FFCP PHASE1:Hg19::chr3:107705557..107705564,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|ontology_enrichment_celltype=CL:0002368!6.32e-13!13;CL:0002202!5.51e-11!9;CL:0002632!5.51e-11!9;CL:0000066!1.61e-10!254;CL:0002076!2.40e-10!43;CL:0000223!1.31e-07!59 | |ontology_enrichment_celltype=CL:0002368!6.32e-13!13;CL:0002202!5.51e-11!9;CL:0002632!5.51e-11!9;CL:0000066!1.61e-10!254;CL:0002076!2.40e-10!43;CL:0000223!1.31e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002328;4.35e-23;3!CL:0002202;2.40e-17;9!CL:0002632;2.40e-17;9!CL:0002368;3.27e-12;13!CL:0001014;1.51e-09;2!CL:0002593;1.51e-09;2!CL:0001016;1.51e-09;2!CL:0002076;6.13e-08;42!CL:0000307;5.97e-07;3 | |ontology_enrichment_celltype_v019=CL:0002328;4.35e-23;3!CL:0002202;2.40e-17;9!CL:0002632;2.40e-17;9!CL:0002368;3.27e-12;13!CL:0001014;1.51e-09;2!CL:0002593;1.51e-09;2!CL:0001016;1.51e-09;2!CL:0002076;6.13e-08;42!CL:0000307;5.97e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002328,4.12e-23,3;CL:0002202,2.27e-17,9;CL:0002632,2.27e-17,9;CL:0002368,3.15e-12,13;CL:0002076,5.40e-10,42;CL:0001014,1.33e-09,2;CL:0001016,1.33e-09,2;CL:0002593,2.02e-09,2;CL:0000223,3.11e-07,58;CL:0000068,5.80e-07,3;CL:0000069,5.80e-07,3;CL:0000307,5.80e-07,3;CL:0000377,5.80e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.51e-09;2!UBERON:0010056;1.51e-09;2!CL:0000377;5.97e-07;3 | |ontology_enrichment_development_v019=UBERON:0008814;1.51e-09;2!UBERON:0010056;1.51e-09;2!CL:0000377;5.97e-07;3 | ||
|ontology_enrichment_disease=DOID:0050687!2.52e-14!143;DOID:305!4.11e-13!106;DOID:162!1.49e-10!235;DOID:14566!1.77e-10!239;DOID:1749!2.36e-09!14 | |ontology_enrichment_disease=DOID:0050687!2.52e-14!143;DOID:305!4.11e-13!106;DOID:162!1.49e-10!235;DOID:14566!1.77e-10!239;DOID:1749!2.36e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:4468;1.03e-09;2 | |ontology_enrichment_disease_v019=DOID:4468;1.03e-09;2 | ||
|ontology_enrichment_disease_v019_2=DOID:4468,1.03e-09,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;4.35e-23;3!UBERON:0002031;4.35e-23;3!UBERON:0002185;2.85e-14;5!UBERON:0007196;1.15e-10;15!UBERON:0001558;1.15e-10;15!UBERON:0000485;1.81e-10;7!UBERON:0002456;1.51e-09;2!UBERON:0001723;8.86e-07;3!UBERON:0001033;8.86e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0004815;4.35e-23;3!UBERON:0002031;4.35e-23;3!UBERON:0002185;2.85e-14;5!UBERON:0007196;1.15e-10;15!UBERON:0001558;1.15e-10;15!UBERON:0000485;1.81e-10;7!UBERON:0002456;1.51e-09;2!UBERON:0001723;8.86e-07;3!UBERON:0001033;8.86e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,4.12e-23,3;UBERON:0002031,4.12e-23,3;UBERON:0002185,2.76e-14,5;UBERON:0007196,1.11e-10,15;UBERON:0001558,1.11e-10,15;UBERON:0002456,2.02e-09,2;UBERON:0000485,2.37e-08,9;UBERON:0001723,7.70e-07,3;UBERON:0001033,7.70e-07,3;UBERON:0010056,7.70e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,3.67768489791571,1.50602959389125,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0.573673241497627,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0.355009592516614,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1240175325762,0.301586917234893,0.0925884451585296,0,0,0,0,0,0.288732895522148,0.925971025153221,0,0,0,0,0,0,0,0.16798212819886,0,0.268675568108545,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.616838775210622,0,0.246381468041427,0,0.232420756919918,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0.308097234229289,0.15350367472613,0.551346289938122,0,0,0.170453254832202,0,0,0.384380134730212,0.510450849978337,0.10115778085555,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,1.05650146756755,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0,0.563391205064483,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,5.44454924306613,0,0,5.05414427002877,0,0,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0.659215496907038,0,0,0,0,0,0.246169610922139,0,0.269605053441981,0,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0.910347586283997,0.508507300585533,0.472775363535873,0,0.583209226766509,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,2.28525931422807,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0.150323419414493,0,0,0.330991955875499,0,0,1.99226682220855,0,0,0.0979923974143777,0.261177619741208,0,0,0.0967563312890851,0.0730893170861856,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0.160317640503067,0,0.19980960958213,0,0,0,0.576219191952599,0.248505071130865,0.471388069233591,0.815425236441684,0.836822770498666,0.917983958726896,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5476039091159,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,1.37478448758317,0.606596470166591,0,0,0,0,0.597019211547496,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0.181848659202559,0.214821114084977,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0,0,0,0.244736704506468,0,0,0,0,0.771656153083659,0.168942440653073,0,0,0,0,0,0,0,0,0.491545817507439,0.633936370075881,0,0.106691729694141,0,0,0.368211900503681,0,0,0,0.754773679776773,0.471797825567689,0.982886743728125,0,0,0.371807292777007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.589848616738702,0,1.96393632455575,0.381382095467167,0,0,0,0,0,0,0.982631505060581,0.443568258651136,0,0,0,0,0,0,0,0.175871244359621,0.766574565837572,0,0,0,0,0,0.115233987555779,0,0,0,0.827356886187777,0.333694205676207,0,0,0.280272163313789,0,0.431855182437243,0,0,0,0,0,0,0,0,0.691259661814092,0,0.118332000730565,0,0,0.4582137370881,0,0,0,0,0.487671699929078,0,0,0,0.485710993059139,0,0,0,0.22589216407792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.892769693028288,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784923038064294,0,0,0,0.342233301085281,0,0,0,0.89543595472072,0,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,3.67768489791571,1.50602959389125,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0.573673241497627,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0.355009592516614,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1240175325762,0.301586917234893,0.0925884451585296,0,0,0,0,0,0.288732895522148,0.925971025153221,0,0,0,0,0,0,0,0.16798212819886,0,0.268675568108545,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.616838775210622,0,0.246381468041427,0,0.232420756919918,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0.308097234229289,0.15350367472613,0.551346289938122,0,0,0.170453254832202,0,0,0.384380134730212,0.510450849978337,0.10115778085555,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,1.05650146756755,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0,0.563391205064483,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,5.44454924306613,0,0,5.05414427002877,0,0,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0.659215496907038,0,0,0,0,0,0.246169610922139,0,0.269605053441981,0,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0.910347586283997,0.508507300585533,0.472775363535873,0,0.583209226766509,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,2.28525931422807,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0.150323419414493,0,0,0.330991955875499,0,0,1.99226682220855,0,0,0.0979923974143777,0.261177619741208,0,0,0.0967563312890851,0.0730893170861856,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0.160317640503067,0,0.19980960958213,0,0,0,0.576219191952599,0.248505071130865,0.471388069233591,0.815425236441684,0.836822770498666,0.917983958726896,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5476039091159,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,1.37478448758317,0.606596470166591,0,0,0,0,0.597019211547496,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0.181848659202559,0.214821114084977,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0,0,0,0.244736704506468,0,0,0,0,0.771656153083659,0.168942440653073,0,0,0,0,0,0,0,0,0.491545817507439,0.633936370075881,0,0.106691729694141,0,0,0.368211900503681,0,0,0,0.754773679776773,0.471797825567689,0.982886743728125,0,0,0.371807292777007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.589848616738702,0,1.96393632455575,0.381382095467167,0,0,0,0,0,0,0.982631505060581,0.443568258651136,0,0,0,0,0,0,0,0.175871244359621,0.766574565837572,0,0,0,0,0,0.115233987555779,0,0,0,0.827356886187777,0.333694205676207,0,0,0.280272163313789,0,0.431855182437243,0,0,0,0,0,0,0,0,0.691259661814092,0,0.118332000730565,0,0,0.4582137370881,0,0,0,0,0.487671699929078,0,0,0,0.485710993059139,0,0,0,0.22589216407792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.892769693028288,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784923038064294,0,0,0,0.342233301085281,0,0,0,0.89543595472072,0,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p@chr3:107705557..107705564,- | |short_description=p@chr3:107705557..107705564,- | ||
}} | }} |
Revision as of 00:34, 20 November 2012
Short description: | p@chr3:107705557..107705564, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:107705557..107705564, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 4.12e-23 | 3 |
epithelial cell of tracheobronchial tree | 2.27e-17 | 9 |
epithelial cell of lower respiratory tract | 2.27e-17 | 9 |
respiratory epithelial cell | 3.15e-12 | 13 |
endo-epithelial cell | 5.40e-10 | 42 |
CD1a-positive Langerhans cell | 1.33e-09 | 2 |
immature CD1a-positive Langerhans cell | 1.33e-09 | 2 |
smooth muscle cell of the internal thoracic artery | 2.02e-09 | 2 |
endodermal cell | 3.11e-07 | 58 |
duct epithelial cell | 5.80e-07 | 3 |
branched duct epithelial cell | 5.80e-07 | 3 |
tracheal epithelial cell | 5.80e-07 | 3 |
tracheoblast | 5.80e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 4.12e-23 | 3 |
epithelium of bronchus | 4.12e-23 | 3 |
bronchus | 2.76e-14 | 5 |
tracheobronchial tree | 1.11e-10 | 15 |
lower respiratory tract | 1.11e-10 | 15 |
internal thoracic artery | 2.02e-09 | 2 |
simple columnar epithelium | 2.37e-08 | 9 |
tongue | 7.70e-07 | 3 |
gustatory system | 7.70e-07 | 3 |
future tongue | 7.70e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.03e-09 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.