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UBERON:0005728

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Name:extraembryonic mesoderm
Namespace:FANTOM
Definition:"." [1]
Xrefs:
links:

EHDAA2:0000474

VHOG:0000616
Synonyms: "extra-embryonic mesoderm" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue),UBERON:0007524(dense mesenchyme tissue)
develops_from:UBERON:0003081(lateral plate mesoderm),UBERON:0008780(inner cell mass derived epiblast)
part_of:UBERON:0016887(entire extraembryonic component)



Children

develops from:UBERON:0007806 (connecting stalk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005728 (extraembryonic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr6:138023078..138023089,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:138023078..138023089, -
1.1e-59FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119281371..119281382, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216610..228216617,+#_f1700f6fa279d66bc6746540ac32fc48p18@MFF
1.1e-59FFCP PHASE1:Hg19::chr2:228216588..228216609,+#_f1700f6fa279d66bc6746540ac32fc48p10@MFF
1.1e-59FFCP PHASE1:Hg19::chr20:39574012..39574015,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:39574012..39574015, +
1.1e-59FFCP PHASE2:Hg19::chr7:135705366..135705371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705366..135705371, +
1.1e-59FFCP PHASE1:Hg19::chr2:148279057..148279078,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148279057..148279078, +
1.1e-59FFCP PHASE1:Hg19::chr1:177159780..177159790,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:177159780..177159790, -
1.1e-59FFCP PHASE2:Hg19::chr4:167791926..167791930,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167791926..167791930, -
1.1e-59FFCP PHASE1:Hg19::chr3:111311854..111311862,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111311854..111311862, -
1.1e-59FFCP PHASE1:Hg19::chr7:142250880..142250889,-#_f1700f6fa279d66bc6746540ac32fc48p4@AF430683, p4@AF430684, p4@AF430685
1.1e-59FFCP PHASE2:Hg19::chr13:101999642..101999655,-#_f1700f6fa279d66bc6746540ac32fc48p@chr13:101999642..101999655, -
1.1e-59FFCP PHASE1:Hg19::chr4:167983163..167983209,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167983163..167983209, -
1.1e-59FFCP PHASE2:Hg19::chr3:45926401..45926410,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926401..45926410, -
1.1e-59FFCP PHASE1:Hg19::chr3:195306394..195306429,-#_f1700f6fa279d66bc6746540ac32fc48p5@APOD
1.1e-59FFCP PHASE2:Hg19::chr12:130530117..130530125,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:130530117..130530125, -
1.1e-59FFCP PHASE1:Hg19::chr3:45926373..45926388,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926373..45926388, -
1.1e-59FFCP PHASE2:Hg19::chr19:42682242..42682253,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:42682242..42682253, -
1.1e-59FFCP PHASE1:Hg19::chr19:3149800..3149805,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:3149800..3149805, +
1.1e-59FFCP PHASE1:Hg19::chr1:234765107..234765117,+#_f1700f6fa279d66bc6746540ac32fc48p7@LINC00184
1.1e-59FFCP PHASE1:Hg19::chr7:106363986..106363994,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363986..106363994, -
1.1e-59FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148282641..148282654, +
1.1e-59FFCP PHASE2:Hg19::chr19:7599792..7599797,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:7599792..7599797, +
1.1e-59FFCP PHASE2:Hg19::chr15:43323772..43323785,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323772..43323785, -
1.1e-59FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135735084..135735112, +
1.1e-59FFCP PHASE1:Hg19::chr4:167932279..167932291,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167932279..167932291, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995216..74995247,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995216..74995247, -
1.1e-59FFCP PHASE2:Hg19::chr3:195306434..195306439,-#_f1700f6fa279d66bc6746540ac32fc48p10@APOD
1.1e-59FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_f1700f6fa279d66bc6746540ac32fc48p@chr11:128154946..128154955, +
1.1e-59FFCP PHASE1:Hg19::chr3:189266272..189266296,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:189266272..189266296, -
1.1e-59FFCP PHASE2:Hg19::chr8:56618992..56618998,+#_f1700f6fa279d66bc6746540ac32fc48p@chr8:56618992..56618998, +
1.1e-59FFCP PHASE2:Hg19::chr6:149490934..149490939,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:149490934..149490939, -
1.1e-59FFCP PHASE2:Hg19::chr5:28145264..28145272,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:28145264..28145272, -
1.1e-59FFCP PHASE2:Hg19::chr19:31524425..31524444,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:31524425..31524444, -
1.1e-59FFCP PHASE1:Hg19::chr19:10983266..10983276,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:10983266..10983276, -
1.1e-59FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:109653507..109653518, +
1.1e-59FFCP PHASE2:Hg19::chr7:106397597..106397610,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106397597..106397610, +
1.1e-59FFCP PHASE2:Hg19::chr1:168204286..168204299,+#_f1700f6fa279d66bc6746540ac32fc48p@chr1:168204286..168204299, +
1.1e-59FFCP PHASE2:Hg19::chr14:76957827..76957835,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957827..76957835, +
1.1e-59FFCP PHASE1:Hg19::chr14:76017386..76017395,-#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76017386..76017395, -
1.1e-59FFCP PHASE2:Hg19::chr21:18170731..18170736,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18170731..18170736, -
1.1e-59FFCP PHASE2:Hg19::chr4:167938808..167938815,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167938808..167938815, -
1.1e-59FFCP PHASE2:Hg19::chr9:74995293..74995311,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995293..74995311, -
1.1e-59FFCP PHASE2:Hg19::chr19:10987850..10987854,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:10987850..10987854, +
1.1e-59FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:17543537..17543548, -
1.1e-59FFCP PHASE2:Hg19::chr10:120924761..120924770,-#_f1700f6fa279d66bc6746540ac32fc48p10@SFXN4
1.1e-59FFCP PHASE2:Hg19::chr1:234631379..234631392,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:234631379..234631392, -
1.1e-59FFCP PHASE1:Hg19::chrX:10129292..10129306,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:10129292..10129306, +
1.1e-59FFCP PHASE1:Hg19::chr3:75655787..75655802,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:75655787..75655802, -
1.1e-59FFCP PHASE2:Hg19::chr7:135738522..135738525,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135738522..135738525, -
1.1e-59FFCP PHASE1:Hg19::chr2:148296759..148296767,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148296759..148296767, +
1.1e-59FFCP PHASE1:Hg19::chr21:18180040..18180058,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18180040..18180058, -
1.1e-59FFCP PHASE1:Hg19::chr10:120921395..120921406,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921395..120921406, -
1.1e-59FFCP PHASE2:Hg19::chr6:87324188..87324195,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324188..87324195, +
1.1e-59FFCP PHASE1:Hg19::chr6:491208..491217,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:491208..491217, -
1.1e-59FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324164..87324175, +
1.1e-59FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:59970765..59970787, -
1.1e-59FFCP PHASE1:Hg19::chr13:102271725..102271736,+#_f1700f6fa279d66bc6746540ac32fc48p@chr13:102271725..102271736, +
1.1e-59FFCP PHASE1:Hg19::chr2:53245239..53245255,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:53245239..53245255, -
1.1e-59FFCP PHASE1:Hg19::chr1:172807491..172807499,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:172807491..172807499, -
1.1e-59FFCP PHASE1:Hg19::chr3:180050773..180050786,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:180050773..180050786, +
1.1e-59FFCP PHASE1:Hg19::chr1:207627342..207627349,+#_f1700f6fa279d66bc6746540ac32fc48p3@CR2
1.1e-59FFCP PHASE1:Hg19::chr4:167957459..167957470,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167957459..167957470, -
1.1e-59FFCP PHASE1:Hg19::chr9:75001932..75001956,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:75001932..75001956, -
1.1e-59FFCP PHASE2:Hg19::chr22:37484379..37484392,+#_f1700f6fa279d66bc6746540ac32fc48p@chr22:37484379..37484392, +
1.1e-59FFCP PHASE2:Hg19::chr6:150322254..150322291,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:150322254..150322291, -
1.1e-59FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:22771722..22771733, +
1.1e-59FFCP PHASE1:Hg19::chr10:31996512..31996530,-#_f1700f6fa279d66bc6746540ac32fc48p5@ENST00000433770
1.1e-59FFCP PHASE2:Hg19::chr17:64034078..64034124,-#_f1700f6fa279d66bc6746540ac32fc48p@chr17:64034078..64034124, -
1.1e-59FFCP PHASE1:Hg19::chr20:22771662..22771675,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:22771662..22771675, +
1.1e-59FFCP PHASE2:Hg19::chr5:77713534..77713543,+#_f1700f6fa279d66bc6746540ac32fc48p@chr5:77713534..77713543, +
1.1e-59FFCP PHASE1:Hg19::chr12:130530117..130530125,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:130530117..130530125, -
1.1e-59FFCP PHASE1:Hg19::chr17:64034078..64034124,-#_f1700f6fa279d66bc6746540ac32fc48p@chr17:64034078..64034124, -
1.1e-59FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363860..106363870, -
1.1e-59FFCP PHASE1:Hg19::chr19:53511749..53511757,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511749..53511757, -
1.1e-59FFCP PHASE1:Hg19::chr14:76957782..76957792,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957782..76957792, +
1.1e-59FFCP PHASE2:Hg19::chr21:18180062..18180079,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18180062..18180079, -
1.1e-59FFCP PHASE2:Hg19::chr11:90524493..90524505,+#_f1700f6fa279d66bc6746540ac32fc48p@chr11:90524493..90524505, +
1.1e-59FFCP PHASE1:Hg19::chr4:167791926..167791930,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167791926..167791930, -
1.1e-59FFCP PHASE2:Hg19::chr9:75002215..75002221,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:75002215..75002221, -
1.1e-59FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_f1700f6fa279d66bc6746540ac32fc48p6@VDAC3
1.1e-59FFCP PHASE2:Hg19::chr11:117957610..117957619,-#_f1700f6fa279d66bc6746540ac32fc48p3@LOC100526771
1.1e-59FFCP PHASE2:Hg19::chr19:18603318..18603327,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:18603318..18603327, -
1.1e-59FFCP PHASE1:Hg19::chr3:119281371..119281382,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119281371..119281382, -
1.1e-59FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_f1700f6fa279d66bc6746540ac32fc48p42@IGFBP3
1.1e-59FFCP PHASE2:Hg19::chr2:45063061..45063082,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:45063061..45063082, -
1.1e-59FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363901..106363915, -
1.1e-59FFCP PHASE2:Hg19::chr2:11264766..11264775,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:11264766..11264775, -
1.1e-59FFCP PHASE2:Hg19::chr6:31150998..31151005,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:31150998..31151005, -
1.1e-59FFCP PHASE2:Hg19::chr19:53511768..53511784,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511768..53511784, -
1.1e-59FFCP PHASE2:Hg19::chr3:157301317..157301362,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:157301317..157301362, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957754..76957760,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957754..76957760, +
1.1e-59FFCP PHASE2:Hg19::chr6:135486487..135486491,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:135486487..135486491, +
1.1e-59FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705366..135705371, +