FFCP PHASE1:Hg19::chr3:174980786..174980789,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype=CL:0000945!2.49e-39!24;CL:0000826!2.49e-39!24;CL:0000542!4.15e-20!53;CL:0000051!4.15e-20!53;CL:0000785!2.07e-17!2;CL:0000955!2.07e-17!2;CL:0000818!2.07e-17!2;CL:0000954!2.07e-17!2;CL:0000816!2.07e-17!2;CL:0000838!3.55e-17!52;CL:0000817!6.38e-12!3;CL:0002087!1.00e-10!119;CL:0000946!1.32e-09!1;CL:0000786!1.32e-09!1;CL:0000980!1.32e-09!1;CL:0000819!1.56e-09!1;CL:0002336!4.87e-09!1;CL:0002261!4.87e-09!1;CL:0002170!4.87e-09!1;CL:0000738!9.44e-09!140;CL:0002031!1.18e-08!124;CL:0002032!4.68e-07!165;CL:0000837!4.68e-07!165 | |ontology_enrichment_celltype=CL:0000945!2.49e-39!24;CL:0000826!2.49e-39!24;CL:0000542!4.15e-20!53;CL:0000051!4.15e-20!53;CL:0000785!2.07e-17!2;CL:0000955!2.07e-17!2;CL:0000818!2.07e-17!2;CL:0000954!2.07e-17!2;CL:0000816!2.07e-17!2;CL:0000838!3.55e-17!52;CL:0000817!6.38e-12!3;CL:0002087!1.00e-10!119;CL:0000946!1.32e-09!1;CL:0000786!1.32e-09!1;CL:0000980!1.32e-09!1;CL:0000819!1.56e-09!1;CL:0002336!4.87e-09!1;CL:0002261!4.87e-09!1;CL:0002170!4.87e-09!1;CL:0000738!9.44e-09!140;CL:0002031!1.18e-08!124;CL:0002032!4.68e-07!165;CL:0000837!4.68e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000945;6.65e-55;24!CL:0000946;8.02e-18;1!CL:0000786;8.02e-18;1!CL:0000785;1.12e-17;1!CL:0000819;1.12e-17;1!CL:0000542;1.73e-13;53!CL:0002087;7.13e-08;104 | |ontology_enrichment_celltype_v019=CL:0000945;6.65e-55;24!CL:0000946;8.02e-18;1!CL:0000786;8.02e-18;1!CL:0000785;1.12e-17;1!CL:0000819;1.12e-17;1!CL:0000542;1.73e-13;53!CL:0002087;7.13e-08;104 | ||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.25e-55,24;CL:0000826,6.25e-55,24;CL:0000785,9.92e-34,2;CL:0000955,9.92e-34,2;CL:0000818,9.92e-34,2;CL:0000954,9.92e-34,2;CL:0000816,9.92e-34,2;CL:0000542,2.31e-30,53;CL:0000051,2.31e-30,53;CL:0000838,4.24e-25,52;CL:0000817,7.20e-23,3;CL:0000946,7.37e-18,1;CL:0000786,7.37e-18,1;CL:0000980,7.37e-18,1;CL:0000819,1.03e-17,1;CL:0002087,1.74e-13,115;CL:0000738,2.72e-11,136;CL:0002031,2.08e-10,120;CL:0002032,2.05e-09,161;CL:0000837,2.05e-09,161;CL:0000037,5.49e-09,168;CL:0000988,1.74e-08,177 | |||
|ontology_enrichment_development_v019=CL:0000954;1.17e-33;2!CL:0000051;1.73e-13;53 | |ontology_enrichment_development_v019=CL:0000954;1.17e-33;2!CL:0000051;1.73e-13;53 | ||
|ontology_enrichment_disease=DOID:0060058!1.18e-28!10;DOID:74!1.57e-16!2;DOID:0060073!1.56e-09!1;DOID:8675!1.56e-09!1;DOID:12603!1.69e-09!1;DOID:630!1.84e-09!1;DOID:0050177!1.84e-09!1;DOID:0050427!1.84e-09!1;DOID:2355!3.53e-09!1;DOID:225!4.50e-09!1;DOID:1287!1.00e-08!4;DOID:2531!5.29e-07!51;DOID:0060083!5.29e-07!51 | |ontology_enrichment_disease=DOID:0060058!1.18e-28!10;DOID:74!1.57e-16!2;DOID:0060073!1.56e-09!1;DOID:8675!1.56e-09!1;DOID:12603!1.69e-09!1;DOID:630!1.84e-09!1;DOID:0050177!1.84e-09!1;DOID:0050427!1.84e-09!1;DOID:2355!3.53e-09!1;DOID:225!4.50e-09!1;DOID:1287!1.00e-08!4;DOID:2531!5.29e-07!51;DOID:0060083!5.29e-07!51 | ||
|ontology_enrichment_disease_v019=DOID:0060058;1.36e-26;10!DOID:0060073;1.12e-17;1!DOID:8675;1.12e-17;1!DOID:12603;1.12e-17;1!DOID:630;1.57e-17;1!DOID:0050177;1.57e-17;1!DOID:0050427;1.57e-17;1 | |ontology_enrichment_disease_v019=DOID:0060058;1.36e-26;10!DOID:0060073;1.12e-17;1!DOID:8675;1.12e-17;1!DOID:12603;1.12e-17;1!DOID:630;1.57e-17;1!DOID:0050177;1.57e-17;1!DOID:0050427;1.57e-17;1 | ||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.41e-26,10;DOID:0060073,1.03e-17,1;DOID:8675,1.03e-17,1;DOID:12603,1.22e-17,1;DOID:630,1.44e-17,1;DOID:0050177,1.44e-17,1;DOID:0050427,1.44e-17,1;DOID:2531,4.22e-08,51;DOID:0060083,4.22e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0001301!3.25e-09!1 | |ontology_enrichment_uberon=UBERON:0001301!3.25e-09!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;7.70e-07;3!UBERON:0002369;8.38e-07;3!UBERON:0001235;8.38e-07;3!UBERON:0006858;8.38e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0002106;7.70e-07;3!UBERON:0002369;8.38e-07;3!UBERON:0001235;8.38e-07;3!UBERON:0006858;8.38e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,7.70e-07,3;UBERON:0004854,7.70e-07,3;UBERON:0009034,7.70e-07,3;UBERON:0002095,7.70e-07,3;UBERON:0004782,7.70e-07,3;UBERON:0003281,7.70e-07,3;UBERON:0009664,7.70e-07,3;UBERON:0002296,7.70e-07,3;UBERON:0005602,7.70e-07,3;UBERON:0001179,7.70e-07,3;UBERON:0006293,7.70e-07,3;UBERON:0002369,8.62e-07,3;UBERON:0001235,8.62e-07,3;UBERON:0006858,8.62e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9138655714038,6.8143489243455,9.05173985107311,0,0,0,0,0,0,0.309868802321207,6.25544622944655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22963810150862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39809460898638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75434274404738,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55436704901932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33971858218986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.91795557689649,0,0,0,0,0,0,0,0,0,0,0.47775168788705,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69723432847166,0.357107877211315,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60284246151616 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9138655714038,6.8143489243455,9.05173985107311,0,0,0,0,0,0,0.309868802321207,6.25544622944655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22963810150862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39809460898638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75434274404738,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55436704901932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33971858218986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.91795557689649,0,0,0,0,0,0,0,0,0,0,0.47775168788705,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69723432847166,0.357107877211315,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60284246151616 | ||
|short_description=p@chr3:174980786..174980789,- | |short_description=p@chr3:174980786..174980789,- | ||
}} | }} |
Revision as of 22:04, 17 November 2012
Short description: | p@chr3:174980786..174980789, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:174980786..174980789, - |
Coexpression cluster: | C36_B_b_splenic_plasma_xeroderma_adrenal_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.25e-55 | 24 |
pro-B cell | 6.25e-55 | 24 |
mature B cell | 9.92e-34 | 2 |
pre-B-II cell | 9.92e-34 | 2 |
transitional stage B cell | 9.92e-34 | 2 |
small pre-B-II cell | 9.92e-34 | 2 |
immature B cell | 9.92e-34 | 2 |
lymphocyte | 2.31e-30 | 53 |
common lymphoid progenitor | 2.31e-30 | 53 |
lymphoid lineage restricted progenitor cell | 4.24e-25 | 52 |
precursor B cell | 7.20e-23 | 3 |
antibody secreting cell | 7.37e-18 | 1 |
plasma cell | 7.37e-18 | 1 |
plasmablast | 7.37e-18 | 1 |
B-1 B cell | 1.03e-17 | 1 |
nongranular leukocyte | 1.74e-13 | 115 |
leukocyte | 2.72e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 2.08e-10 | 120 |
hematopoietic oligopotent progenitor cell | 2.05e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.05e-09 | 161 |
hematopoietic stem cell | 5.49e-09 | 168 |
hematopoietic cell | 1.74e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
spleen | 7.70e-07 | 3 |
gastrointestinal system mesentery | 7.70e-07 | 3 |
stomach region | 7.70e-07 | 3 |
mesentery | 7.70e-07 | 3 |
gastrointestinal system serosa | 7.70e-07 | 3 |
mesentery of stomach | 7.70e-07 | 3 |
gut mesentery | 7.70e-07 | 3 |
dorsal mesentery | 7.70e-07 | 3 |
dorsal mesogastrium | 7.70e-07 | 3 |
peritoneal cavity | 7.70e-07 | 3 |
spleen primordium | 7.70e-07 | 3 |
adrenal gland | 8.62e-07 | 3 |
adrenal cortex | 8.62e-07 | 3 |
adrenal/interrenal gland | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.41e-26 | 10 |
lymphatic system cancer | 1.03e-17 | 1 |
lymphosarcoma | 1.03e-17 | 1 |
acute leukemia | 1.22e-17 | 1 |
genetic disease | 1.44e-17 | 1 |
monogenic disease | 1.44e-17 | 1 |
xeroderma pigmentosum | 1.44e-17 | 1 |
hematologic cancer | 4.22e-08 | 51 |
immune system cancer | 4.22e-08 | 51 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.