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UBERON:0005728

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Name:extraembryonic mesoderm
Namespace:FANTOM
Definition:"." [1]
Xrefs:
links:

EHDAA2:0000474

VHOG:0000616
Synonyms: "extra-embryonic mesoderm" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue),UBERON:0007524(dense mesenchyme tissue)
develops_from:UBERON:0003081(lateral plate mesoderm),UBERON:0008780(inner cell mass derived epiblast)
part_of:UBERON:0016887(entire extraembryonic component)



Children

develops from:UBERON:0007806 (connecting stalk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005728 (extraembryonic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr22:37484406..37484413,+#_f1700f6fa279d66bc6746540ac32fc48p@chr22:37484406..37484413, +
1.1e-59FFCP PHASE2:Hg19::chr9:74986248..74986275,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74986248..74986275, -
1.1e-59FFCP PHASE1:Hg19::chr19:40074306..40074328,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:40074306..40074328, +
1.1e-59FFCP PHASE1:Hg19::chr20:38442102..38442111,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:38442102..38442111, +
1.1e-59FFCP PHASE1:Hg19::chr4:85688154..85688161,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:85688154..85688161, -
1.1e-59FFCP PHASE1:Hg19::chr10:15035404..15035424,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:15035404..15035424, -
1.1e-59FFCP PHASE1:Hg19::chr15:43323772..43323785,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323772..43323785, -
1.1e-59FFCP PHASE1:Hg19::chr21:18180126..18180130,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18180126..18180130, -
1.1e-59FFCP PHASE1:Hg19::chr6:138023015..138023024,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:138023015..138023024, -
1.1e-59FFCP PHASE2:Hg19::chr19:49488905..49488920,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:49488905..49488920, -
1.1e-59FFCP PHASE2:Hg19::chr3:153038353..153038371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:153038353..153038371, +
1.1e-59FFCP PHASE1:Hg19::chr5:162742836..162742845,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:162742836..162742845, -
1.1e-59FFCP PHASE2:Hg19::chr2:74682916..74682923,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:74682916..74682923, +
1.1e-59FFCP PHASE1:Hg19::chr4:182684840..182684848,+#_f1700f6fa279d66bc6746540ac32fc48p@chr4:182684840..182684848, +
1.1e-59FFCP PHASE2:Hg19::chr7:135705408..135705462,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705408..135705462, +
1.1e-59FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_f1700f6fa279d66bc6746540ac32fc48p14@MFF
1.1e-59FFCP PHASE1:Hg19::chr6:87324200..87324219,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324200..87324219, +
1.1e-59FFCP PHASE1:Hg19::chr8:59790413..59790418,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:59790413..59790418, -
1.1e-59FFCP PHASE1:Hg19::chr7:45954712..45954720,-#_f1700f6fa279d66bc6746540ac32fc48p41@IGFBP3
1.1e-59FFCP PHASE1:Hg19::chr1:234765062..234765067,+#_f1700f6fa279d66bc6746540ac32fc48p6@LINC00184
1.1e-59FFCP PHASE2:Hg19::chr1:212870782..212870788,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:212870782..212870788, -
1.1e-59FFCP PHASE1:Hg19::chr14:76957827..76957835,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957827..76957835, +
1.1e-59FFCP PHASE2:Hg19::chr17:1985278..1985290,-#_f1700f6fa279d66bc6746540ac32fc48p@chr17:1985278..1985290, -
1.1e-59FFCP PHASE2:Hg19::chr2:148293141..148293150,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148293141..148293150, +
1.1e-59FFCP PHASE1:Hg19::chr3:45926316..45926329,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926316..45926329, -
1.1e-59FFCP PHASE2:Hg19::chr3:111331533..111331540,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111331533..111331540, -
1.1e-59FFCP PHASE2:Hg19::chr6:484706..484722,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:484706..484722, +
1.1e-59FFCP PHASE2:Hg19::chr3:33024873..33024877,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:33024873..33024877, -
1.1e-59FFCP PHASE1:Hg19::chr19:49488905..49488920,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:49488905..49488920, -
1.1e-59FFCP PHASE1:Hg19::chr3:153038353..153038371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:153038353..153038371, +
1.1e-59FFCP PHASE2:Hg19::chr10:61574767..61574776,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:61574767..61574776, -
1.1e-59FFCP PHASE1:Hg19::chr2:74682916..74682923,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:74682916..74682923, +
1.1e-59FFCP PHASE1:Hg19::chr7:135705408..135705462,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705408..135705462, +
1.1e-59FFCP PHASE2:Hg19::chr4:6191002..6191007,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:6191002..6191007, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397647..106397655,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106397647..106397655, +
1.1e-59FFCP PHASE1:Hg19::chr9:74986248..74986275,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74986248..74986275, -
1.1e-59FFCP PHASE2:Hg19::chr3:169775687..169775690,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:169775687..169775690, -
1.1e-59FFCP PHASE2:Hg19::chr21:18179708..18179733,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18179708..18179733, -
1.1e-59FFCP PHASE2:Hg19::chr1:207617923..207617929,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:207617923..207617929, -
1.1e-59FFCP PHASE2:Hg19::chr4:167951727..167951732,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167951727..167951732, -
1.1e-59FFCP PHASE2:Hg19::chr9:74996801..74996811,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74996801..74996811, -
1.1e-59FFCP PHASE2:Hg19::chr8:38216859..38216889,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:38216859..38216889, -
1.1e-59FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148293141..148293150, +
1.1e-59FFCP PHASE2:Hg19::chr19:53510877..53510886,+#_f1700f6fa279d66bc6746540ac32fc48p2@uc002qao.2
1.1e-59FFCP PHASE2:Hg19::chr14:76017386..76017395,-#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76017386..76017395, -
1.1e-59FFCP PHASE2:Hg19::chr6:135486309..135486312,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:135486309..135486312, +
1.1e-59FFCP PHASE2:Hg19::chr10:120921294..120921306,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921294..120921306, -
1.1e-59FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:212870782..212870788, -
1.1e-59FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119279086..119279095, +
1.1e-59FFCP PHASE1:Hg19::chr4:6191002..6191007,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:6191002..6191007, -
1.1e-59FFCP PHASE1:Hg19::chr12:77198556..77198565,+#_f1700f6fa279d66bc6746540ac32fc48p@chr12:77198556..77198565, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216568..228216578,+#_f1700f6fa279d66bc6746540ac32fc48p15@MFF
1.1e-59FFCP PHASE1:Hg19::chr7:106397647..106397655,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106397647..106397655, +
1.1e-59FFCP PHASE2:Hg19::chr6:88854777..88854802,-#_f1700f6fa279d66bc6746540ac32fc48p16@CNR1
1.1e-59FFCP PHASE1:Hg19::chr3:169775687..169775690,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:169775687..169775690, -
1.1e-59FFCP PHASE1:Hg19::chr21:18179708..18179733,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18179708..18179733, -
1.1e-59FFCP PHASE2:Hg19::chr20:38442120..38442126,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:38442120..38442126, +
1.1e-59FFCP PHASE1:Hg19::chr10:61574767..61574776,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:61574767..61574776, -
1.1e-59FFCP PHASE1:Hg19::chr3:111331533..111331540,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111331533..111331540, -
1.1e-59FFCP PHASE1:Hg19::chr6:484706..484722,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:484706..484722, +
1.1e-59FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:65209811..65209818, +
1.1e-59FFCP PHASE2:Hg19::chr2:15651894..15651904,-#_f1700f6fa279d66bc6746540ac32fc48p4@NBAS
1.1e-59FFCP PHASE2:Hg19::chr4:167748986..167748989,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167748986..167748989, -
1.1e-59FFCP PHASE2:Hg19::chr10:15035430..15035449,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:15035430..15035449, -
1.1e-59FFCP PHASE1:Hg19::chr10:120921294..120921306,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921294..120921306, -
1.1e-59FFCP PHASE2:Hg19::chr9:94933452..94933457,+#_f1700f6fa279d66bc6746540ac32fc48p@chr9:94933452..94933457, +
1.1e-59FFCP PHASE2:Hg19::chr3:45926344..45926350,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926344..45926350, -
1.1e-59FFCP PHASE1:Hg19::chr19:53510877..53510886,+#_f1700f6fa279d66bc6746540ac32fc48p2@uc002qao.2
1.1e-59FFCP PHASE1:Hg19::chr14:76957754..76957760,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957754..76957760, +
1.1e-59FFCP PHASE1:Hg19::chr6:135486309..135486312,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:135486309..135486312, +
1.1e-59FFCP PHASE1:Hg19::chr1:207617923..207617929,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:207617923..207617929, -
1.1e-59FFCP PHASE1:Hg19::chr4:167951727..167951732,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167951727..167951732, -
1.1e-59FFCP PHASE1:Hg19::chr9:74996801..74996811,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74996801..74996811, -
1.1e-59FFCP PHASE2:Hg19::chr2:148278743..148278751,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148278743..148278751, +
1.1e-59FFCP PHASE1:Hg19::chr3:33024873..33024877,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:33024873..33024877, -
1.1e-59FFCP PHASE2:Hg19::chr4:167982726..167982736,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167982726..167982736, -
1.1e-59FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:149464325..149464336, -
1.1e-59FFCP PHASE1:Hg19::chr2:65209811..65209818,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:65209811..65209818, +
1.1e-59FFCP PHASE1:Hg19::chr2:15651894..15651904,-#_f1700f6fa279d66bc6746540ac32fc48p4@NBAS
1.1e-59FFCP PHASE1:Hg19::chr4:167748986..167748989,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167748986..167748989, -
1.1e-59FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:129054695..129054717, -
1.1e-59FFCP PHASE1:Hg19::chr8:38216859..38216889,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:38216859..38216889, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957782..76957792,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957782..76957792, +
1.1e-59FFCP PHASE1:Hg19::chr3:119279086..119279095,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119279086..119279095, +
1.1e-59FFCP PHASE2:Hg19::chr9:74995205..74995211,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995205..74995211, -
1.1e-59FFCP PHASE1:Hg19::chr20:38442120..38442126,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:38442120..38442126, +
1.1e-59FFCP PHASE1:Hg19::chr10:15035430..15035449,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:15035430..15035449, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216837..228216846,+#_f1700f6fa279d66bc6746540ac32fc48p17@MFF
1.1e-59FFCP PHASE1:Hg19::chr16:86326031..86326033,+#_f1700f6fa279d66bc6746540ac32fc48p@chr16:86326031..86326033, +
1.1e-59FFCP PHASE1:Hg19::chr2:148278743..148278751,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148278743..148278751, +
1.1e-59FFCP PHASE2:Hg19::chr7:102945487..102945492,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:102945487..102945492, +
1.1e-59FFCP PHASE1:Hg19::chr15:43323789..43323811,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323789..43323811, -
1.1e-59FFCP PHASE2:Hg19::chr19:49488921..49488932,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:49488921..49488932, -
1.1e-59FFCP PHASE1:Hg19::chr9:94933452..94933457,+#_f1700f6fa279d66bc6746540ac32fc48p@chr9:94933452..94933457, +