UBERON:0005068: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0005068
|name=neural rod
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|def="a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross sectio...") |
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Revision as of 17:21, 15 June 2012
| Name: | neural rod | ||
|---|---|---|---|
| Definition: | "a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133] | ||
| Xrefs: |
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0002346(neurectoderm),UBERON:0007135(neural keel) |
| part_of: | UBERON:0000922(embryo) |
Children
| develops from: | UBERON:0001049 (neural tube) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005068 (neural rod), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.5e-145 | FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_23d573ed248cde2f100556f22aa3804e | p2@RFX4 |
| 9.5e-145 | FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_23d573ed248cde2f100556f22aa3804e | p2@RFX4 |
| 4.41e-144 | FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_b7d4f5f0361092816221d6f1ddb1a1d4 | p@chr5:87439352..87439386, - |
| 4.41e-144 | FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_b7d4f5f0361092816221d6f1ddb1a1d4 | p@chr5:87439352..87439386, - |
| 5.06e-144 | FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_2ccc850bbc21cdb12fbd59f35ba0eaae | p1@ENST00000412957 |
| 5.06e-144 | FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_2ccc850bbc21cdb12fbd59f35ba0eaae | p1@ENST00000412957 |
| 1.1e-143 | FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_357e842d159a347c18e30a367a599021 | p3@CTNND2 |
| 1.1e-143 | FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_357e842d159a347c18e30a367a599021 | p3@CTNND2 |
| 1.17e-142 | FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_4d1f0782576b77e22427afc808b922f7 | p2@GABRG1 |
| 1.17e-142 | FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_4d1f0782576b77e22427afc808b922f7 | p2@GABRG1 |
| 2.68e-142 | FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_b4e9fc97bf4d950be9f1198cd94b7245 | p3@NRXN1 |
| 2.68e-142 | FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_b4e9fc97bf4d950be9f1198cd94b7245 | p3@NRXN1 |
| 1.04e-141 | FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_cf2317d562151187f1d7caaceb3c4bb5 | p4@APC |
| 1.04e-141 | FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_cf2317d562151187f1d7caaceb3c4bb5 | p4@APC |
| 1.18e-141 | FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_ba05abb3985828bf7165dd418d48e757 | p8@CTNND2 |
| 1.18e-141 | FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_ba05abb3985828bf7165dd418d48e757 | p8@CTNND2 |
| 7.98e-141 | FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_d50a37c232455b053a2dcffe2fd90a04 | p7@DTNA |
| 7.98e-141 | FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_d50a37c232455b053a2dcffe2fd90a04 | p7@DTNA |
| 1.0e-140 | FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_8e8ca80a51c9023e14887e681399d289 | p2@KCNJ16 |
| 1.0e-140 | FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_8e8ca80a51c9023e14887e681399d289 | p2@KCNJ16 |
| 2.58e-140 | FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_debc94d0b6961e0778cb86a0066605dc | p@chr5:146314142..146314146, - |
| 2.58e-140 | FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_debc94d0b6961e0778cb86a0066605dc | p@chr5:146314142..146314146, - |
| 1.46e-139 | FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_34a60db80c7374229f6f0e589094063e | p1@RFX4 |
| 1.46e-139 | FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_34a60db80c7374229f6f0e589094063e | p1@RFX4 |
| 9.16e-139 | FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_99f9ec0ceb1abe46d250730d31b22cea | p4@RFX4 |
| 9.16e-139 | FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_99f9ec0ceb1abe46d250730d31b22cea | p4@RFX4 |
| 1.47e-138 | FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_0b05f49541a2927a77055de994e34d8a | p9@PRKACB |
| 1.47e-138 | FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_0b05f49541a2927a77055de994e34d8a | p9@PRKACB |
| 4.62e-138 | FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_23f4432fb834e9af2e9377f26ea304df | p2@CTNND2 |
| 4.62e-138 | FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_23f4432fb834e9af2e9377f26ea304df | p2@CTNND2 |
| 1.71e-137 | FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_961f445ef687d429e7622d3ca40c09b4 | p@chr15:46702499..46702523, + |
| 1.71e-137 | FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_961f445ef687d429e7622d3ca40c09b4 | p@chr15:46702499..46702523, + |
| 5.75e-137 | FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_610bb8d2ea6bdd19cd3913b7efc0c4f8 | p17@PRKACB |
| 5.75e-137 | FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_610bb8d2ea6bdd19cd3913b7efc0c4f8 | p17@PRKACB |
| 6.55e-137 | FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_09c9b693a53b86e4336c08d859bee7ee | p17@NTRK2 |
| 6.55e-137 | FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_09c9b693a53b86e4336c08d859bee7ee | p17@NTRK2 |
| 8.93e-137 | FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_aa3c9bd945ced562282502fcfe942085 | p@chr6:80131670..80131724, + |
| 8.93e-137 | FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_aa3c9bd945ced562282502fcfe942085 | p@chr6:80131670..80131724, + |
| 2.51e-136 | FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_89e3ab1cfba02d9e6707add2e64663c2 | p4@SLC1A2 |
| 2.51e-136 | FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_89e3ab1cfba02d9e6707add2e64663c2 | p4@SLC1A2 |
| 2.84e-136 | FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_b2f39fb21cacb489f17b780a09acad03 | p1@ATP10B |
| 2.84e-136 | FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_b2f39fb21cacb489f17b780a09acad03 | p1@ATP10B |
| 3.14e-136 | FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_610ddf882562e9c0dd24bc3e33f4c191 | p8@PRKCZ |
| 3.14e-136 | FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_610ddf882562e9c0dd24bc3e33f4c191 | p8@PRKCZ |
| 4.26e-136 | FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_726066f14073866f1c70f441798a6689 | p9@GPM6B |
| 4.26e-136 | FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_726066f14073866f1c70f441798a6689 | p9@GPM6B |
| 5.24e-136 | FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_78c547fa3822dd0e31325d03548e6e8f | p5@AQP4 |
| 5.24e-136 | FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_78c547fa3822dd0e31325d03548e6e8f | p5@AQP4 |
| 5.54e-136 | FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_67c67c723df3ea9c520ca35399b998f6 | p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343 |
| 5.54e-136 | FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_67c67c723df3ea9c520ca35399b998f6 | p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343 |
| 9.78e-136 | FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_93f22949b27e5985aafe6ab7797af660 | p8@DST |
| 9.78e-136 | FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_93f22949b27e5985aafe6ab7797af660 | p8@DST |
| 1.52e-135 | FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_d2314a3eb679f0c56a486db8f105a452 | p@chr7:47420733..47420758, - |
| 1.52e-135 | FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_d2314a3eb679f0c56a486db8f105a452 | p@chr7:47420733..47420758, - |
| 2.32e-135 | FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_3a61d74830ff1952e11c15a4ad59d549 | p1@ANKFN1 |
| 2.32e-135 | FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_3a61d74830ff1952e11c15a4ad59d549 | p1@ANKFN1 |
| 3.21e-135 | FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_f002f35eb4d523c91c26b6b7643affea | p1@GABRG1 |
| 3.21e-135 | FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_f002f35eb4d523c91c26b6b7643affea | p1@GABRG1 |
| 5.25e-135 | FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_dbdd7389c6529437cea7faaaba215bd4 | p@chr17:7558857..7558903, + |
| 5.25e-135 | FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_dbdd7389c6529437cea7faaaba215bd4 | p@chr17:7558857..7558903, + |
| 8.03e-135 | FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_e9d9ef711e43f3735e32454d2b6302c3 | p3@SFXN5 |
| 8.03e-135 | FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_e9d9ef711e43f3735e32454d2b6302c3 | p3@SFXN5 |
| 1.91e-134 | FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_68e3d076a3957590dd7385e4d399ad35 | p3@GABRG1 |
| 1.91e-134 | FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_68e3d076a3957590dd7385e4d399ad35 | p3@GABRG1 |
| 2.97e-134 | FFCP PHASE2:Hg19::chr18:32398400..32398416,+#_ccd2384be8a635b8e3cf5d2a67388c1a | p10@DTNA |
| 2.97e-134 | FFCP PHASE1:Hg19::chr18:32398400..32398416,+#_ccd2384be8a635b8e3cf5d2a67388c1a | p10@DTNA |
| 4.25e-134 | FFCP PHASE2:Hg19::chr18:32398372..32398394,+#_336ace92a71c611d91889888dd747309 | p5@DTNA |
| 4.25e-134 | FFCP PHASE1:Hg19::chr18:32398372..32398394,+#_336ace92a71c611d91889888dd747309 | p5@DTNA |
| 4.84e-134 | FFCP PHASE1:Hg19::chr17:42989121..42989166,-#_987384af4e4fd8ff2a627eeb1a2ab85b | p7@GFAP |
| 4.84e-134 | FFCP PHASE2:Hg19::chr17:42989121..42989166,-#_987384af4e4fd8ff2a627eeb1a2ab85b | p7@GFAP |
| 5.15e-134 | FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_33c6201aa54432b6a36f6b752c4d17a1 | p2@PAQR6 |
| 5.15e-134 | FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_33c6201aa54432b6a36f6b752c4d17a1 | p2@PAQR6 |
| 1.37e-133 | FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_00acd0d7fa075e04471f5bdd639a4c46 | p2@uc002fch.1 |
| 1.37e-133 | FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_00acd0d7fa075e04471f5bdd639a4c46 | p2@uc002fch.1 |
| 1.42e-133 | FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_a9c796f72c8d98f2a09e59a248e2944b | p2@SRCIN1 |
| 1.42e-133 | FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_a9c796f72c8d98f2a09e59a248e2944b | p2@SRCIN1 |
| 1.45e-133 | FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_0563ac877abef115b3b1baca99cb7562 | p4@ARHGEF26-AS1 |
| 1.45e-133 | FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_0563ac877abef115b3b1baca99cb7562 | p4@ARHGEF26-AS1 |
| 2.38e-133 | FFCP PHASE2:Hg19::chr12:41221684..41221704,+#_e5452db34c28560978dded320e715358 | p5@CNTN1 |
| 2.38e-133 | FFCP PHASE1:Hg19::chr12:41221684..41221704,+#_e5452db34c28560978dded320e715358 | p5@CNTN1 |
| 2.91e-133 | FFCP PHASE1:Hg19::chr5:11384929..11384947,-#_f6e92ad9fa932fb83bff952837441bb6 | p15@CTNND2 |
| 2.91e-133 | FFCP PHASE2:Hg19::chr5:11384929..11384947,-#_f6e92ad9fa932fb83bff952837441bb6 | p15@CTNND2 |
| 3.31e-133 | FFCP PHASE1:Hg19::chr12:57980138..57980165,+#_f292dd7777513e44e28c0dbae4751e17 | p3@KIF5A |
| 3.31e-133 | FFCP PHASE2:Hg19::chr12:57980138..57980165,+#_f292dd7777513e44e28c0dbae4751e17 | p3@KIF5A |
| 3.45e-133 | FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_d50452af7b1e63d10a1165581e4b039c | p1@GPR61 |
| 3.45e-133 | FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_d50452af7b1e63d10a1165581e4b039c | p1@GPR61 |
| 1.11e-132 | FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_97fa96589a2fc0e288ea2f92132fa9dc | p5@NKAIN3 |
| 1.11e-132 | FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_97fa96589a2fc0e288ea2f92132fa9dc | p5@NKAIN3 |
| 1.25e-132 | FFCP PHASE2:Hg19::chr15:30261066..30261096,-#_8ebaf09cb41be44aedbda7c22de7359e | p12@TJP1 |
| 1.25e-132 | FFCP PHASE1:Hg19::chr15:30261066..30261096,-#_8ebaf09cb41be44aedbda7c22de7359e | p12@TJP1 |
| 1.94e-132 | FFCP PHASE2:Hg19::chr17:7560542..7560578,+#_bb6363dd697e684d7b706e6b02ad7b45 | p4@ATP1B2 |
| 1.94e-132 | FFCP PHASE1:Hg19::chr17:7560542..7560578,+#_bb6363dd697e684d7b706e6b02ad7b45 | p4@ATP1B2 |
| 2.17e-132 | FFCP PHASE2:Hg19::chr7:29519599..29519612,+#_5e56d0b2e9cc405533f9e2b6f7e20149 | p9@CHN2 |
| 2.17e-132 | FFCP PHASE1:Hg19::chr7:29519599..29519612,+#_5e56d0b2e9cc405533f9e2b6f7e20149 | p9@CHN2 |
| 2.85e-132 | FFCP PHASE2:Hg19::chr12:102060112..102060135,+#_b1383e3da8323006144196b2441b59ef | p4@MYBPC1 |
| 2.85e-132 | FFCP PHASE1:Hg19::chr12:102060112..102060135,+#_b1383e3da8323006144196b2441b59ef | p4@MYBPC1 |
| 3.19e-132 | FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_7c08ca6be3583b12cd50d310777088cd | p1@LOC100289347 |
| 3.19e-132 | FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_7c08ca6be3583b12cd50d310777088cd | p1@LOC100289347 |
| 4.04e-132 | FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_c997819c226fb9ae381d00622716b85e | p9@MAP2 |
| 4.04e-132 | FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_c997819c226fb9ae381d00622716b85e | p9@MAP2 |
