UBERON:0002757: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=regional part of epithalamus | |name=regional part of epithalamus | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001899 | |part_of=UBERON:0001899 | ||
Latest revision as of 17:34, 12 September 2014
| Name: | regional part of epithalamus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical structure of brain of epithalamus" EXACT [OBOL:automatic] "biological structure of brain of epithalamus" EXACT [OBOL:automatic] "brain anatomical structure of epithalamus" EXACT [OBOL:automatic] "brain biological structure of epithalamus" EXACT [OBOL:automatic] "epithalamus anatomical structure of brain" EXACT [OBOL:automatic] "epithalamus biological structure of brain" EXACT [OBOL:automatic] "epithalamus brain anatomical structure" EXACT [OBOL:automatic] "epithalamus brain biological structure" EXACT [OBOL:automatic] "epithalamus neuraxis segment" EXACT [OBOL:automatic] "epithalamus regional part of brain" EXACT [OBOL:automatic] "epithalamus segment" EXACT [FMA:62013] "epithalamus segment of brain" EXACT [OBOL:automatic] "neuraxis segment of epithalamus" EXACT [OBOL:automatic] "regional part of brain of epithalamus" EXACT [OBOL:automatic] "segment of brain of epithalamus" EXACT [OBOL:automatic] "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607] | ||
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002784(regional part of diencephalon) |
|---|---|
| part_of: | UBERON:0001899(epithalamus) |
Children
| is a: | UBERON:0001905 (pineal body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002757 (regional part of epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:92310419..92310432, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:107545606..107545631, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:99860753..99860764,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:99860753..99860764, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473063..135473075, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:55422565..55422604, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:129084265..129084288, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9194488..9194491,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:9194488..9194491, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504353..135504365, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18066399..18066411, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18040537..18040547,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18040537..18040547, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:137539895..137539904, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:99033417..99033423,+#_9fff67266e304a13f2133c4d8e21ddbe | p17@MATN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:9782665..9782674, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:21399081..21399087, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_9fff67266e304a13f2133c4d8e21ddbe | p11@SRRM3 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:81859007..81859036, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:32468385..32468392,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:32468385..32468392, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:17930871..17930877, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57907030..57907050, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_9fff67266e304a13f2133c4d8e21ddbe | p10@CNGB3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_9fff67266e304a13f2133c4d8e21ddbe | p11@CABP1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18067959..18067962,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18067959..18067962, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_9fff67266e304a13f2133c4d8e21ddbe | p2@ENST00000414895 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:57975398..57975401,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57975398..57975401, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_9fff67266e304a13f2133c4d8e21ddbe | p9@PRR16 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:74951707..74951719,+#_9fff67266e304a13f2133c4d8e21ddbe | p9@LOC100507050 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:50898038..50898042,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:50898038..50898042, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135473748..135473753,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473748..135473753, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:1210506..1210513, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr18:56963107..56963117, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_9fff67266e304a13f2133c4d8e21ddbe | p3@NEUROG1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:84530787..84530803,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:84530787..84530803, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:99860786..99860791, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:52650541..52650548,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:52650541..52650548, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:92310419..92310432, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17185712..17185735,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17185712..17185735, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr4:1188439..1188454, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:55422858..55422866, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr14:57197193..57197194,-#_9fff67266e304a13f2133c4d8e21ddbe | p1@ENST00000554597 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:15134610..15134617, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:54952462..54952471,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:54952462..54952471, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18041244..18041266, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17075761..17075773,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17075761..17075773, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:54952420..54952425, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:99033417..99033423,+#_9fff67266e304a13f2133c4d8e21ddbe | p17@MATN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr18:56962131..56962138,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr18:56962131..56962138, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:135732714..135732721,-#_9fff67266e304a13f2133c4d8e21ddbe | p2@ENST00000514282 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:100942376..100942381, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504405..135504410, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:51175701..51175708,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:51175701..51175708, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:18066319..18066337,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18066319..18066337, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:121088132..121088135,+#_9fff67266e304a13f2133c4d8e21ddbe | p15@CABP1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:18066345..18066365,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18066345..18066365, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18041199..18041200,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18041199..18041200, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:136699666..136699696,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr5:136699666..136699696, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18067904..18067908,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18067904..18067908, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr6:33087873..33087886, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:17064630..17064651,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17064630..17064651, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:136328601..136328607,-#_9fff67266e304a13f2133c4d8e21ddbe | p25@SPOCK1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:87755845..87755852,-#_9fff67266e304a13f2133c4d8e21ddbe | p6@CNGB3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr4:20985690..20985695,-#_9fff67266e304a13f2133c4d8e21ddbe | p38@KCNIP4 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:99734965..99734976,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:99734965..99734976, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:119799576..119799585,+#_9fff67266e304a13f2133c4d8e21ddbe | p10@PRR16 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_9fff67266e304a13f2133c4d8e21ddbe | p3@WNT16 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18063707..18063720,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18063707..18063720, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:56628548..56628553, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:57907030..57907050,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57907030..57907050, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:108616342..108616384,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:108616342..108616384, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:25264978..25265001,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:25264978..25265001, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:45782001..45782009,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:45782001..45782009, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_9fff67266e304a13f2133c4d8e21ddbe | p9@LOC100507050 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr10:18580269..18580290,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr10:18580269..18580290, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:216447425..216447432,-#_9fff67266e304a13f2133c4d8e21ddbe | p2@ENST00000457625 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:6956383..6956390,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:6956383..6956390, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:84530787..84530803, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:72297712..72297715,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:72297712..72297715, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:99860786..99860791,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:99860786..99860791, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:55422858..55422866,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:55422858..55422866, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:101038595..101038604,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:101038595..101038604, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135520309..135520324,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135520309..135520324, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135504405..135504410,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504405..135504410, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_9fff67266e304a13f2133c4d8e21ddbe | p4@AANAT |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135472861..135472868, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:13820103..13820109,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:13820103..13820109, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr6:13009334..13009341,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr6:13009334..13009341, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:60826120..60826127, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57914395..57914398, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:18036005..18036011,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18036005..18036011, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:87755845..87755852,-#_9fff67266e304a13f2133c4d8e21ddbe | p6@CNGB3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_9fff67266e304a13f2133c4d8e21ddbe | p15@CABP1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18039672..18039678, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:128170725..128170735,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:128170725..128170735, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_9fff67266e304a13f2133c4d8e21ddbe | p4@CHRNB2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:44903714..44903719,+#_9fff67266e304a13f2133c4d8e21ddbe | p8@CAMKMT |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:52650486..52650491, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr17:55484129..55484139,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr17:55484129..55484139, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:192894664..192894677,-#_9fff67266e304a13f2133c4d8e21ddbe | p1@ENST00000414895 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:50898038..50898042,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:50898038..50898042, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:119868809..119868839,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr5:119868809..119868839, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr10:80984180..80984190, - |
