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MCL coexpression mm9:3566: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002100!1.19e-16!90;UBERON:0009569!2.78e-16!66;UBERON:0003104!2.19e-15!61;UBERON:0009142!2.19e-15!61;UBERON:0005177!3.48e-15!79;UBERON:0005172!2.56e-14!49;UBERON:0005173!2.56e-14!49;UBERON:0002417!2.56e-14!49;UBERON:0000916!2.56e-14!49;UBERON:0004119!1.02e-12!118;UBERON:0000925!1.02e-12!118;UBERON:0006595!1.02e-12!118;UBERON:0001007!2.35e-12!116;UBERON:0001555!2.35e-12!116;UBERON:0007026!2.35e-12!116;UBERON:0005256!3.01e-12!45;UBERON:0004921!2.08e-11!114;UBERON:0009854!6.75e-11!23;UBERON:0009856!6.75e-11!23;UBERON:0002107!1.74e-10!22;UBERON:0007499!1.74e-10!22;UBERON:0006925!1.74e-10!22;UBERON:0009497!1.74e-10!22;UBERON:0000015!1.74e-10!22;UBERON:0002423!1.74e-10!22;UBERON:0006235!1.74e-10!22;UBERON:0008835!1.74e-10!22;UBERON:0003894!1.74e-10!22;UBERON:0004161!1.74e-10!22;UBERON:0008836!1.74e-10!22;UBERON:0002365!2.51e-10!25;UBERON:0002330!2.51e-10!25;UBERON:0000466!8.18e-09!79;UBERON:0003914!2.27e-08!47
}}
}}

Revision as of 20:16, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:48790741..48790756,-p7@Tmem176b
Mm9::chr6:48790758..48790769,-p15@Tmem176b
Mm9::chr6:48790770..48790785,-p10@Tmem176b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
trunk1.19e-1690
subdivision of trunk2.78e-1666
mesenchyme2.19e-1561
entire embryonic mesenchyme2.19e-1561
trunk region element3.48e-1579
abdomen element2.56e-1449
abdominal segment element2.56e-1449
abdominal segment of trunk2.56e-1449
abdomen2.56e-1449
endoderm-derived structure1.02e-12118
endoderm1.02e-12118
presumptive endoderm1.02e-12118
digestive system2.35e-12116
digestive tract2.35e-12116
primitive gut2.35e-12116
trunk mesenchyme3.01e-1245
subdivision of digestive tract2.08e-11114
digestive tract diverticulum6.75e-1123
sac6.75e-1123
liver1.74e-1022
epithelial sac1.74e-1022
digestive gland1.74e-1022
epithelium of foregut-midgut junction1.74e-1022
anatomical boundary1.74e-1022
hepatobiliary system1.74e-1022
foregut-midgut junction1.74e-1022
hepatic diverticulum1.74e-1022
liver primordium1.74e-1022
septum transversum1.74e-1022
liver bud1.74e-1022
exocrine gland2.51e-1025
exocrine system2.51e-1025
immaterial anatomical entity8.18e-0979
epithelial tube2.27e-0847


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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