -
1.1e-59FFCP PHASE1:Hg19::chr2:148282641..148282654,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148282641..148282654, +
1.1e-59FFCP PHASE1:Hg19::chr19:7599792..7599797,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:7599792..7599797, +
1.1e-59FFCP PHASE2:Hg19::chr7:135738522..135738525,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135738522..135738525, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216610..228216617,+#_1ac1f7fee605574c13bf5a8740d5fd0fp18@MFF
1.1e-59FFCP PHASE2:Hg19::chr12:24770576..24770594,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:24770576..24770594, -
1.1e-59FFCP PHASE2:Hg19::chr4:167938808..167938815,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167938808..167938815, -
1.1e-59FFCP PHASE2:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995293..74995311, -
1.1e-59FFCP PHASE1:Hg19::chr19:42682242..42682253,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682242..42682253, -
1.1e-59FFCP PHASE2:Hg19::chr19:10987850..10987854,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:10987850..10987854, +
1.1e-59FFCP PHASE1:Hg19::chr21:18170731..18170736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18170731..18170736, -
1.1e-59FFCP PHASE2:Hg19::chr10:111805635..111805642,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:111805635..111805642, -
1.1e-59FFCP PHASE1:Hg19::chr3:195306434..195306439,-#_1ac1f7fee605574c13bf5a8740d5fd0fp10@APOD
1.1e-59FFCP PHASE2:Hg19::chr12:130530197..130530209,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:130530197..130530209, -
1.1e-59FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:149490934..149490939, -
1.1e-59FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926401..45926410, -
1.1e-59FFCP PHASE1:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:31524425..31524444, -
1.1e-59FFCP PHASE1:Hg19::chr13:101999642..101999655,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr13:101999642..101999655, -
1.1e-59FFCP PHASE1:Hg19::chr7:106397597..106397610,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397597..106397610, +
1.1e-59FFCP PHASE2:Hg19::chr6:87324188..87324195,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324188..87324195, +
1.1e-59FFCP PHASE1:Hg19::chr1:168204286..168204299,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:168204286..168204299, +
1.1e-59FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771722..22771733, +
1.1e-59FFCP PHASE2:Hg19::chr17:64034078..64034124,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:64034078..64034124, -
1.1e-59FFCP PHASE2:Hg19::chr5:77713534..77713543,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:77713534..77713543, +
1.1e-59FFCP PHASE1:Hg19::chr7:135738522..135738525,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135738522..135738525, -
1.1e-59FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167938808..167938815, -