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Coexpression cluster:C99: Difference between revisions

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|tfbs_overrepresentation_for_novel_motifs=0.00580572,0.185514,0.0223166,1.47324,1.53886,0.211667,0.104515,1.0954,0.378354,0.0363005,0.149235,0.409993,0.015276,0.261218,1.31614,0.434459,0.0305259,1.56254,0.310533,0.271522,1.21241,1.35694,0.194391,1.47033,0.0554456,0.676806,1.57305,0.404576,0.00837702,0.54811,0.0345867,0.119196,0.220673,0.374974,0.0113719,0.0418152,7.71546e-08,0.0176323,0.805505,0.00289476,0.413952,0.0258494,2.55931,0.0749125,0.00770511,0.0421731,0.105771,0.0771925,2.16569,0.338369,0.0594476,0.0614852,0.538303,0.0751761,1.09284,0.0949729,0.358889,0.0637504,0.463828,0.0629176,0.0120109,0.0548708,0.793648,0.162257,0.0296565,1.79889,0.260461,0.269339,0.23343,0.169587,0.00877978,1.51886,3.20126e-06,0.397933,3.7461e-07,0.0406183,1.83772,0.437669,0.62952,0.655722,0.959632,0.296437,1.43107,1.46656,0.136563,4.52978e-09,0.111533,0.230174,0.622945,0.899964,0.11302,0.117757,0.0095918,0.619857,0.000459644,1.37484,0.142505,0.579121,0.640201,0.0804179,0.458008,0.459266,0.0640085,0.360942,0.365788,0.00912491,0.0823951,0.71602,0.0552012,0.0100156,0.133225,0.557481,0.800405,0.364831,0.0924663,0.393749,0.000733814,0.00200143,0.0520604,0.0740354,0.683991,0.613945,0.759246,0.54203,0.143097,0.143846,0.405563,0.0503045,0.206616,0.628125,0.118218,0.183579,0.219847,1.4917,0.118907,0.989669,0.0596359,1.13384,0.329046,0.71691,0.37853,1.01178,0.990998,0.171431,0.221059,0.178979,0.728101,0.576571,0.543467,0.0254977,0.110221,2.89298e-16,0.0285258,0.400316,0.187844,0.54834,0.241434,3.66959,0.218887,0.0321685,0.286728,0.106448,0.0373015,0.222509,0.056471,0.0670352,0.098526,0.422141,4.48117e-06
|tfbs_overrepresentation_for_novel_motifs=0.00580572,0.185514,0.0223166,1.47324,1.53886,0.211667,0.104515,1.0954,0.378354,0.0363005,0.149235,0.409993,0.015276,0.261218,1.31614,0.434459,0.0305259,1.56254,0.310533,0.271522,1.21241,1.35694,0.194391,1.47033,0.0554456,0.676806,1.57305,0.404576,0.00837702,0.54811,0.0345867,0.119196,0.220673,0.374974,0.0113719,0.0418152,7.71546e-08,0.0176323,0.805505,0.00289476,0.413952,0.0258494,2.55931,0.0749125,0.00770511,0.0421731,0.105771,0.0771925,2.16569,0.338369,0.0594476,0.0614852,0.538303,0.0751761,1.09284,0.0949729,0.358889,0.0637504,0.463828,0.0629176,0.0120109,0.0548708,0.793648,0.162257,0.0296565,1.79889,0.260461,0.269339,0.23343,0.169587,0.00877978,1.51886,3.20126e-06,0.397933,3.7461e-07,0.0406183,1.83772,0.437669,0.62952,0.655722,0.959632,0.296437,1.43107,1.46656,0.136563,4.52978e-09,0.111533,0.230174,0.622945,0.899964,0.11302,0.117757,0.0095918,0.619857,0.000459644,1.37484,0.142505,0.579121,0.640201,0.0804179,0.458008,0.459266,0.0640085,0.360942,0.365788,0.00912491,0.0823951,0.71602,0.0552012,0.0100156,0.133225,0.557481,0.800405,0.364831,0.0924663,0.393749,0.000733814,0.00200143,0.0520604,0.0740354,0.683991,0.613945,0.759246,0.54203,0.143097,0.143846,0.405563,0.0503045,0.206616,0.628125,0.118218,0.183579,0.219847,1.4917,0.118907,0.989669,0.0596359,1.13384,0.329046,0.71691,0.37853,1.01178,0.990998,0.171431,0.221059,0.178979,0.728101,0.576571,0.543467,0.0254977,0.110221,2.89298e-16,0.0285258,0.400316,0.187844,0.54834,0.241434,3.66959,0.218887,0.0321685,0.286728,0.106448,0.0373015,0.222509,0.056471,0.0670352,0.098526,0.422141,4.48117e-06
|tfbs_overrepresentation_jaspar=MA0003.1;5.76317e-06,MA0004.1;1.48724,MA0006.1;0.168622,MA0007.1;0.698306,MA0009.1;0.230395,MA0014.1;3.48923e-08,MA0017.1;0.525209,MA0019.1;0.42552,MA0024.1;0.121381,MA0025.1;0.189673,MA0027.1;1.17088,MA0028.1;0.00213072,MA0029.1;0.283019,MA0030.1;0.128202,MA0031.1;0.74898,MA0038.1;0.606284,MA0040.1;0.292574,MA0041.1;0.197769,MA0042.1;0.304599,MA0043.1;0.439097,MA0046.1;0.416831,MA0048.1;0.0307975,MA0050.1;0.924419,MA0051.1;0.588046,MA0052.1;0.0110572,MA0055.1;2.19384,MA0056.1;0,MA0057.1;0.0321993,MA0058.1;0.689372,MA0059.1;0.309602,MA0060.1;0.138087,MA0061.1;2.08437,MA0063.1;0,MA0066.1;1.89687,MA0067.1;0.120593,MA0068.1;0.0450839,MA0069.1;0.212723,MA0070.1;0.199806,MA0071.1;0.612925,MA0072.1;0.935637,MA0073.1;0.000550007,MA0074.1;0.10196,MA0076.1;0.00501717,MA0077.1;0.186213,MA0078.1;0.407561,MA0081.1;0.0176952,MA0083.1;0.096791,MA0084.1;0.223625,MA0087.1;0.0743418,MA0088.1;0.938315,MA0089.1;0,MA0090.1;0.161884,MA0091.1;0.0556527,MA0092.1;0.0572965,MA0093.1;2.0145,MA0095.1;0,MA0098.1;0,MA0100.1;0.0279095,MA0101.1;2.06849,MA0103.1;0.360088,MA0105.1;1.39768,MA0106.1;1.31123,MA0107.1;1.71315,MA0108.2;0.737629,MA0109.1;0,MA0111.1;1.02434,MA0113.1;0.656075,MA0114.1;0.157356,MA0115.1;0.0875847,MA0116.1;2.70222,MA0117.1;0.115848,MA0119.1;0.717623,MA0122.1;1.30217,MA0124.1;0.251796,MA0125.1;0.174396,MA0130.1;0,MA0131.1;0.00978361,MA0132.1;0,MA0133.1;0,MA0135.1;0.269102,MA0136.1;0.200665,MA0139.1;0.0821274,MA0140.1;0.439295,MA0141.1;0.302786,MA0142.1;0.423925,MA0143.1;0.190264,MA0144.1;0.437129,MA0145.1;0.383622,MA0146.1;0.00355961,MA0147.1;0.104151,MA0148.1;0.44365,MA0149.1;0.00303482,MA0062.2;0.000626276,MA0035.2;0.785361,MA0039.2;0.0023846,MA0138.2;0.028505,MA0002.2;4.55681,MA0137.2;0.24217,MA0104.2;0.0306967,MA0047.2;0.739049,MA0112.2;1.54278,MA0065.2;0.3631,MA0150.1;0.868702,MA0151.1;0,MA0152.1;0.21402,MA0153.1;0.367106,MA0154.1;1.4577,MA0155.1;0.502119,MA0156.1;0.441286,MA0157.1;0.356399,MA0158.1;0,MA0159.1;0.93639,MA0160.1;0.364632,MA0161.1;0,MA0162.1;6.87494e-05,MA0163.1;0.026887,MA0164.1;0.507117,MA0080.2;0.329455,MA0018.2;0.417729,MA0099.2;0.828712,MA0079.2;9.64327e-17,MA0102.2;0.247412,MA0258.1;2.65782,MA0259.1;0.0570208,MA0442.1;0
}}
}}

Revision as of 18:20, 22 January 2013


Full id: C99_hairy_mycosis_submaxillary_salivary_cord_kidney_parotid



Phase1 CAGE Peaks

Hg19::chr10:104156195..104156217,+p@chr10:104156195..104156217
+
Hg19::chr10:104157255..104157271,+p@chr10:104157255..104157271
+
Hg19::chr10:134746611..134746651,-p@chr10:134746611..134746651
-
Hg19::chr10:135107411..135107414,+p@chr10:135107411..135107414
+
Hg19::chr10:30977801..30977807,+p@chr10:30977801..30977807
+
Hg19::chr10:30977839..30977844,+p@chr10:30977839..30977844
+
Hg19::chr10:30977872..30977875,+p@chr10:30977872..30977875
+
Hg19::chr10:4951559..4951578,+p@chr10:4951559..4951578
+
Hg19::chr10:6045414..6045424,+p@chr10:6045414..6045424
+
Hg19::chr10:92865673..92865678,+p@chr10:92865673..92865678
+
Hg19::chr11:103496891..103496898,-p@chr11:103496891..103496898
-
Hg19::chr11:103496981..103496989,-p@chr11:103496981..103496989
-
Hg19::chr11:117695233..117695244,-p11@FXYD2
Hg19::chr11:117698765..117698779,-p5@FXYD2
Hg19::chr11:117698787..117698813,-p2@FXYD2
Hg19::chr11:1862032..1862039,+p@chr11:1862032..1862039
+
Hg19::chr11:327445..327463,+p3@ENST00000531076
Hg19::chr11:44636841..44636889,+p@chr11:44636841..44636889
+
Hg19::chr11:60810625..60810635,-p@chr11:60810625..60810635
-
Hg19::chr11:60849597..60849629,-p@chr11:60849597..60849629
-
Hg19::chr11:75946917..75946931,-p@chr11:75946917..75946931
-
Hg19::chr12:108274444..108274448,+p@chr12:108274444..108274448
+
Hg19::chr12:114404090..114404099,-p2@RBM19
Hg19::chr12:124968655..124968666,-p48@NCOR2
Hg19::chr12:4745521..4745524,+p@chr12:4745521..4745524
+
Hg19::chr12:6890042..6890078,+p@chr12:6890042..6890078
+
Hg19::chr13:46275503..46275539,-p@chr13:46275503..46275539
-
Hg19::chr14:106241831..106241872,-p@chr14:106241831..106241872
-
Hg19::chr14:106241922..106241931,-p@chr14:106241922..106241931
-
Hg19::chr14:50459621..50459636,-p@chr14:50459621..50459636
-
Hg19::chr14:89744573..89744583,-p@chr14:89744573..89744583
-
Hg19::chr15:27127807..27127817,+p@chr15:27127807..27127817
+
Hg19::chr15:27127940..27127947,+p@chr15:27127940..27127947
+
Hg19::chr15:27128596..27128607,+p29@GABRA5
Hg19::chr15:29335471..29335476,+p@chr15:29335471..29335476
+
Hg19::chr15:50546894..50546913,-p@chr15:50546894..50546913
-
Hg19::chr15:57401426..57401459,+p20@TCF12
Hg19::chr15:91369648..91369659,+p@chr15:91369648..91369659
+
Hg19::chr16:24549074..24549082,+p9@RBBP6
Hg19::chr16:57931338..57931345,-p@chr16:57931338..57931345
-
Hg19::chr16:73266673..73266687,+p@chr16:73266673..73266687
+
Hg19::chr17:27216091..27216096,-p11@FLOT2
Hg19::chr17:27216182..27216204,-p3@FLOT2
Hg19::chr17:43310611..43310637,+p21@FMNL1
Hg19::chr17:71223579..71223589,-p@chr17:71223579..71223589
-
Hg19::chr17:74271980..74271992,-p@chr17:74271980..74271992
-
Hg19::chr17:74272005..74272020,-p@chr17:74272005..74272020
-
Hg19::chr17:74272029..74272036,-p@chr17:74272029..74272036
-
Hg19::chr17:74272055..74272058,-p@chr17:74272055..74272058
-
Hg19::chr17:74272157..74272179,-p@chr17:74272157..74272179
-
Hg19::chr18:21322164..21322173,+p@chr18:21322164..21322173
+
Hg19::chr18:54725248..54725259,-p@chr18:54725248..54725259
-
Hg19::chr18:55095246..55095262,+p@chr18:55095246..55095262
+
Hg19::chr18:56631378..56631384,-p@chr18:56631378..56631384
-
Hg19::chr19:14591218..14591237,-p8@GIPC1
Hg19::chr19:17464436..17464438,+p@chr19:17464436..17464438
+
Hg19::chr1:1141927..1141985,-p1@TNFRSF18
Hg19::chr1:1142067..1142076,-p4@TNFRSF18
Hg19::chr1:1142084..1142097,-p3@TNFRSF18
Hg19::chr1:1142184..1142194,-p2@TNFRSF18
Hg19::chr1:1143531..1143567,-p@chr1:1143531..1143567
-
Hg19::chr1:1149526..1149539,-p1@TNFRSF4
Hg19::chr1:1154360..1154365,-p@chr1:1154360..1154365
-
Hg19::chr1:1154830..1154841,-p@chr1:1154830..1154841
-
Hg19::chr1:1154851..1154861,-p@chr1:1154851..1154861
-
Hg19::chr1:1154868..1154878,-p@chr1:1154868..1154878
-
Hg19::chr1:1357098..1357110,+p@chr1:1357098..1357110
+
Hg19::chr1:186891908..186891916,-p@chr1:186891908..186891916
-
Hg19::chr1:206902020..206902039,+p13@MAPKAPK2
Hg19::chr1:206902047..206902068,+p9@MAPKAPK2
Hg19::chr1:206902111..206902115,+p23@MAPKAPK2
Hg19::chr1:206903285..206903294,+p@chr1:206903285..206903294
+
Hg19::chr1:206903297..206903328,+p@chr1:206903297..206903328
+
Hg19::chr1:206904457..206904467,+p27@MAPKAPK2
Hg19::chr1:206904484..206904510,+p6@MAPKAPK2
Hg19::chr1:206904759..206904775,+p22@MAPKAPK2
Hg19::chr1:26879858..26879879,+p@chr1:26879858..26879879
+
Hg19::chr1:26880684..26880704,+p2@MIR1976
Hg19::chr1:3568889..3568900,+p7@TP73
Hg19::chr1:3569072..3569093,+p1@TP73
Hg19::chr1:3598871..3598890,+p11@TP73
Hg19::chr1:3650500..3650504,+p@chr1:3650500..3650504
+
Hg19::chr1:54706790..54706840,-p@chr1:54706790..54706840
-
Hg19::chr1:59844019..59844033,+p@chr1:59844019..59844033
+
Hg19::chr1:59858033..59858039,+p@chr1:59858033..59858039
+
Hg19::chr1:66833306..66833315,+p70@PDE4B
Hg19::chr20:44842721..44842722,-p@chr20:44842721..44842722
-
Hg19::chr20:50244219..50244226,-p@chr20:50244219..50244226
-
Hg19::chr20:50244242..50244249,-p@chr20:50244242..50244249
-
Hg19::chr20:50244262..50244273,-p@chr20:50244262..50244273
-
Hg19::chr20:50244294..50244303,-p@chr20:50244294..50244303
-
Hg19::chr20:62076448..62076464,-p@chr20:62076448..62076464
-
Hg19::chr20:62076559..62076574,-p@chr20:62076559..62076574
-
Hg19::chr20:62077503..62077507,-p@chr20:62077503..62077507
-
Hg19::chr20:62077522..62077533,-p@chr20:62077522..62077533
-
Hg19::chr20:62078818..62078832,-p@chr20:62078818..62078832
-
Hg19::chr20:62078835..62078846,-p@chr20:62078835..62078846
-
Hg19::chr21:42601985..42602001,+p6@BACE2
Hg19::chr21:42602009..42602018,+p17@BACE2
Hg19::chr21:42602040..42602051,+p16@BACE2
Hg19::chr21:42602093..42602102,+p19@BACE2
Hg19::chr21:44690996..44691009,+p@chr21:44690996..44691009
+
Hg19::chr21:45228890..45228908,-p@chr21:45228890..45228908
-
Hg19::chr22:50318813..50318835,+p@chr22:50318813..50318835
+
Hg19::chr2:106407366..106407377,-p@chr2:106407366..106407377
-
Hg19::chr2:106492075..106492082,+p@chr2:106492075..106492082
+
Hg19::chr2:121749533..121749569,+p@chr2:121749533..121749569
+
Hg19::chr2:122921127..122921138,+p@chr2:122921127..122921138
+
Hg19::chr2:122921252..122921262,+p@chr2:122921252..122921262
+
Hg19::chr2:123497892..123497906,+p@chr2:123497892..123497906
+
Hg19::chr2:127841785..127841812,-p@chr2:127841785..127841812
-
Hg19::chr2:127842547..127842552,-p@chr2:127842547..127842552
-
Hg19::chr2:174146763..174146766,-p1@MLK7-AS1
Hg19::chr2:222428639..222428644,-p@chr2:222428639..222428644
-
Hg19::chr2:231454317..231454329,-p@chr2:231454317..231454329
-
Hg19::chr2:46371809..46371812,+p@chr2:46371809..46371812
+
Hg19::chr2:46371977..46371987,+p@chr2:46371977..46371987
+
Hg19::chr2:71900440..71900451,+p@chr2:71900440..71900451
+
Hg19::chr2:96830780..96830784,+p@chr2:96830780..96830784
+
Hg19::chr3:190979043..190979046,-p@chr3:190979043..190979046
-
Hg19::chr3:191000172..191000209,-p2@UTS2D
Hg19::chr3:194974659..194974681,-p@chr3:194974659..194974681
-
Hg19::chr3:36484747..36484761,+p@chr3:36484747..36484761
+
Hg19::chr3:53684729..53684742,+p@chr3:53684729..53684742
+
Hg19::chr4:107426191..107426193,+p@chr4:107426191..107426193
+
Hg19::chr4:128083368..128083415,-p@chr4:128083368..128083415
-
Hg19::chr4:180052248..180052252,+p@chr4:180052248..180052252
+
Hg19::chr4:22733367..22733375,+p@chr4:22733367..22733375
+
Hg19::chr4:26065138..26065144,-p@chr4:26065138..26065144
-
Hg19::chr4:2944054..2944097,-p@chr4:2944054..2944097
-
Hg19::chr4:2944162..2944169,-p@chr4:2944162..2944169
-
Hg19::chr4:2956267..2956278,-p@chr4:2956267..2956278
-
Hg19::chr5:1491515..1491521,-p@chr5:1491515..1491521
-
Hg19::chr5:150503956..150503965,-p@chr5:150503956..150503965
-
Hg19::chr5:169694286..169694300,-p13@LCP2
Hg19::chr5:171074356..171074365,-p@chr5:171074356..171074365
-
Hg19::chr5:17604288..17604293,+p@chr5:17604288..17604293
+
Hg19::chr5:17655952..17655959,-p1@ENST00000509027
Hg19::chr5:25702184..25702199,+p@chr5:25702184..25702199
+
Hg19::chr5:68256471..68256484,-p@chr5:68256471..68256484
-
Hg19::chr6:135968649..135968699,-p@chr6:135968649..135968699
-
Hg19::chr6:135968819..135968824,-p@chr6:135968819..135968824
-
Hg19::chr6:135968827..135968837,-p@chr6:135968827..135968837
-
Hg19::chr6:155951148..155951191,-p@chr6:155951148..155951191
-
Hg19::chr6:155952417..155952429,-p@chr6:155952417..155952429
-
Hg19::chr6:156420886..156420891,+p@chr6:156420886..156420891
+
Hg19::chr6:157956257..157956277,+p@chr6:157956257..157956277
+
Hg19::chr6:20702932..20702938,-p@chr6:20702932..20702938
-
Hg19::chr6:24258489..24258497,-p@chr6:24258489..24258497
-
Hg19::chr6:5272333..5272336,+p@chr6:5272333..5272336
+
Hg19::chr6:82247351..82247357,-p@chr6:82247351..82247357
-
Hg19::chr7:105448088..105448109,+p@chr7:105448088..105448109
+
Hg19::chr7:114271498..114271513,+p@chr7:114271498..114271513
+
Hg19::chr7:114271520..114271529,+p@chr7:114271520..114271529
+
Hg19::chr7:114271567..114271578,+p@chr7:114271567..114271578
+
Hg19::chr7:114271627..114271634,+p@chr7:114271627..114271634
+
Hg19::chr7:114475361..114475390,+p@chr7:114475361..114475390
+
Hg19::chr7:114475543..114475548,+p@chr7:114475543..114475548
+
Hg19::chr7:114475562..114475569,+p@chr7:114475562..114475569
+
Hg19::chr7:122851400..122851414,+p@chr7:122851400..122851414
+
Hg19::chr7:127200868..127200870,-p@chr7:127200868..127200870
-
Hg19::chr7:151487697..151487709,-p48@PRKAG2
Hg19::chr7:151487713..151487722,-p56@PRKAG2
Hg19::chr7:158254742..158254762,-p@chr7:158254742..158254762
-
Hg19::chr7:55495272..55495320,+p20@LANCL2
Hg19::chr8:133989876..133989879,-p@chr8:133989876..133989879
-
Hg19::chr8:142122991..142122996,-p@chr8:142122991..142122996
-
Hg19::chr8:146005409..146005412,-p@chr8:146005409..146005412
-
Hg19::chr8:29327513..29327519,+p@chr8:29327513..29327519
+
Hg19::chr8:29353538..29353568,+p@chr8:29353538..29353568
+
Hg19::chr8:52557749..52557752,-p@chr8:52557749..52557752
-
Hg19::chr8:8718194..8718198,-p@chr8:8718194..8718198
-
Hg19::chr9:102015453..102015458,-p@chr9:102015453..102015458
-
Hg19::chr9:112170923..112170936,-p@chr9:112170923..112170936
-
Hg19::chr9:112172492..112172521,+p@chr9:112172492..112172521
+
Hg19::chr9:112189474..112189486,-p15@PTPN3
Hg19::chr9:132691908..132691915,-p@chr9:132691908..132691915
-
Hg19::chr9:137280199..137280217,+p@chr9:137280199..137280217
+
Hg19::chr9:139403923..139403926,+p@chr9:139403923..139403926
+
Hg19::chr9:139403937..139403938,+p@chr9:139403937..139403938
+
Hg19::chr9:139443238..139443270,+p1@ENST00000450304
Hg19::chr9:139472125..139472131,-p@chr9:139472125..139472131
-
Hg19::chr9:140202302..140202321,-p@chr9:140202302..140202321
-
Hg19::chr9:140301767..140301775,-p@chr9:140301767..140301775
-
Hg19::chr9:36903705..36903714,-p@chr9:36903705..36903714
-
Hg19::chr9:36903715..36903727,-p@chr9:36903715..36903727
-
Hg19::chr9:90219304..90219312,+p@chr9:90219304..90219312
+
Hg19::chrX:12983809..12983815,-p@chrX:12983809..12983815
-
Hg19::chrX:55208469..55208474,+p@chrX:55208469..55208474
+
Hg19::chrX:84118418..84118422,-p@chrX:84118418..84118422
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
1.30672006837127e-050.008271538032790155433IL-2 up reg. targets (Netpath):NetPath_14



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005031tumor necrosis factor receptor activity0.00176319760630788
GO:0043120tumor necrosis factor binding0.00176319760630788
GO:0005035death receptor activity0.00176319760630788
GO:0009306protein secretion0.0461291845360076



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br><br>

Cell Type
Ontology termp-valuen
T cell2.15e-0925
pro-T cell2.15e-0925


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.15.76317e-06
MA0004.11.48724
MA0006.10.168622
MA0007.10.698306
MA0009.10.230395
MA0014.13.48923e-08
MA0017.10.525209
MA0019.10.42552
MA0024.10.121381
MA0025.10.189673
MA0027.11.17088
MA0028.10.00213072
MA0029.10.283019
MA0030.10.128202
MA0031.10.74898
MA0038.10.606284
MA0040.10.292574
MA0041.10.197769
MA0042.10.304599
MA0043.10.439097
MA0046.10.416831
MA0048.10.0307975
MA0050.10.924419
MA0051.10.588046
MA0052.10.0110572
MA0055.12.19384
MA0056.10
MA0057.10.0321993
MA0058.10.689372
MA0059.10.309602
MA0060.10.138087
MA0061.12.08437
MA0063.10
MA0066.11.89687
MA0067.10.120593
MA0068.10.0450839
MA0069.10.212723
MA0070.10.199806
MA0071.10.612925
MA0072.10.935637
MA0073.10.000550007
MA0074.10.10196
MA0076.10.00501717
MA0077.10.186213
MA0078.10.407561
MA0081.10.0176952
MA0083.10.096791
MA0084.10.223625
MA0087.10.0743418
MA0088.10.938315
MA0089.10
MA0090.10.161884
MA0091.10.0556527
MA0092.10.0572965
MA0093.12.0145
MA0095.10
MA0098.10
MA0100.10.0279095
MA0101.12.06849
MA0103.10.360088
MA0105.11.39768
MA0106.11.31123
MA0107.11.71315
MA0108.20.737629
MA0109.10
MA0111.11.02434
MA0113.10.656075
MA0114.10.157356
MA0115.10.0875847
MA0116.12.70222
MA0117.10.115848
MA0119.10.717623
MA0122.11.30217
MA0124.10.251796
MA0125.10.174396
MA0130.10
MA0131.10.00978361
MA0132.10
MA0133.10
MA0135.10.269102
MA0136.10.200665
MA0139.10.0821274
MA0140.10.439295
MA0141.10.302786
MA0142.10.423925
MA0143.10.190264
MA0144.10.437129
MA0145.10.383622
MA0146.10.00355961
MA0147.10.104151
MA0148.10.44365
MA0149.10.00303482
MA0062.20.000626276
MA0035.20.785361
MA0039.20.0023846
MA0138.20.028505
MA0002.24.55681
MA0137.20.24217
MA0104.20.0306967
MA0047.20.739049
MA0112.21.54278
MA0065.20.3631
MA0150.10.868702
MA0151.10
MA0152.10.21402
MA0153.10.367106
MA0154.11.4577
MA0155.10.502119
MA0156.10.441286
MA0157.10.356399
MA0158.10
MA0159.10.93639
MA0160.10.364632
MA0161.10
MA0162.16.87494e-05
MA0163.10.026887
MA0164.10.507117
MA0080.20.329455
MA0018.20.417729
MA0099.20.828712
MA0079.29.64327e-17
MA0102.20.247412
MA0258.12.65782
MA0259.10.0570208
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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