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MCL coexpression mm9:3461: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000991!1.68e-12!18;UBERON:0005564!1.68e-12!18;UBERON:0004176!9.24e-12!17;UBERON:0009196!9.24e-12!17;UBERON:0009117!9.24e-12!17;UBERON:0003133!4.60e-11!24;UBERON:0005156!6.16e-11!26;UBERON:0000990!6.16e-11!26;UBERON:0003135!5.65e-10!15;UBERON:0010314!7.53e-10!92;UBERON:0003886!8.26e-10!38;UBERON:0000473!1.36e-09!14;UBERON:0002323!2.05e-09!37;UBERON:0004458!2.05e-09!37;UBERON:0002553!2.51e-09!39;UBERON:0003101!4.92e-09!16;UBERON:0000079!4.92e-09!16;UBERON:0000970!8.07e-09!9;UBERON:0000019!8.07e-09!9;UBERON:0000047!8.07e-09!9;UBERON:0010312!8.07e-09!9;UBERON:0004088!8.07e-09!9;UBERON:0002104!8.07e-09!9;UBERON:0001456!8.07e-09!9;UBERON:0003072!8.07e-09!9;UBERON:0004128!8.07e-09!9;UBERON:0003071!8.07e-09!9;UBERON:0000020!1.00e-08!12;UBERON:0001032!1.00e-08!12;UBERON:0004456!1.00e-08!12;UBERON:0000033!9.47e-08!13;UBERON:0005085!9.47e-08!13
}}
}}

Revision as of 20:06, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr4:138375128..138375149,-p1@Pla2g5
Mm9::chr4:138375157..138375162,-p4@Pla2g5
Mm9::chr4:138375166..138375173,-p3@Pla2g5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gonad1.68e-1218
gonad primordium1.68e-1218
external genitalia9.24e-1217
indifferent external genitalia9.24e-1217
indifferent gonad9.24e-1217
reproductive organ4.60e-1124
reproductive structure6.16e-1126
reproductive system6.16e-1126
male reproductive organ5.65e-1015
structure with developmental contribution from neural crest7.53e-1092
body cavity precursor8.26e-1038
testis1.36e-0914
body cavity2.05e-0937
body cavity or lining2.05e-0937
anatomical cavity2.51e-0939
male organism4.92e-0916
male reproductive system4.92e-0916
eye8.07e-099
camera-type eye8.07e-099
simple eye8.07e-099
immature eye8.07e-099
ocular region8.07e-099
visual system8.07e-099
face8.07e-099
optic cup8.07e-099
optic vesicle8.07e-099
eye primordium8.07e-099
sense organ1.00e-0812
sensory system1.00e-0812
entire sense organ system1.00e-0812
head9.47e-0813
ectodermal placode9.47e-0813


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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