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MCL coexpression mm9:1414: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000349!1.68e-27!3;CL:0000351!1.68e-27!3
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000358!1.68e-27!3;UBERON:0000307!1.68e-27!3;UBERON:0007010!1.68e-27!3;UBERON:0005631!2.06e-27!3;UBERON:0000478!2.06e-27!3;UBERON:0000158!2.06e-27!3;UBERON:0005795!1.72e-20!4;UBERON:0000995!1.72e-20!4;UBERON:0001987!8.62e-19!2;UBERON:0003124!8.62e-19!2;UBERON:0004340!8.62e-19!2;UBERON:0003975!1.54e-16!5;UBERON:0003134!1.39e-10!8;UBERON:0000305!2.48e-10!1;UBERON:0006834!5.62e-10!1;UBERON:0004175!1.79e-09!9;UBERON:0000474!1.79e-09!9;UBERON:0003133!3.58e-09!24;UBERON:0005156!1.80e-08!26;UBERON:0000990!1.80e-08!26;UBERON:0003100!7.44e-08!11
}}
}}

Revision as of 16:51, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr18:83528410..83528425,+p@chr18:83528410..83528425
+
Mm9::chr2:168795611..168795630,-p@chr2:168795611..168795630
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Mm9::chr4:147523754..147523759,-p15@Fbxo6
Mm9::chr4:147523793..147523805,-p11@Fbxo6
Mm9::chr4:150253699..150253709,-p@chr4:150253699..150253709
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Mm9::chr5:151220994..151221009,+p@chr5:151220994..151221009
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
extraembryonic cell1.68e-273
trophoblast cell1.68e-273

Uber Anatomy
Ontology termp-valuen
blastocyst1.68e-273
blastula1.68e-273
cleaving embryo1.68e-273
extraembryonic membrane2.06e-273
extraembryonic structure2.06e-273
membranous layer2.06e-273
embryonic uterus1.72e-204
uterus1.72e-204
placenta8.62e-192
chorion8.62e-192
allantois8.62e-192
internal female genitalia1.54e-165
female reproductive organ1.39e-108
amnion2.48e-101
uterus or analog5.62e-101
internal genitalia1.79e-099
female reproductive system1.79e-099
reproductive organ3.58e-0924
reproductive structure1.80e-0826
reproductive system1.80e-0826
female organism7.44e-0811


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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