UBERON:0003128: Difference between revisions
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|def="Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)] | |def="Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)] | ||
|xref= | |xref=BTO:0001328;;EFO:0000831;;EHDAA:6029;;FMA:71325;;MA:0000316;;MAT:0000340;;MIAA:0000340;;OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA;;SCTID:181889008;;VHOG:0000334 | ||
|is_a=UBERON: | |is_a=UBERON:0000075 | ||
|synonym="bones of cranium" EXACT [FMA:71325];;"calvarium" RELATED [BTO:0001328 | |synonym="bones of cranium" EXACT [FMA:71325];;"calvarium" RELATED [BTO:0001328];;"epicranial plate" RELATED [];;"ossa cranii" EXACT [FMA:71325, FMA:TA];;"skeletal system of head" RELATED [];;"skull minus mandible" EXACT [];;"upper part of skull" EXACT [] | ||
|comment=The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. | |comment=The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001684 | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:03, 26 June 2012
| Name: | cranium | ||
|---|---|---|---|
| Definition: | "Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)] | ||
| Xrefs: |
| ||
| Synonyms: |
"bones of cranium" EXACT [FMA:71325] "calvarium" RELATED [BTO:0001328] "epicranial plate" RELATED [] "ossa cranii" EXACT [FMA:71325, FMA:TA] "skeletal system of head" RELATED [] "skull minus mandible" EXACT [] "upper part of skull" EXACT [] | ||
| Comments: | The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000075(subdivision of skeletal system) |
|---|
Children
| part of: | UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:154693281..154693317, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr2:128881546..128881553, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_c07e35bfbcad3a9ca1580153639f40d6 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_c07e35bfbcad3a9ca1580153639f40d6 | p4@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:56208792..56208814, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_c07e35bfbcad3a9ca1580153639f40d6 | p5@Fer1l6 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_c07e35bfbcad3a9ca1580153639f40d6 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_c07e35bfbcad3a9ca1580153639f40d6 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_c07e35bfbcad3a9ca1580153639f40d6 | p5@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr5:150945209..150945220, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_c07e35bfbcad3a9ca1580153639f40d6 | p21@Espn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_c07e35bfbcad3a9ca1580153639f40d6 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_c07e35bfbcad3a9ca1580153639f40d6 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_c07e35bfbcad3a9ca1580153639f40d6 | p4@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_c07e35bfbcad3a9ca1580153639f40d6 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c07e35bfbcad3a9ca1580153639f40d6 | p5@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr16:93971325..93971337, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_c07e35bfbcad3a9ca1580153639f40d6 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_c07e35bfbcad3a9ca1580153639f40d6 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_c07e35bfbcad3a9ca1580153639f40d6 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:42206745..42206774, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_c07e35bfbcad3a9ca1580153639f40d6 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_c07e35bfbcad3a9ca1580153639f40d6 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_c07e35bfbcad3a9ca1580153639f40d6 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chrX:154140800..154140810, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_c07e35bfbcad3a9ca1580153639f40d6 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_c07e35bfbcad3a9ca1580153639f40d6 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr12:13508046..13508055, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_c07e35bfbcad3a9ca1580153639f40d6 | p10@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_c07e35bfbcad3a9ca1580153639f40d6 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_c07e35bfbcad3a9ca1580153639f40d6 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_c07e35bfbcad3a9ca1580153639f40d6 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_c07e35bfbcad3a9ca1580153639f40d6 | p3@Strc |
