Personal tools

MCL coexpression mm9:722: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0,0.653355080734854,1.00876892837319,0.585093656858881,0.653817220144932,0.296444721949173,0.35829316420735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.792807885166844,1.07888845768241,0.866280934300818,0.723464779823445,0.637336261601719,0.737568269453585,0.509090509111402,0.645848418657212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724449502277229,1.39427079374805,1.21889267099003,1.11694679942544,0.819315773531689,0.470247626688723,0,0,0,0,0,0,0,0,0,0,0.958627834291881,0,0,0.0347388317801137,0.115432590314795,0.0450611899487389,0.183460355384256,0.146282198735668,0.0514097768499148,1.32949607453991,0,0,0,0,0,0,0,0,0.72822001006627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0304819657131131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9292978743827,0.704265793387237,0,0,0.0761160374363268,0.256894241075405,0.406021558798443,0.702957402203108,0.96164999112592,1.09496437593745,1.05908085449086,0.708987085132877,0.893449406291059,0.567785802556689,1.05396812135112,0.971667346142691,0,0,0,0,0,0,0,0,0,0,0.975327803264521,0.0670132089181356,0.110961008252254,0.0880872011895838,0.324960730549808,0.590409990375266,0.886273997123562,1.05019069591857,1.08146306260113,1.43335467677105,1.12059827541667,1.16381582748723,1.4774035065044,0.931652650283895,0.824826497220242,1.17560159077001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0355847379748454,0,0,0,0.0471972389326998,0,0,0,0,0.39753192246515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412724721966378,0,0,0,0,0,0,0.852182816272341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0412290086072516,0.188097348131291,0.223838914215041,0.250638924439374,0.42695473942601,0,0,0,0,0,0,0,0,0,0.100511416252052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0980190734489225,0.0472542065752338,0,0.156343695962688,0.190791742259896,0.179431503765693,0.120876255993453,0.171443809206049,0.178101321237085,0.0750453505157095,0.273009741501756,0.0984595265061961,0.119117816449289,0,0.0905291472420136,0.141706336142815,0.20546342740088,0.156567915037224,0.113395103429383,0.230619519744562,0.191870730398594,0.178102054159327,0.10799917315244,0.190168443418861,0.189990830607665,0.252661106676919,0.233912889777115,0.193442483447008,0.132229279644795,0.126009132120275,0.384476503423014,0.0625582350728301,0.270815747335205,0,0.380860325368858,0.266473450377817,0,0,0
|coexpression_dpi_cluster_scores_median=0,0.653355080734854,1.00876892837319,0.585093656858881,0.653817220144932,0.296444721949173,0.35829316420735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.792807885166844,1.07888845768241,0.866280934300818,0.723464779823445,0.637336261601719,0.737568269453585,0.509090509111402,0.645848418657212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724449502277229,1.39427079374805,1.21889267099003,1.11694679942544,0.819315773531689,0.470247626688723,0,0,0,0,0,0,0,0,0,0,0.958627834291881,0,0,0.0347388317801137,0.115432590314795,0.0450611899487389,0.183460355384256,0.146282198735668,0.0514097768499148,1.32949607453991,0,0,0,0,0,0,0,0,0.72822001006627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0304819657131131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9292978743827,0.704265793387237,0,0,0.0761160374363268,0.256894241075405,0.406021558798443,0.702957402203108,0.96164999112592,1.09496437593745,1.05908085449086,0.708987085132877,0.893449406291059,0.567785802556689,1.05396812135112,0.971667346142691,0,0,0,0,0,0,0,0,0,0,0.975327803264521,0.0670132089181356,0.110961008252254,0.0880872011895838,0.324960730549808,0.590409990375266,0.886273997123562,1.05019069591857,1.08146306260113,1.43335467677105,1.12059827541667,1.16381582748723,1.4774035065044,0.931652650283895,0.824826497220242,1.17560159077001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0355847379748454,0,0,0,0.0471972389326998,0,0,0,0,0.39753192246515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412724721966378,0,0,0,0,0,0,0.852182816272341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0412290086072516,0.188097348131291,0.223838914215041,0.250638924439374,0.42695473942601,0,0,0,0,0,0,0,0,0,0.100511416252052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0980190734489225,0.0472542065752338,0,0.156343695962688,0.190791742259896,0.179431503765693,0.120876255993453,0.171443809206049,0.178101321237085,0.0750453505157095,0.273009741501756,0.0984595265061961,0.119117816449289,0,0.0905291472420136,0.141706336142815,0.20546342740088,0.156567915037224,0.113395103429383,0.230619519744562,0.191870730398594,0.178102054159327,0.10799917315244,0.190168443418861,0.189990830607665,0.252661106676919,0.233912889777115,0.193442483447008,0.132229279644795,0.126009132120275,0.384476503423014,0.0625582350728301,0.270815747335205,0,0.380860325368858,0.266473450377817,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!2.16e-18!22;UBERON:0007499!2.16e-18!22;UBERON:0006925!2.16e-18!22;UBERON:0009497!2.16e-18!22;UBERON:0000015!2.16e-18!22;UBERON:0002423!2.16e-18!22;UBERON:0006235!2.16e-18!22;UBERON:0008835!2.16e-18!22;UBERON:0003894!2.16e-18!22;UBERON:0004161!2.16e-18!22;UBERON:0008836!2.16e-18!22;UBERON:0009854!3.04e-17!23;UBERON:0009856!3.04e-17!23;UBERON:0000160!1.60e-15!31;UBERON:0002365!3.13e-15!25;UBERON:0002330!3.13e-15!25;UBERON:0004119!1.09e-11!118;UBERON:0000925!1.09e-11!118;UBERON:0006595!1.09e-11!118;UBERON:0005409!1.35e-11!47;UBERON:0001007!1.99e-11!116;UBERON:0001555!1.99e-11!116;UBERON:0007026!1.99e-11!116;UBERON:0004921!2.92e-10!114;UBERON:0005256!3.04e-09!45;UBERON:0000344!5.27e-08!15;UBERON:0005172!7.94e-08!49;UBERON:0005173!7.94e-08!49;UBERON:0002417!7.94e-08!49;UBERON:0000916!7.94e-08!49;UBERON:0003929!3.49e-07!55
}}
}}

Revision as of 21:09, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:7986102..7986126,-p@chr12:7986102..7986126
-
Mm9::chr12:7986177..7986184,-p@chr12:7986177..7986184
-
Mm9::chr8:73239652..73239658,+p@chr8:73239652..73239658
+
Mm9::chr9:46038017..46038058,-p@chr9:46038017..46038058
-
Mm9::chr9:46038091..46038109,-p@chr9:46038091..46038109
-
Mm9::chr9:46038244..46038293,-p@chr9:46038244..46038293
-
Mm9::chr9:46038309..46038345,-p@chr9:46038309..46038345
-
Mm9::chr9:46038359..46038373,-p@chr9:46038359..46038373
-
Mm9::chr9:46038383..46038398,-p@chr9:46038383..46038398
-
Mm9::chr9:46038423..46038432,-p@chr9:46038423..46038432
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver2.16e-1822
epithelial sac2.16e-1822
digestive gland2.16e-1822
epithelium of foregut-midgut junction2.16e-1822
anatomical boundary2.16e-1822
hepatobiliary system2.16e-1822
foregut-midgut junction2.16e-1822
hepatic diverticulum2.16e-1822
liver primordium2.16e-1822
septum transversum2.16e-1822
liver bud2.16e-1822
digestive tract diverticulum3.04e-1723
sac3.04e-1723
intestine1.60e-1531
exocrine gland3.13e-1525
exocrine system3.13e-1525
endoderm-derived structure1.09e-11118
endoderm1.09e-11118
presumptive endoderm1.09e-11118
gastrointestinal system1.35e-1147
digestive system1.99e-11116
digestive tract1.99e-11116
primitive gut1.99e-11116
subdivision of digestive tract2.92e-10114
trunk mesenchyme3.04e-0945
mucosa5.27e-0815
abdomen element7.94e-0849
abdominal segment element7.94e-0849
abdominal segment of trunk7.94e-0849
abdomen7.94e-0849
gut epithelium3.49e-0755


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:722&oldid=2156527"