CL:0000214: Difference between revisions
From FANTOM5_SSTAR
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|develops_from= | |develops_from=CL:0000134 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0002018 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:00, 27 June 2012
| Name: | synovial cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid." [GOC:tfm, ISBN:0721662544, PMID:17942474] | ||
| Xrefs: |
| ||
| Synonyms: |
"hyaluronic acid secreting cell" EXACT [] "synoviocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000153(GAG secreting cell),CL:0000213(lining cell),CL:0002078(meso-epithelial cell) |
|---|---|
| develops_from: | CL:0000134(mesenchymal cell) |
| part_of: | UBERON:0002018(synovial membrane of synovial joint) |
Children
| is a: | FF:10441-106E9 (synovial sarcoma cell line:HS-SY-II) |
|---|---|
| derives from: | FF:0000187 (human synovial cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Mouse (Mus musculus)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000214 (synovial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.24e-88 | FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_ef76c68ed56354ded4338044d804c9be | p31@SEMA3C |
| 6.24e-88 | FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_ef76c68ed56354ded4338044d804c9be | p31@SEMA3C |
| 1.71e-66 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_0b21f019f4cc1cc12e70b9a8afd28c01 | p@chr18:22150956..22150983, + |
| 1.71e-66 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_0b21f019f4cc1cc12e70b9a8afd28c01 | p@chr18:22150956..22150983, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134667..172134711, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134667..172134711, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_6140b244d689fefdf314d6b5ea14447c | p@chr2:181751144..181751146, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134736..172134739, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_6140b244d689fefdf314d6b5ea14447c | p@chr2:181751144..181751146, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_6140b244d689fefdf314d6b5ea14447c | p@chr12:130786785..130786827, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134736..172134739, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_6140b244d689fefdf314d6b5ea14447c | p9@SKOR1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134755..172134764, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_6140b244d689fefdf314d6b5ea14447c | p9@SKOR1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134755..172134764, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_6140b244d689fefdf314d6b5ea14447c | p@chr12:130786785..130786827, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_6140b244d689fefdf314d6b5ea14447c | p1@ENST00000517363 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_6140b244d689fefdf314d6b5ea14447c | p1@ENST00000517363 |
| 1.68e-53 | FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_b95317e6e7a14e57fe7f36852543ccdf | p5@CDCA2 |
| 1.68e-53 | FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_b95317e6e7a14e57fe7f36852543ccdf | p5@CDCA2 |
| 2.19e-53 | FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_01f979a418dffc96405a9f87f4c72fee | p@chr2:242009429..242009432, + |
| 2.19e-53 | FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_01f979a418dffc96405a9f87f4c72fee | p@chr2:242009429..242009432, + |
| 2.87e-53 | FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_a26dbdc4a3ec8a710916bc73583ecafb | p@chr12:131476821..131476831, - |
| 2.87e-53 | FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_a26dbdc4a3ec8a710916bc73583ecafb | p@chr12:131476821..131476831, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_2f92a96fd519d561f1f2cacd02a9f0d4 | p@chrY:58884631..58884640, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_2f92a96fd519d561f1f2cacd02a9f0d4 | p@chrY:58884631..58884640, + |
| 1.8e-38 | FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_e4f69b197aa3e5ef0574dc0219ea67e4 | p@chr1:142537706..142537723, - |
| 1.8e-38 | FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_e4f69b197aa3e5ef0574dc0219ea67e4 | p@chr1:142537706..142537723, - |
| 1.85e-36 | FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_6cb3971f67cb61af355ea2d132ae25c1 | p@chr10:131634104..131634108, - |
| 1.85e-36 | FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_6cb3971f67cb61af355ea2d132ae25c1 | p@chr10:131634104..131634108, - |
| 3.33e-34 | FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_3fc2eebfa3206d85bf499322b70897c1 | p@chr17:9066265..9066271, + |
| 3.33e-34 | FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_3fc2eebfa3206d85bf499322b70897c1 | p@chr17:9066265..9066271, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_23dde7b72d915af2a08ed788c5d0a45b | p1@LOC641364 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_23dde7b72d915af2a08ed788c5d0a45b | p1@ENST00000519738 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_23dde7b72d915af2a08ed788c5d0a45b | p5@FZD10 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_23dde7b72d915af2a08ed788c5d0a45b | p1@ENST00000519738 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr15:68118244..68118272, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr15:68118244..68118272, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr12:91435143..91435151, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_23dde7b72d915af2a08ed788c5d0a45b | p15@HOXC10 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr5:1043105..1043109, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr15:68124311..68124318, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr10:135140510..135140524, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr5:1043105..1043109, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr8:78774585..78774589, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr15:68124311..68124318, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr8:78774585..78774589, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_23dde7b72d915af2a08ed788c5d0a45b | p5@FZD10 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_23dde7b72d915af2a08ed788c5d0a45b | p15@HOXC10 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr12:91435143..91435151, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_23dde7b72d915af2a08ed788c5d0a45b | p1@LOC641364 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr10:135140510..135140524, - |
| 5.51e-34 | FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_1c36a4905930e94ecd8757c4c873da1c | p6@ACAN |
| 5.51e-34 | FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_1c36a4905930e94ecd8757c4c873da1c | p6@ACAN |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_4640f447cf663411278012509a8600a6 | p12@HOXC11 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_4640f447cf663411278012509a8600a6 | p@chr17:63705566..63705573, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_4640f447cf663411278012509a8600a6 | p@chr1:172145683..172145699, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_4640f447cf663411278012509a8600a6 | p@chr1:172145683..172145699, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_4640f447cf663411278012509a8600a6 | p@chr13:73102090..73102097, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_4640f447cf663411278012509a8600a6 | p11@C6orf132 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_4640f447cf663411278012509a8600a6 | p11@C6orf132 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_4640f447cf663411278012509a8600a6 | p@chr13:73102090..73102097, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_4640f447cf663411278012509a8600a6 | p12@HOXC11 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_4640f447cf663411278012509a8600a6 | p3@SKOR1 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_4640f447cf663411278012509a8600a6 | p3@SKOR1 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_4640f447cf663411278012509a8600a6 | p@chr17:63705566..63705573, - |
| 7.7e-34 | FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_8bbfc37a2ca11fe44c8c3bb423892cce | p@chrY:13450855..13450866, + |
| 7.7e-34 | FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_8bbfc37a2ca11fe44c8c3bb423892cce | p@chrY:13450855..13450866, + |
| 1.46e-31 | FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_9964b2c4c8bbdea4c22b123c9c59ab45 | p@chr19:18718172..18718197, + |
| 1.46e-31 | FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_9964b2c4c8bbdea4c22b123c9c59ab45 | p@chr19:18718172..18718197, + |
| 1.71e-30 | FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_27c32889c9c015d5f1651d7912564a59 | p9@ERG |
| 1.71e-30 | FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_27c32889c9c015d5f1651d7912564a59 | p9@ERG |
| 2.3e-30 | FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_c6cb109f4673bf77d8bd801ea4f7336e | p8@ACAN |
| 2.3e-30 | FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_c6cb109f4673bf77d8bd801ea4f7336e | p@chr1:186273262..186273282, + |
| 2.3e-30 | FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_c6cb109f4673bf77d8bd801ea4f7336e | p8@ACAN |
| 2.3e-30 | FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_c6cb109f4673bf77d8bd801ea4f7336e | p@chr1:186273262..186273282, + |
| 7.54e-30 | FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_ecd04b1f1a54dba257bfd5c74928899a | p@chr1:186276427..186276448, + |
| 7.54e-30 | FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_ecd04b1f1a54dba257bfd5c74928899a | p@chr1:186276427..186276448, + |
| 8.12e-28 | FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_d80bb20f0fd17430c60f4a8604b00cef | p21@SEMA3C |
| 8.12e-28 | FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_d80bb20f0fd17430c60f4a8604b00cef | p21@SEMA3C |
| 1.39e-27 | FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_53a260f93b8022bce546bf0d55be9295 | p@chr20:48160907..48160918, - |
| 1.39e-27 | FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_53a260f93b8022bce546bf0d55be9295 | p@chr20:48160907..48160918, - |
| 1.82e-27 | FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_64c1998053e4825916744b18c69d0ac4 | p7@WISP2 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_64c1998053e4825916744b18c69d0ac4 | p7@WISP2 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_64c1998053e4825916744b18c69d0ac4 | p35@CCNL1 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_64c1998053e4825916744b18c69d0ac4 | p35@CCNL1 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_64c1998053e4825916744b18c69d0ac4 | p@chr1:142537912..142537938, - |
| 1.82e-27 | FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_64c1998053e4825916744b18c69d0ac4 | p@chr1:142537912..142537938, - |
| 2.08e-27 | FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_29e9e009b72b7c3e011454a34afcd5aa | p@chr6:1609602..1609636, - |
| 2.08e-27 | FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_29e9e009b72b7c3e011454a34afcd5aa | p@chr6:1609602..1609636, - |
| 2.08e-27 | FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_29e9e009b72b7c3e011454a34afcd5aa | p@chr1:142539672..142539687, - |
| 2.08e-27 | FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_29e9e009b72b7c3e011454a34afcd5aa | p@chr1:142539672..142539687, - |
| 2.38e-27 | FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_a7b6b22f4b54417d73fba4e89b0415d0 | p2@ENST00000436845 |
| 2.38e-27 | FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_a7b6b22f4b54417d73fba4e89b0415d0 | p2@ENST00000436845 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_b002df741babd3fbaea9acdc3eea9d65 | p15@CFB |
| 3.11e-27 | FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_b002df741babd3fbaea9acdc3eea9d65 | p@chr16:15680784..15680797, + |
| 3.11e-27 | FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_b002df741babd3fbaea9acdc3eea9d65 | p15@CFB |
| 3.11e-27 | FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_b002df741babd3fbaea9acdc3eea9d65 | p@chr16:15680784..15680797, + |
| 4.07e-27 | FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_c9c465c85045fdff9159a6b1891045b9 | p21@SULF1 |
| 4.07e-27 | FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_c9c465c85045fdff9159a6b1891045b9 | p21@SULF1 |
