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MCL coexpression mm9:1399: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0.00937912566944505,0.115706259921271,0.169622184461608,1.09761117380473,1.25636907218003,0.0336989752184957,0.948168631196648,0.648552883869453,0.580993171392094,0.733292201409475,0.397920218222632,0.276817857365029,0.450871228692273,0.492220300380958,0.0127444919105114,0.489915027550294,0.844466005571003,0.591386582128232,0.470212099229752,0.955528674530429,-0.0926012301656343,0.0205563265474198,0.508256321588861,0.600963487861365,0.832674910108735,0.174505330040763,0.082012782344578,0.060633863873111,0.714646572940348,-0.0094889993437531,0.0397553613666374,1.55128682908745,1.03272807365066,1.50219796304354,0.120206915668361,0.0332430974356814,0.146017752858728,0.132062056006997,-0.072059656885207,0.238569816273918,0,0.0344446656691881,0.182139294600004,0,0.0050567270040996,0,0.562913935362174,0.226472663202192,0.396444392969112,0.219442694906883,0.206900104919031,0.487152642572074,0.532345951607366,0.703095580439195,0.579245473966469,0.0309318232148859,0,0.345148574345901,0.142519080656744,0.00199139074713884,0.345863837958389,0.465252010303105,0.368319876003559,0.41150892654728,0.062116346021927,0.323452162798777,0.270119356161649,0.2968895816029,0.117132270694814,0.134149134944755,0.233598605260781,0.279915684962528,0.157436242025974,0.0783449599951942,0.126483422073756,0.164106475305635,0.0386915179305415,0.00158334993506138,0.0310288534679737,0.122634912883314,0.112464893924207,0.198483503848306,0.223097476170757,0.161923906494562,0.142285937266389,0.0708841746982316,0.0321606338908294,0.132445184204719,0.222691017178925,0.164951698901284,0.511355493187599,1.24809026919844,0.380926969162617,0.42738497500335,0.562228291298183,0.155612900421526,-0.0210116205955519,-0.0554576186875079,0.816141920623177,0.488602436254379,0.0572260417947564,0.681894549385523,0.27499501239901,0,0.795117009813256,0.754148993377349,0.634673679650356,-0.053457412987002,0,-0.153739827430605,0.090884869198839,0.155286694539998,-0.0157621797759088,0.102788779012556,-0.0739806151924835,-0.072416729130616,-0.0501544426236165,-0.0687948687710535,0,-0.102128388383803,-0.169269718561278,0.130006521454803,0,-0.21212124622988,-0.0377145628969992,0.05835428174197,0.00381288375804356,-0.0981216175555735,-0.0088805006481305,-0.133504900289679,-0.0981216175555735,-0.039789614688608,-0.050419707872862,-0.204037298525937,-0.0682013509545635,-0.101289721865194,-0.0615660736219806,-0.0498727483767265,-0.0148294665567657,-0.0605281098493101,-0.0899218757703126,0.0747507298494206,-0.062169180885011,0.0096599035962809,-0.207382464666426,-0.241373783591632,-0.0443292250198671,-0.0351368165775335,-0.201260331410282,-0.147298733937804,-0.127374121588453,0,0,-0.0992911338895583,-0.0883531759720617,0,-0.0437960915146873,-0.0483938859383719,0.146388435111977,-0.0572453563791245,-0.00672531349103315,0.0359524240942892,-0.0616492912613628,-0.0854600619617102,-0.0123345367051277,0.0446723131133415,-0.224024466379785,-0.096720228204458,-0.0746838177055965,-0.0508497912185058,-0.0924028252285558,-0.066695933670633,-0.0388877057054446,-0.0797494013283675,-0.0192783609950323,-0.0842393521218091,0.0626074649848955,-0.0058479995718592,-0.031313431066242,0.00609975894904235,-0.154047149034841,-0.0898032451747009,-0.114927487069929,-0.0374237479569322,0.0831021329677705,0.131104934671856,0.0162176407451682,0,-0.144854326487612,0,0.0811750325997334,-0.0921648476996215,-0.0086475956413895,0,-0.07797408461047,0,-0.12531430105901,-0.136779746851472,-0.077540359328871,-0.210971323490401,-0.1828069052414,-0.029730984340336,0.148333354631077,-0.0548169973603199,-0.15968188439284,-0.0812894990168088,-0.12618845899601,0.0200879924152981,0.0622350011155569,0.0375901065829206,0.0619701811034624,0.155984675007438,1.39560847968206,0,0.0453437351301665,-0.0093306071508357,-0.00969045719763395,0.0576519394905306,-0.000584980444370275,0.0967307299294694,-0.141494638508163,0.0678553522002043,-0.0145544820272008,-0.211008192149207,-0.0595629254452497,-0.0981216175555735,-0.213916610978434,-0.135307704178936,-0.206556235877909,0.0318325203752555,0.00638534121536345,0,0.603774852447547,0.514718273560552,-0.0464692363998439,-0.0295278355000043,-0.0901261466479159,-0.0326918933946291,0.293669666440082,-0.009361757224281,0.090422298759466,0.152512426636495,0.0777965675976195,0.116671624432699,0.103643315076094,-0.00793860989742955,0.148318470562967,0.192831797240354,0.134984654923574,-0.173895733637543,-0.253358167260624,0.0597852076339598,-0.0772126470512927,-0.242621476136365,0.257120251647031,0.105611772788288,0,0.036767431188409,0.0464906703181589,0.187428770314296,0.0499142369709586,0.0204837224346722,0.168433145632506,0,0.569583737238868,0.418576413222413,0,0,0.143072041924493,0.0518682520611056,0,-0.00759833036070335,0.0401865236163523,0.308679573437977,-0.0151821266271088,0.099351393230107,0.0335913398294422,0,-0.175672566900461,-0.143980665675042,-0.0504475524771476,-0.0323594427791617,-0.0425776343712332,-0.153963891143859,0,-0.14556585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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002371!2.84e-33!118;CL:0000548!3.95e-33!115;CL:0000255!3.95e-33!115;CL:0000034!5.48e-21!97;CL:0000723!7.23e-21!91;CL:0000048!7.23e-21!91;CL:0000219!4.69e-18!54;CL:0002321!1.89e-16!70;CL:0002320!9.30e-15!46;CL:0000134!9.30e-15!46;CL:0002031!3.14e-13!25;CL:0000988!1.21e-09!32;CL:0002032!1.21e-09!32;CL:0000037!1.21e-09!32;CL:0000566!1.21e-09!32;CL:0000837!1.21e-09!32;CL:0000221!1.56e-09!44;CL:0000133!1.56e-09!44;CL:0002319!1.76e-09!43;CL:0000055!3.29e-09!49;CL:0000066!3.29e-08!25;CL:0002242!4.65e-08!16;CL:0000223!4.67e-08!20;CL:0000738!6.70e-08!17;CL:0002087!6.70e-08!17;CL:0000839!9.84e-08!13;CL:0000838!8.15e-07!12
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!9.30e-15!46
}}
}}

Revision as of 16:49, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:39983292..39983306,+p@chr17:39983292..39983306
+
Mm9::chr17:39983468..39983486,-p@chr17:39983468..39983486
-
Mm9::chr17:39984626..39984640,+p@chr17:39984626..39984640
+
Mm9::chr6:6068353..6068354,+p@chr6:6068353..6068354
+
Mm9::chr8:113446928..113446937,+p@chr8:113446928..113446937
+
Mm9::chr9:123371214..123371221,+p@chr9:123371214..123371221
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
somatic cell2.84e-33118
animal cell3.95e-33115
eukaryotic cell3.95e-33115
stem cell5.48e-2197
somatic stem cell7.23e-2191
multi fate stem cell7.23e-2191
motile cell4.69e-1854
embryonic cell1.89e-1670
connective tissue cell9.30e-1546
mesenchymal cell9.30e-1546
hematopoietic lineage restricted progenitor cell3.14e-1325
hematopoietic cell1.21e-0932
hematopoietic oligopotent progenitor cell1.21e-0932
hematopoietic stem cell1.21e-0932
angioblastic mesenchymal cell1.21e-0932
hematopoietic multipotent progenitor cell1.21e-0932
ectodermal cell1.56e-0944
neurectodermal cell1.56e-0944
neural cell1.76e-0943
non-terminally differentiated cell3.29e-0949
epithelial cell3.29e-0825
nucleate cell4.65e-0816
endodermal cell4.67e-0820
leukocyte6.70e-0817
nongranular leukocyte6.70e-0817
myeloid lineage restricted progenitor cell9.84e-0813
lymphoid lineage restricted progenitor cell8.15e-0712

Uber Anatomy
Ontology termp-valuen
connective tissue9.30e-1546


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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