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Difference between revisions of "UBERON:0000915"

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<div style="width:320px;height:320px;float:right;">
 
<img width=320 height=320 src="http://lifesciencedb.jp/bp3d/icon.cgi?i=FMA9576&p=front&v=3%2e0&t=conventional&c=1&m=bp3d&s=L">
 
<div align="right"> from <a href="http://lifesciencedb.jp/bp3d/">BodyParts3D</a></div>
 
</div>
 
</html>
 
 
 
{{UBERON
 
{{UBERON
|id=UBERON:0000915
+
|<html><div style="width:320px;height:320px;float:right;"><img width
|name=thoracic segment of trunk
+
|alt_id=UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
|namespace=
+
|anatomical_img_id=FMA:9576
|def="Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
 
|xref=FMA:259209;;MA:0000022;;SCTID:302551006
 
|is_a=UBERON:0009569
 
|synonym="thorax" RELATED [MA:0000022];;"upper body" RELATED []
 
 
|comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest
 
|comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest
|alt_id=UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
|subset=uberon_slim
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|is_a=UBERON:0009569
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=thoracic segment of trunk
 +
|namespace=
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417
|is_obsolete=
+
|subset=uberon_slim
|preceded_by=
+
|synonym="thorax" RELATED [MA:0000022];;"upper body" RELATED []
 +
|union_of=
 +
|xref=FMA:259209;;MA:0000022;;SCTID:302551006
 
}}
 
}}

Revision as of 09:36, 29 November 2012

Name:thoracic segment of trunk
Definition:"Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
Xrefs:
links:

FMA:259209
MA:0000022

SCTID:302551006
Synonyms: "thorax" RELATED [MA:0000022]
"upper body" RELATED []
Comments:Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest
Alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0009569(subdivision of trunk)



Children

part of:UBERON:0001103 (diaphragm),UBERON:0001443 (chest),UBERON:0001515 (thoracic aorta),UBERON:0001533 (subclavian artery),UBERON:0002224 (thoracic cavity),UBERON:0003830 (thoracic segment muscle),UBERON:0003834 (thoracic segment blood vessel),UBERON:0005178 (thoracic cavity element),UBERON:0005181 (thoracic segment organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} (thoracic segment of trunk), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


No analysis results