UBERON:0001948: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001948
|name=regional part of spinal cord
|namespace=
|def=
|xref=ncithesaurus:Spinal_Cord_Part;;NIF_GrossAnatomy:birnlex_1496;;SCTID:244437008
|is_...") |
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|part_of=UBERON:0002240 | |part_of=UBERON:0002240 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:14, 15 June 2012
| Name: | regional part of spinal cord | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"spinal cord part" RELATED [] "spinal neuromere" RELATED [] "spinal neuromeres" RELATED [] | ||
| Alt_id: | UBERON:FMA_62420-ZFA_0001332 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000073(regional part of nervous system) |
|---|---|
| part_of: | UBERON:0002240(spinal cord) |
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
- 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
- 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
- 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
- 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001948 (regional part of spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_466e9453442503bf5e7ea64773733216 | p@chr11:96608388..96608420, + |
| 1.4e-86 | FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_466e9453442503bf5e7ea64773733216 | p@chr18:84268738..84268777, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_466e9453442503bf5e7ea64773733216 | p3@Prrxl1 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_466e9453442503bf5e7ea64773733216 | p3@Prrxl1 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_466e9453442503bf5e7ea64773733216 | p@chr11:96608388..96608420, + |
| 1.4e-86 | FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_466e9453442503bf5e7ea64773733216 | p@chr18:84268738..84268777, - |
| 2.95e-72 | FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_0d05651f495b354626150f2bacce439e | p6@Hoxb8 |
| 2.95e-72 | FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_0d05651f495b354626150f2bacce439e | p6@Hoxb8 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_339f1640951bea8055044a11a6321142 | p13@Grm5 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_339f1640951bea8055044a11a6321142 | p@chr11:96148092..96148105, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_339f1640951bea8055044a11a6321142 | p13@Grm5 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_339f1640951bea8055044a11a6321142 | p@chr11:96148092..96148105, + |
| 8.93e-63 | FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_ce07a7774dbeb6cd12427b74da512803 | p8@Hoxb6 |
| 8.93e-63 | FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_ce07a7774dbeb6cd12427b74da512803 | p8@Hoxb6 |
| 8.93e-63 | FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_ce07a7774dbeb6cd12427b74da512803 | p@chr2:74530108..74530131, + |
| 8.93e-63 | FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_ce07a7774dbeb6cd12427b74da512803 | p@chr2:74530108..74530131, + |
| 2.13e-62 | FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_82a4109a92400f72bf4196866c6b471d | p5@Hoxd10 |
| 2.13e-62 | FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_82a4109a92400f72bf4196866c6b471d | p5@Hoxd10 |
| 5.81e-56 | FFCP PHASE2:Mm9::chr5:77527885..77527900,+#_3dd0c4180d04159e450fc84c827a1ef7 | p@chr5:77527885..77527900, + |
| 5.81e-56 | FFCP PHASE1:Mm9::chr5:77527885..77527900,+#_3dd0c4180d04159e450fc84c827a1ef7 | p@chr5:77527885..77527900, + |
| 1.11e-55 | FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_a3ba9d4478032e261c9f81081359f258 | p@chr2:70053872..70053879, + |
| 1.11e-55 | FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_a3ba9d4478032e261c9f81081359f258 | p@chr2:70053872..70053879, + |
| 3.21e-55 | FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_15a1611867852ccf5a32bacede08de80 | p4@Hoxb9 |
| 3.21e-55 | FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_15a1611867852ccf5a32bacede08de80 | p4@Hoxb9 |
| 1.11e-53 | FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_f5ffda1ce8f1dbe5960d4bfbe82eafa7 | p6@Slc6a5 |
| 1.11e-53 | FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_f5ffda1ce8f1dbe5960d4bfbe82eafa7 | p6@Slc6a5 |
| 1.54e-49 | FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_1baf3af639f4fda8d1e1016706ef8686 | p3@Tlx3 |
| 1.54e-49 | FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_1baf3af639f4fda8d1e1016706ef8686 | p3@Tlx3 |
| 1.94e-49 | FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_8b51807d2c3000fd153b41269eee35fd | p@chr11:96146541..96146544, + |
| 1.94e-49 | FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_8b51807d2c3000fd153b41269eee35fd | p@chr11:96146541..96146544, + |
| 6.02e-49 | FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_34e9f5d6512f64f85db39fd95dc47310 | p1@Uts2 |
| 6.02e-49 | FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_34e9f5d6512f64f85db39fd95dc47310 | p1@Uts2 |
| 6.67e-45 | FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_fd6e9aea1a83f47bb675afd9c8162985 | p1@Gbx1 |
| 6.67e-45 | FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_fd6e9aea1a83f47bb675afd9c8162985 | p@chr2:70399563..70399583, + |
| 6.67e-45 | FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_fd6e9aea1a83f47bb675afd9c8162985 | p@chr2:70399563..70399583, + |
| 6.67e-45 | FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_fd6e9aea1a83f47bb675afd9c8162985 | p1@Gbx1 |
| 1.42e-43 | FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_f04145fff659a358575569e31525c294 | p3@Slc6a5 |
| 1.42e-43 | FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_f04145fff659a358575569e31525c294 | p3@Slc6a5 |
| 8.78e-41 | FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_623291f7edd16719cd16fd838a9ff44c | p12@6330527O06Rik |
| 8.78e-41 | FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_623291f7edd16719cd16fd838a9ff44c | p12@6330527O06Rik |
| 1.06e-40 | FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_08533f46f0263997ef94c824b1d8cb42 | p1@Npff |
| 1.06e-40 | FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_08533f46f0263997ef94c824b1d8cb42 | p1@Npff |
| 2.23e-40 | FFCP PHASE2:Mm9::chr2:135885511..135885540,+#_1aac4ba83426e5a31a5a264f2f35e13a | p@chr2:135885511..135885540, + |
| 2.23e-40 | FFCP PHASE1:Mm9::chr2:135885511..135885540,+#_1aac4ba83426e5a31a5a264f2f35e13a | p@chr2:135885511..135885540, + |
| 2.32e-40 | FFCP PHASE2:Mm9::chr11:32036107..32036145,-#_df5221000b59c106272d978ba0b2a736 | p@chr11:32036107..32036145, - |
| 2.32e-40 | FFCP PHASE1:Mm9::chr11:32036107..32036145,-#_df5221000b59c106272d978ba0b2a736 | p@chr11:32036107..32036145, - |
| 5.63e-40 | FFCP PHASE1:Mm9::chr7:57165576..57165593,+#_b4a105577c7451f6f2c75d7f322b73eb | p5@Slc6a5 |
| 5.63e-40 | FFCP PHASE2:Mm9::chr7:57165576..57165593,+#_b4a105577c7451f6f2c75d7f322b73eb | p5@Slc6a5 |
| 8.14e-40 | FFCP PHASE2:Mm9::chr7:57165629..57165651,+#_67cfe5c66fd5835d4e9ab027b839dc23 | p4@Slc6a5 |
| 8.14e-40 | FFCP PHASE1:Mm9::chr7:57165629..57165651,+#_67cfe5c66fd5835d4e9ab027b839dc23 | p4@Slc6a5 |
| 9.85e-40 | FFCP PHASE2:Mm9::chr1:173090774..173090783,+#_54fa7b1ae1b4c6b71688665a495d8b51 | p@chr1:173090774..173090783, + |
| 9.85e-40 | FFCP PHASE1:Mm9::chr1:173090774..173090783,+#_54fa7b1ae1b4c6b71688665a495d8b51 | p@chr1:173090774..173090783, + |
| 3.99e-37 | FFCP PHASE1:Mm9::chr14:14286451..14286466,+#_78772f19eb40266ce13aa8ed4af193c2 | p8@Synpr |
| 3.99e-37 | FFCP PHASE2:Mm9::chr14:14286451..14286466,+#_78772f19eb40266ce13aa8ed4af193c2 | p8@Synpr |
| 7.88e-37 | FFCP PHASE1:Mm9::chr7:133967338..133967349,+#_aab84c2b399b906aa3dad4adc0a5fc20 | p@chr7:133967338..133967349, + |
| 7.88e-37 | FFCP PHASE1:Mm9::chr7:57167425..57167443,+#_aab84c2b399b906aa3dad4adc0a5fc20 | p@chr7:57167425..57167443, + |
| 7.88e-37 | FFCP PHASE2:Mm9::chr7:57167425..57167443,+#_aab84c2b399b906aa3dad4adc0a5fc20 | p@chr7:57167425..57167443, + |
| 7.88e-37 | FFCP PHASE2:Mm9::chr7:133967338..133967349,+#_aab84c2b399b906aa3dad4adc0a5fc20 | p@chr7:133967338..133967349, + |
| 1.3e-35 | FFCP PHASE1:Mm9::chr19:46407266..46407281,-#_7ae03b15b80f63471c5f94e905d71e9f | p@chr19:46407266..46407281, - |
| 1.3e-35 | FFCP PHASE2:Mm9::chr19:46407266..46407281,-#_7ae03b15b80f63471c5f94e905d71e9f | p@chr19:46407266..46407281, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr5:23665663..23665666,+#_5705b7f282c3f8e0a2db545fb94ef5bd | p@chr5:23665663..23665666, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr5:23665663..23665666,+#_5705b7f282c3f8e0a2db545fb94ef5bd | p@chr5:23665663..23665666, + |
| 8.04e-35 | FFCP PHASE1:Mm9::chr13:33175964..33175973,+#_8bc262c664a670358e7ffe6b19406ca9 | p2@Serpinb1b |
| 8.04e-35 | FFCP PHASE2:Mm9::chr13:33175964..33175973,+#_8bc262c664a670358e7ffe6b19406ca9 | p2@Serpinb1b |
| 1.65e-34 | FFCP PHASE2:Mm9::chr7:144505876..144505884,-#_5fe79acc7121a5bf2f9ae76240e126a3 | p9@Ebf3 |
| 1.65e-34 | FFCP PHASE1:Mm9::chr7:144505876..144505884,-#_5fe79acc7121a5bf2f9ae76240e126a3 | p9@Ebf3 |
| 3.63e-34 | FFCP PHASE1:Mm9::chr11:89638991..89639011,-#_e8c83b4da12fecea7c7504d60b33b323 | p1@uc007kwk.1 |
| 3.63e-34 | FFCP PHASE2:Mm9::chr11:89638991..89639011,-#_e8c83b4da12fecea7c7504d60b33b323 | p1@uc007kwk.1 |
| 7.66e-33 | FFCP PHASE1:Mm9::chr11:96160119..96160135,+#_d88a2d85397d8153bea68dc8ef3147d4 | p7@Hoxb6 |
| 7.66e-33 | FFCP PHASE2:Mm9::chr11:96160119..96160135,+#_d88a2d85397d8153bea68dc8ef3147d4 | p7@Hoxb6 |
| 1.2e-32 | FFCP PHASE1:Mm9::chr11:33103600..33103611,-#_c4594ce049ce1e29997c919d0113fae3 | p2@Tlx3 |
| 1.2e-32 | FFCP PHASE2:Mm9::chr11:33103600..33103611,-#_c4594ce049ce1e29997c919d0113fae3 | p2@Tlx3 |
| 1.86e-32 | FFCP PHASE2:Mm9::chr11:96144337..96144354,+#_849b5cc2c0f92f5e6316564b954a7110 | p@chr11:96144337..96144354, + |
| 1.86e-32 | FFCP PHASE1:Mm9::chr11:96144337..96144354,+#_849b5cc2c0f92f5e6316564b954a7110 | p@chr11:96144337..96144354, + |
| 2.16e-32 | FFCP PHASE1:Mm9::chr15:102767273..102767285,+#_a075e4a38ad51fc497dc3e89bdf4a53d | p2@Hoxc12 |
| 2.16e-32 | FFCP PHASE2:Mm9::chr15:102767273..102767285,+#_a075e4a38ad51fc497dc3e89bdf4a53d | p2@Hoxc12 |
| 2.5e-32 | FFCP PHASE2:Mm9::chr10:57505309..57505327,+#_5ea5a4d648fb4b046f85e52c7bf754b2 | p@chr10:57505309..57505327, + |
| 2.5e-32 | FFCP PHASE1:Mm9::chr10:57505309..57505327,+#_5ea5a4d648fb4b046f85e52c7bf754b2 | p@chr10:57505309..57505327, + |
| 3.68e-32 | FFCP PHASE2:Mm9::chr12:47797986..47798011,-#_f43786370002728857d0ba47157257f7 | p@chr12:47797986..47798011, - |
| 3.68e-32 | FFCP PHASE1:Mm9::chr12:47797986..47798011,-#_f43786370002728857d0ba47157257f7 | p@chr12:47797986..47798011, - |
| 5.98e-32 | FFCP PHASE2:Mm9::chr10:101630272..101630276,+#_ebf3927d2ea5cdc7123034417337f02e | p@chr10:101630272..101630276, + |
| 5.98e-32 | FFCP PHASE1:Mm9::chr10:101630272..101630276,+#_ebf3927d2ea5cdc7123034417337f02e | p@chr10:101630272..101630276, + |
| 7.61e-32 | FFCP PHASE1:Mm9::chr11:33103551..33103561,-#_e570fab8427b17a9bcc321084ef53a2e | p4@Tlx3 |
| 7.61e-32 | FFCP PHASE2:Mm9::chr11:33103551..33103561,-#_e570fab8427b17a9bcc321084ef53a2e | p4@Tlx3 |
| 9.32e-32 | FFCP PHASE2:Mm9::chr19:46407289..46407300,-#_46e66abbd6b079d42fb85278769649c3 | p@chr19:46407289..46407300, - |
| 9.32e-32 | FFCP PHASE1:Mm9::chr19:46407289..46407300,-#_46e66abbd6b079d42fb85278769649c3 | p@chr19:46407289..46407300, - |
| 1.45e-31 | FFCP PHASE2:Mm9::chr15:99602962..99602973,-#_ff56ed71d4e7ea2dd777cbbfa496605d | p4@Lass5 |
| 1.45e-31 | FFCP PHASE1:Mm9::chr15:99602962..99602973,-#_ff56ed71d4e7ea2dd777cbbfa496605d | p4@Lass5 |
| 1.67e-31 | FFCP PHASE2:Mm9::chr1:136543278..136543288,+#_7db5f35a7245d2ecc34fb0f37c13fb30 | p5@Syt2 |
| 1.67e-31 | FFCP PHASE1:Mm9::chr1:136543278..136543288,+#_7db5f35a7245d2ecc34fb0f37c13fb30 | p5@Syt2 |
| 6.4e-31 | FFCP PHASE1:Mm9::chr15:102802660..102802666,+#_501be3160691e6eb7e1a9c35522d57a9 | p@chr15:102802660..102802666, + |
| 6.4e-31 | FFCP PHASE2:Mm9::chr15:102802660..102802666,+#_501be3160691e6eb7e1a9c35522d57a9 | p@chr15:102802660..102802666, + |
| 8.45e-31 | FFCP PHASE1:Mm9::chr6:8898608..8898619,+#_867e515b3ca696dfaf497ca86c9d1995 | p18@Nxph1 |
| 8.45e-31 | FFCP PHASE2:Mm9::chr6:8898608..8898619,+#_867e515b3ca696dfaf497ca86c9d1995 | p18@Nxph1 |
| 1.12e-30 | FFCP PHASE1:Mm9::chr3:88004192..88004201,+#_fa4d0e8b2b278b87cf5f4d9d4c51583d | p8@ENSMUST00000167043 |
| 1.12e-30 | FFCP PHASE2:Mm9::chr13:6597624..6597628,-#_fa4d0e8b2b278b87cf5f4d9d4c51583d | p2@Pfkp |
| 1.12e-30 | FFCP PHASE2:Mm9::chr3:88004192..88004201,+#_fa4d0e8b2b278b87cf5f4d9d4c51583d | p8@ENSMUST00000167043 |
| 1.12e-30 | FFCP PHASE1:Mm9::chr13:6597624..6597628,-#_fa4d0e8b2b278b87cf5f4d9d4c51583d | p2@Pfkp |
| 1.94e-30 | FFCP PHASE1:Mm9::chr7:57165482..57165497,+#_601bd6003e378bfc08eb257fe09ec040 | p2@Slc6a5 |
| 1.94e-30 | FFCP PHASE2:Mm9::chr7:57165482..57165497,+#_601bd6003e378bfc08eb257fe09ec040 | p2@Slc6a5 |
