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MCL coexpression mm9:3076: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!1.35e-33!22;UBERON:0007499!1.35e-33!22;UBERON:0006925!1.35e-33!22;UBERON:0009497!1.35e-33!22;UBERON:0000015!1.35e-33!22;UBERON:0002423!1.35e-33!22;UBERON:0006235!1.35e-33!22;UBERON:0008835!1.35e-33!22;UBERON:0003894!1.35e-33!22;UBERON:0004161!1.35e-33!22;UBERON:0008836!1.35e-33!22;UBERON:0009854!5.00e-32!23;UBERON:0009856!5.00e-32!23;UBERON:0002365!2.88e-29!25;UBERON:0002330!2.88e-29!25;UBERON:0005256!3.91e-15!45;UBERON:0003914!2.21e-14!47;UBERON:0005172!1.09e-13!49;UBERON:0005173!1.09e-13!49;UBERON:0002417!1.09e-13!49;UBERON:0000916!1.09e-13!49;UBERON:0003929!6.48e-12!55;UBERON:0002368!1.05e-10!60;UBERON:0003104!1.73e-10!61;UBERON:0009142!1.73e-10!61;UBERON:0002530!1.10e-09!65;UBERON:0000490!1.69e-09!66;UBERON:0009569!1.69e-09!66;UBERON:0005911!5.67e-09!69;UBERON:0000466!9.71e-09!79;UBERON:0000949!1.72e-08!72;UBERON:0005177!1.65e-07!79;UBERON:0001041!2.20e-07!80
}}
}}

Revision as of 19:29, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:14536242..14536253,+p@chr17:14536242..14536253
+
Mm9::chr17:14536267..14536279,+p@chr17:14536267..14536279
+
Mm9::chr1:186616702..186616708,-p@chr1:186616702..186616708
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
liver1.35e-3322
epithelial sac1.35e-3322
digestive gland1.35e-3322
epithelium of foregut-midgut junction1.35e-3322
anatomical boundary1.35e-3322
hepatobiliary system1.35e-3322
foregut-midgut junction1.35e-3322
hepatic diverticulum1.35e-3322
liver primordium1.35e-3322
septum transversum1.35e-3322
liver bud1.35e-3322
digestive tract diverticulum5.00e-3223
sac5.00e-3223
exocrine gland2.88e-2925
exocrine system2.88e-2925
trunk mesenchyme3.91e-1545
epithelial tube2.21e-1447
abdomen element1.09e-1349
abdominal segment element1.09e-1349
abdominal segment of trunk1.09e-1349
abdomen1.09e-1349
gut epithelium6.48e-1255
endocrine gland1.05e-1060
mesenchyme1.73e-1061
entire embryonic mesenchyme1.73e-1061
gland1.10e-0965
unilaminar epithelium1.69e-0966
subdivision of trunk1.69e-0966
endo-epithelium5.67e-0969
immaterial anatomical entity9.71e-0979
endocrine system1.72e-0872
trunk region element1.65e-0779
foregut2.20e-0780


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}