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MCL coexpression mm9:3351: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000991!1.23e-22!18;UBERON:0005564!1.23e-22!18;UBERON:0004176!4.78e-21!17;UBERON:0009196!4.78e-21!17;UBERON:0009117!4.78e-21!17;UBERON:0003133!7.38e-18!24;UBERON:0000473!6.48e-17!14;UBERON:0002323!2.33e-16!37;UBERON:0004458!2.33e-16!37;UBERON:0005156!4.04e-16!26;UBERON:0000990!4.04e-16!26;UBERON:0003886!8.96e-16!38;UBERON:0003135!1.42e-15!15;UBERON:0002553!3.21e-15!39;UBERON:0003101!2.11e-14!16;UBERON:0000079!2.11e-14!16;UBERON:0002369!3.62e-14!7;UBERON:0006858!3.62e-14!7;UBERON:0000464!1.21e-08!57;UBERON:0003064!7.49e-08!14;UBERON:0002106!4.40e-07!6;UBERON:0004457!4.40e-07!6;UBERON:0000042!4.40e-07!6;UBERON:0004854!4.40e-07!6;UBERON:0009034!4.40e-07!6;UBERON:0002095!4.40e-07!6;UBERON:0004782!4.40e-07!6;UBERON:0003281!4.40e-07!6;UBERON:0009664!4.40e-07!6;UBERON:0002296!4.40e-07!6;UBERON:0005602!4.40e-07!6;UBERON:0001179!4.40e-07!6;UBERON:0006293!4.40e-07!6
}}
}}

Revision as of 19:55, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:38563878..38563923,-p@chr2:38563878..38563923
-
Mm9::chr2:38567715..38567730,-p2@Nr5a1
Mm9::chr2:38570011..38570034,-p1@Nr5a1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gonad1.23e-2218
gonad primordium1.23e-2218
external genitalia4.78e-2117
indifferent external genitalia4.78e-2117
indifferent gonad4.78e-2117
reproductive organ7.38e-1824
testis6.48e-1714
body cavity2.33e-1637
body cavity or lining2.33e-1637
reproductive structure4.04e-1626
reproductive system4.04e-1626
body cavity precursor8.96e-1638
male reproductive organ1.42e-1515
anatomical cavity3.21e-1539
male organism2.11e-1416
male reproductive system2.11e-1416
adrenal gland3.62e-147
adrenal/interrenal gland3.62e-147
anatomical space1.21e-0857
intermediate mesoderm7.49e-0814
spleen4.40e-076
cavity lining4.40e-076
serous membrane4.40e-076
gastrointestinal system mesentery4.40e-076
stomach region4.40e-076
mesentery4.40e-076
gastrointestinal system serosa4.40e-076
mesentery of stomach4.40e-076
gut mesentery4.40e-076
dorsal mesentery4.40e-076
dorsal mesogastrium4.40e-076
peritoneal cavity4.40e-076
spleen primordium4.40e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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